RNA id: XM_021603408.2


Basic Information

Item Value
RNA id XM_021603408.2
length 4230
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110524086
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56105602 ~ 56136576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCAGCCTAACCGCCACCACCTACCCAACCCAAACCGAGGATGAAAGAAATACCAAATATTGTATAGCGAGCAGATCATTGGATGGGCGTTCATAAAGACCAATAGTGCAGCCTGCATCAGCCGCGAGACGAAATCTATATTTTGCCAAATTGTAAGACAGCAGCTACATAAACATATTGACGGATCATGATTTAATTAGTACCATAAAGCTTTCTACCTCGGACCATGGAATATTCTTTATCACGAACCTCAGACGCTACTGGTATCATGGACAATTGAGGTGGTTCGTTGCATGATATAGTGATGTTTTAATTAGTGAGCTGTCGTGGGTGGGATTGTGCTGCAGAAGATCAAAGCATAGGCTACTAGGTTTATGGATTCGGGCACTCACACAGGGAGGCCTGATGGAAGCTGCGACACATTTGGATATGGCACAGTAAACTTCGAGTAAAGGATAGCTATGAATGCGCGAATGAAATTGTGTCGATATATTGCAATACTAGAATAATAATGGCTGTTTTTTTGTAATGTGGTATATAGCATAGTGACTAAGGGTGAGATGTAAAGCGAAGCCTGCAGGATTTTGATATCGGAGCTAACTATATATTTCGCTGCTTTACTGGAAACGTAAACATCCGGATTATCTTTGATCTTTGACTTAATATAACGGTGAGAGTAGTTAACCAACTACAACTCAACAACACAGGACTAATgtcttctcttccttctatttAAACGGAGAATTACGTTTTAATCTTAAAAAGAGGGCAAGTAGTGTGAGTTTGGGCTTTGCGCTCCTCAGGAATCCTGTGTGTTGTGTGATTGGCCAACATCAACATGCCAACCTCACGCTCCGGTGCCACCCCGGTGGAATACTGGGTCGATGGCTCGCGCCGAGATGTCTCCATGGATGAGTTTTACACCATGGGTCCAGAACTGGGAAGGGGGGCCACGTCAGTGGTGTTTCGCACGGAGGAGAAGAAGACACAGAAGCCCTATGCTGCAAAGGTCCTCAAGAAGACTATCGACAAGAAAATAGTGCGGACTGAAATTGGTGTCCTGCTGCGACTTTCCCACCCGAATATTATCCGCCTGAAGGAGATctttgagacagagacagacatcgCCCTCATCTTGGAGCTGGTGACTGGAGGGGAACTATTTGACAGGATCGTGGAGAGAGGCTACTACAGTGAGAGAGATGCTGCCCATGTCATCAAGCAGATTCTGGAGGCAGTGGCGTATTTGCATGAGAATGGGGTGGTGCATCGTGACCTGAAACCGGAAAACCTTCTCTACGCTGACCTCTCCTTGGACGCCCGGCTTAAGATAGCTGACTTTGGCCTCTCGAAGATAATAGATGAACAAGTGACCATGAAGACGGTGTGTGGCACACCTGGATACTGCGCTCCAGAGATCCTCCGAGGCAATGCCTATGGTCCTGAAGTGGACATGTGGTCAGTGGGAGTCATCCTGTACATCTTGCTGTGTGGGTTTGAACCCTTCTTCGATCCGAGGGGAGACCAGTATATGTACAGCCGGATCCTCAACTGCGACTATGAGTTTGTCTCCCCCTGGTGGGATGAGGTCTCCCTCAACGCTAAGGACTTGGTCAGTAAGCTGATAGTGCAGGACCATCACAAGAGGCTGACGGTGAAGGAGGCCCTGGAGCACCCCTGGGTACTGGGCAAGGCTGCCCGCTTCTCCCACATGGACACCACTCAAAGGAAGCTACAGGAGTTCAACGCCCGGCGCAAACTCAAGGCTATCATGAAGGCCGTGGTGGCCACCAGCCGCATGCACGAGGGCTCCCGGCGGCGCACGGACAGCTGCGATATTCCCGGATCCGACAAGACCACCTCCAGGCAGGGCAGCATGCAGCAGGACCCTCCCCCGGATCAGGACCCCCAGGAGGGTCAGGCCAACCAGGGCACAGACACCACCCTGACCCAGGATGAGGAGGACCAGTGCCCTCCGCCCCTGCCGCCACGCAATCCCAGGCCCATCCCTCCTCTACTGTCTGGGGCTTCCTCCCCCACCTGTCTGCCCACCAGGCCCCCACTAAGGGGAattgatggacagagacagatgtcgGTCATTCCCAAGACGGCGGTGGTACGGCCCAGGGTGCCCAAGAAGAGCTGCTCCTCGATGGATTCCGCCTCCACCAAGCGGGAGACCTCCTCCTCAGTCCAGACCAGTCCCCCAAGCCCCAAGAGCCTTGGCAATGGATTCACCATGGGGGTGGAGTCTGGCAGTAAAACGACCCAGTGTTAGTGAGTGGCAGGTACCAAAGAGAAAGAGGGTGGCGACACTCACCTAGGAGCTCCGACCGTTGTTCTAAGATGGCTGATGGCCGTTGTTGCTGTAGTGTGAGATGGTAGATGACAACACGGAGGAGGAAGGATGGCGGAACGGATGTCTTTGTTCAGATCTCGCCTCATATCCGTTTTGATCCGGGACAAAAGACTAGTGCTATACATAACttgatatttatttttttcccttgCTGTGCGCAACGAGTTTGGAGACTTGGATGTGCAAATGAGCTTTTGACTTTGGTTTCAACTGTTGCCGACTTGCTGTAAACTTCTCTACTTTAAGGCCTCTACTTTAAGGCCTCTCTGAACGGGGAATGCCACTTGAAAAGACAACTTGATTTCATACTTTGTATACTCTACACCTTTCTACTATTCAATGTTGGAATCTACTGACTTCATATGCAAATacgtggatatatatatatatatatatatactgtacataaccCTCTCCTTCTTGCATAGCATTCAGGTAGTAAAGATATTGTATTTGTGAGCTTCTGAATATATTTACGGTGTATTTTGAATTAATTGTAATGATCCAATGTTTGCACTGTATATTATCAGATTAATCTATATAGATCGCAAAAAAACATTCACTCTGCTAGTCGTTTACTATCTAAGTCAAATTGCACTTTTATTCCTTTGGAAATATATATATGGCTGAACAGTGGAGCTTAATTTGAGGCTGAAACCAATTTTCTCATTCAGTTGTTTACCCAAAAAGGGTTGTAAAACCTCATTCTGTGGTAGTTATCTGATGAAGGAACATACATGGTAATCATCTCAACAACCTCACTGGAGCTAccagtctctctacctcctttTTTGTACAGGGGCTTCCAACCCAGTAGAAGCAACATCTGTAAAGAAATGATTAGATGAGTTGAGGTACTGTATCAGGCGAAGCAGTCTCTTTCTGCAACATTAGAATGATATTGTCAGTGCCAGGTAAAAACCTGCGAGGTGAATGTTTTCTCGATGGAACTCAAATAACTGAGCAAATGGAAGTGTGTCATTAAAATAGTCAATTTCTAATTTAAGGGCCAACCTTCACCTGCTAACATGTATTCTCACTCGCTTTCATTGCCAAATTGGATTATGTTGCTGACATGATAACACATGTATAAACCATACATTTACACCTATGAAATGTATAAAGTATGTATATTTTACTGATAATTATTATTGCTTACAAATGCTTTATTTGGGGATTGGTGGGGATGTAGTTAAcagttgtgtttgttttgtagtTTCTCAGTTTCCCATTTTTCATTTCTAAAAATAAATGTACCCTACCTTTTTAATATTTTTGGGGAAGATGACATATTTAAGAAAACATGAGATGATTTAACATCAGTCAGAGGGGGAGTGTAGTGGAGGTGTACACCTTTTGTATGTTTCATCATATCAAAATAATCTAAATGAATTGGATTTGATTATTGTATTCTACAGAAATATATTTTAAAGATGGTAGTTGCTGTGTGCTGATATAAAAGGAATAAAACGTTGATTTTCAAGTCCAATATTGCCTTGGGAGGTTTTATAACAAGCTGCTGATATGAGAATCTCCTCCACacgtttgatttgattaaagAGGCCGTTGGCTCATAGATAATTGGACTTAGTGTATATCATTCATgtttgagtgtacaaaacattaagaataccttcctaatattgagttgcagcccATTCTTCATAcagacgggaaactgttgagcatgaataacccagcagcgttgcagttcttgacacaaatcctactgtactaccataccccattcaaaggcatcTTCTATATGGCCCATTCACCCttcgaatggcacacatacacaatccatgtctcaactgtctcaaggcttaacccgtctcctcccattcatctacactgattgaagtggatt

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K13412 CPK; calcium-dependent protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473518 lncRNA downstream 98491 55999872 ~ 56007111 (-) True G417755
TU473408 lncRNA downstream 183945 55836424 ~ 55921657 (-) True G417650
TU473365 lncRNA downstream 257545 55793584 ~ 55848057 (-) True G417609
TU473371 lncRNA downstream 318388 55786961 ~ 55787214 (-) True G417615
TU473368 lncRNA downstream 323372 55781788 ~ 55782230 (-) True G417612
TU474327 lncRNA upstream 82169 56218745 ~ 56218980 (-) True G418505
TU474424 lncRNA upstream 274497 56411073 ~ 56411429 (-) True G418584
TU474430 lncRNA upstream 285762 56422338 ~ 56422619 (-) True G418590
TU474439 lncRNA upstream 299415 56435991 ~ 56436467 (-) True G418599
TU474461 lncRNA upstream 354172 56490748 ~ 56543373 (-) True G418617
XM_021603403.2 mRNA downstream 230210 55871200 ~ 55875392 (-) True nphs2
XM_036977883.1 mRNA downstream 379409 55550621 ~ 55726193 (-) False LOC110524078
XR_005051586.1 mRNA upstream 75162 56211738 ~ 56214599 (-) True LOC118964529
XM_021603412.2 mRNA upstream 104155 56240731 ~ 56383335 (-) True LOC110524088
XM_021603413.2 mRNA upstream 319539 56456115 ~ 56459513 (-) True LOC110524089
XM_021603414.2 mRNA upstream 324203 56460779 ~ 56485866 (-) False LOC110524090
XM_021603416.2 mRNA upstream 326137 56462713 ~ 56485807 (-) False LOC110524090
TU473281 other downstream 495872 55608835 ~ 55609730 (-) True G417527
TU472396 other downstream 945335 55141315 ~ 55160267 (-) True LOC110524071
TU471641 other downstream 1719374 54363286 ~ 54386228 (-) False G416110
TU470869 other downstream 2099929 54003731 ~ 54005673 (-) True G415464
TU470822 other downstream 2212696 53890760 ~ 53892906 (-) True G415420
TU474559 other upstream 572222 56708798 ~ 56709840 (-) False LOC110522975
TU474560 other upstream 573704 56710280 ~ 56711384 (-) True LOC110522975
TU474707 other upstream 697450 56834026 ~ 56834595 (-) True G418830
TU475541 other upstream 1474483 57611059 ~ 57611567 (-) True G419603
TU475533 other upstream 1483478 57620054 ~ 57626174 (-) True LOC110524128

Expression Profile