RNA id: XM_021603421.2


Basic Information

Item Value
RNA id XM_021603421.2
length 2846
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110524091
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56505544 ~ 56525588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTCTTCGGTGTTACAGTTGTGAGCGAGATGCGTCATGAGTGTGTTCTATTAATTAGTACATAAAAAACATTGTGCTTATTTGTACATAGTTAATGAGAGACTGTGTTGCAACCACACGACTGCGCGTGTTAGCGCCACCGGTGTTTAATTTTTGTTGGACGGAAGAGAAAAAAAATTTGCTGGCTAGCTTGGTCGCCGCAGATTTGTTTCTAAATTGGTTTCCGCGTACAGGTCAGTTTTTCGGCCTATTATTAATTACAGGAATAGCGGTAAAGCAGcatCTGCATTTGTGAAGCATCTACATGGCAGTCAGAAGGGGACACATCAGATACCTCAAAGTGTGTGAGGTACAGAGTTGTCAGGGTGACAACAGAGAGTCACAACGGCATGGAAGTAAGGGTTCAATTAACATAAAGCAAGTAGTTTATGATACAGATTACGACGAACACATGGCAGATGAGCCTAAAGATGCCAAAACCAACCTTATCGTCAATTACCTGCCCCAAAACATGAGCCAGGACGAGTTGCGGAGTCTCTTCAGCAGCATCGGCGAGGTGGAGTCTGCCAAACTCATCCGCGATAAAGTGGCAGgcCACAGTTTAGGGTACGGATTTGTTAACTATGTTAACGCTAGTGATGCAGAAAGGGCTATCAATACCCTCAATGGGCTGAGACTACAGTCTAAAACTATCAAGGTGTCCTTTGCCAGGCCGAGCTCTGATGGTATTAAGGATGCCAATCTTTACATTAGTGGGCTGCCCAAGACCATGACACAGAAAGATGTGGAGGATATGTTCACACGCTATGGCCAGATCATCAACTCGCGTGTCTTGGTCGATCAGGCCTCAGGCCTGTCCAGGGGTGTGGCCTTTATCCGCTTTGACAAACGGGCTGAGGCGGAGGACGCCATCAAAGACCTGAATGGGCAGAAACCCCCTGGGGCCTCGGAGCCCATCACAGTGAAGTTTGCTGCCAACCCCAACCAGGCCAAGAACTCCCAGGTCATCAACCAGCTCTACCACAACCAGGGTCGGCGCTTTGGGGGCCCGGTACACCACCAGGCCCAAAGATTCAGGTTCTCTCCGATGAGTGTAGACCACATGAGCAGCATGTCTACGGTCAGCGCTGAAGGGAACTCCACGGCCGGCTGGTGTATCTTCATTTACAACCTGGGCCAGGACGCTGACGAGGGCATCCTGTGGCAGATGTTCGGGCCCTTCGGAGCCGTCACCAACGTCAAGGTCATCCGCGACTTCAACACCAATAAATGCAAAGGCTTCGGCTTCGTCACCATGACCAACTACGAGGAGGCGGCCATGGCCATTGCCAGCCTCAACGGTTACCGGCTTGGAGACAAGATACTGCAGGTTTCCTTCAAAACCAGCAAGGGGGGTCACAAGTAAACCCAAAAGGGTGAAGGGGTACTTGTTTTCCATACTTACAATAATAGAGGAGTGGGCGGGAACTAAATGAGATTGGAAAGGCTACACATTTGTTCTTGCAAGGGGATATCTCCTTGGTTCTTATAATGTAATTTCTAGGCTAACTATCACTTAAATATTTCTTAGCTAGTAGAAAAGTAGTGTCTTCTTGCTGTGACATTAAAATAACCTACACCATTGTGTTTTTTGCTGGGCACGGGGAGGGGTTCTGAAGTTTGCAGGAAGGTTGTTGTCCAATTCTTGTgggttttgtgtgtctgtgtcacatACATGGTTGACGGTGACAATACAAAATCCTGCCATGTCTAATGGTTAGATTCCTACCTGCTTGTAATTTCTCAATATTTTACGTAGCCATTTTATCATGATCAGTAGTTCTGATCCGTGCTAGGCCTTGAATCCCTCAAGTCTTTCTACACTTCTATTCTGTCATTTTTAACACAAGCGTCCTTTGCTAAATTGACACATCAGAGTATTAGATCAAGCATGCCCTTCTAGATGTGAAAGTGGGCATGTGCTGGCAGTGCATCtttattttgatattttttttggATTCGAATAGGTTTGAGGAAAGATGACTATTTAATGAGTGACCAAAGGGGGAGGACTGAAAagaaacaagtgtgtgtgtgtgtataaatatatacgcgcgcacacacaccccCCAATCATGCCCTCTGACATCTTTTAATATCTGAAATGTAATAGAAACCTCAAGGTTTAAATTATTCAGTTGATTAGAAGATACTCTTCTGTCAACTGTAATGTTGATAATTGAGTATGCAAGCTGTACCTAGTCCtatgtttttatttgattgaaACTGCCTTTCAATGTCAACTTGTTTCCCGTCATCTTTTTTTTTACTCTTTCCATTTAACATTTCTGTAGTGGAAATTTTAGTTTGttcctgtttttaattttttttttaagttacacTTTGCTTTTAATTTGGGTCATTTGAAATTGAAAGTTACATAAACATGACTTAAATACCATTCCAACTTGGCTCCAGTATGTGTCCATACTTTACTTCTTAATTTGAATTGGAAAGCCCTGTCGGGGCTTGGTTCAGTTAATTTTAACCTAGTCAAGGTAACGCAGGAGCTTGTTTATGGGGTTTCTTATATGCTATTATTTCCTCACGAGGCCAAATGATGGGGTCCTGGAAGGGGAGCTCACGGTTTCCCAGTTAGATGTGCATTATGGCCACTTCTGCGATTTGTGTGTACAGTCAGtgaatttttttttctttttttttctttttttttctctccatttgaCTCTGTCCAGAAAAATGTATGTATTGGTCTTTCGCCGAGGAATGAAACATTTTTGGTAACAGCTGATAACATCCCCATTCTCAAATAATAAAACACTTCTCCATGTGAGAAGTTAAAGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473780 lncRNA upstream 27199 56477763 ~ 56478566 (+) False G418007
TU473781 lncRNA upstream 27199 56478117 ~ 56478566 (+) True G418007
TU473760 lncRNA upstream 32630 56471045 ~ 56473135 (+) True G417989
TU473762 lncRNA upstream 39904 56460784 ~ 56465861 (+) True G417991
TU473752 lncRNA upstream 69784 56435617 ~ 56435981 (+) True G417983
TU473847 lncRNA downstream 68390 56593978 ~ 56594366 (+) True G418063
TU473861 lncRNA downstream 88618 56614206 ~ 56616854 (+) True G418076
TU473878 lncRNA downstream 108265 56633853 ~ 56667606 (+) True G418087
TU473972 lncRNA downstream 300551 56826139 ~ 56826512 (+) True G418176
TU473974 lncRNA downstream 302083 56827671 ~ 56827880 (+) True G418178
XM_036977902.1 mRNA upstream 400484 55932977 ~ 56105281 (+) False LOC110524085
XM_021603427.2 mRNA downstream 59620 56585208 ~ 56593281 (+) False LOC110524094
XM_021603426.2 mRNA downstream 60109 56585697 ~ 56593281 (+) True LOC110524094
XM_021603431.2 mRNA downstream 106208 56631796 ~ 56647090 (+) False stil
XM_021603432.2 mRNA downstream 106208 56631796 ~ 56647090 (+) False stil
XM_021603433.2 mRNA downstream 106208 56631796 ~ 56647090 (+) False stil
TU472519 other upstream 1180494 55324645 ~ 55325271 (+) True G416857
TU471439 other upstream 1892623 54590074 ~ 54613142 (+) False G415946
TU471449 other upstream 1892623 54590074 ~ 54613142 (+) False G415946
TU471274 other upstream 2155150 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 2175285 54330080 ~ 54330480 (+) True G415809
TU473866 other downstream 92302 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 200597 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 398336 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 418250 56943838 ~ 56958165 (+) True LOC100135807
TU475029 other downstream 839776 57365364 ~ 57367337 (+) True LOC110524119

Expression Profile