RNA id: XM_021603438.2


Basic Information

Item Value
RNA id XM_021603438.2
length 1585
RNA type mRNA
GC content 0.52
exon number 7
gene id serpinc1
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56696618 ~ 56702156 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTTTCTCCAGCCCCCCACTTGCGCTACAGGACACTGACCCCTATGAGGGACTCATGAGTTCAACTCGCAGCCGATACTTAGgttccacacacacagtcatttacAAGGAAAATATACCTCAGgaTGAGGTTGTCCGAGTTTGTGTGGATTCTGGGACTGCTCCTCGCCTTGCTATCAACCTCCCAGGCGTTCAAAGACTTCTGCCATGTCAAGCCCAAAGACGTGCCCCTGGAGCCCAAGTGTGTCTACCGCAGCCCCGAGGATGAAGCCTTGACAGCGGATGCTAAACCAGAGAAAGTCCCTGAGAACACCAATCCCCGGGTGTGGGAGCTGTCCAAGGCGAACAGTCGCTTCGCCTTGTCCCTGTTCAAGCAGCTATCCCAGGGTAAACCCAGCGAGGCCAACATCTTCATGTCCCCTATCAGCATATCCACAGCCTTCGCCATGACCAAACTAGGCGCCTGCAACAACACGCTCAAACAGATTATGAACGTGTTTGAGTTTGACACGATCAAAGAGAAGACGTCGGACCAAGTGCATTTCTTCTTCGCCAAGCTAAACTGTCGCCTGTACCGCAAGAAAGACAAGACGACAGAGCTGATCTCAGCCAACCGTCTTTTCGGAGAAAAGTCTCTGGCATTCAGTGAGAATTACCAGAATATCAGTGAGCTGGTGTATGGCGCCAAACTCATGCCACTCAATTTCAAGGAAAAGCCAGAGCTGTCCCGGGTGACCATCAACGATTGGATCTCAAACAAGACGGAAAAAAGGATTCAGAACACTTTGCCGGAGGGATCACTGAACTCCAACACTGTGCTGGTCCTGGTCAACACCATCTATTTCAAGGGTCAGTGGAAAAGCCAATTCGACAAAGACAAAGTCTTCAAGGCCGACTTCTACGTGAGTAAGTCCAAGACATGCCCAGTGTCCATGATGTACCAGGAGACCAAGTTTCGCTACGGCAGGTTCACTGAAGATAAGGTGCAGCTGCTGGAGCTGCCGTACCGTGGAGAGGGCATCACCATGGTGCTGATCCTACCACTGAAAGGAACACCCTTGTCTGAGGTGGAGGAGAACCTGGACTTGAAgaagctgactggctggctggataACATGAGGGAGACCGCGGTGTCGGTGCATCTGCCACGCTTCCGCATCGAAGACAGCTTCAGTCTGAAGGAGCAACTTCAGGCCATGGGGCTCGAGGACCTCTTCAGCCCCAGGGACGCCAGCCTCTCAGGCATCCTGGAAGACGAGGCAAATAATCTGTACATTTCAGATGCATTCCATAAAGCATTCATAGAGGTGAATGAGGAAGGCAGTGAGGTGGTTGCTGCCACAGCTGTGGTGGCCATCGGCCGCTCCATCAACTTAAACCAGGAGGTGTTTATGGCCAACCGGCCCTTCCTCCTGCTCATCCGAGAGTCCACCATCAACACCATGGTGTTCACCGGCCGGGTGGCTGACCCCTGTGAcccctgatcacacacacaccaacctcgGATTTGTCATTCATGTCATGTAACAGCCCATTTCTGATCTCTGTATCAATGTAAAATAAACCAAATCGGATGGACAGTGGA

Function

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:2000266 regulation of blood coagulation, intrinsic pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0008201 heparin binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K03911 SERPINC1, AT3; antithrombin III

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473878 lncRNA upstream 29031 56633853 ~ 56667606 (+) True G418087
TU473861 lncRNA upstream 79783 56614206 ~ 56616854 (+) True G418076
TU473847 lncRNA upstream 102271 56593978 ~ 56594366 (+) True G418063
TU473780 lncRNA upstream 218071 56477763 ~ 56478566 (+) False G418007
TU473972 lncRNA downstream 123983 56826139 ~ 56826512 (+) True G418176
TU473974 lncRNA downstream 125515 56827671 ~ 56827880 (+) True G418178
TU473977 lncRNA downstream 127566 56829722 ~ 56829961 (+) True G418181
TU473979 lncRNA downstream 131220 56833376 ~ 56833580 (+) True G418183
TU473980 lncRNA downstream 131481 56833637 ~ 56833862 (+) True G418184
XM_021603435.2 mRNA upstream 8048 56658922 ~ 56688589 (+) True rc3h1a
XM_036977915.1 mRNA upstream 15349 56658921 ~ 56681288 (+) False rc3h1a
XM_021603432.2 mRNA upstream 49547 56631796 ~ 56647090 (+) False stil
XM_021603443.2 mRNA downstream 77702 56779858 ~ 56788653 (+) True dph5
NM_001124203.1 mRNA downstream 241687 56943843 ~ 56956322 (+) False LOC100135807
XR_005051970.1 mRNA downstream 253168 56955324 ~ 56955462 (+) True LOC118964777
XM_021603458.2 mRNA downstream 313772 57015928 ~ 57037694 (+) True LOC110524109
XR_005051954.1 mRNA downstream 324169 57026325 ~ 57026460 (+) True LOC118964761
TU473866 other upstream 68020 56617890 ~ 56628617 (+) True G418077
TU472519 other upstream 1371366 55324645 ~ 55325271 (+) True G416857
TU471439 other upstream 2083495 54590074 ~ 54613142 (+) False G415946
TU471449 other upstream 2083495 54590074 ~ 54613142 (+) False G415946
TU471274 other upstream 2346022 54346536 ~ 54350615 (+) False mutyh
TU473915 other downstream 24029 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 221768 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 241682 56943838 ~ 56958165 (+) True LOC100135807
TU475029 other downstream 663208 57365364 ~ 57367337 (+) True LOC110524119
TU475377 other downstream 1182224 57884380 ~ 57899648 (+) True G419452

Expression Profile