RNA id: XM_021603445.2


Basic Information

Item Value
RNA id XM_021603445.2
length 6030
RNA type mRNA
GC content 0.45
exon number 16
gene id cdc14ab
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56864450 ~ 56913656 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGTGACGCCCTATCCGCAATCATGGCAGGGAAAAGATTTGTGCGGTGTGGGAAAGAAGTGAAGAGGACGTCTGTTGTTTGTAATGCATTGATATTTTCTTGAGTTAACGCAGCGCGGAATGAAACCAAGAGGCATGCAAATATTTTTTTGCTGCAGGGCTTCACTTTATCATTGGGCATGGATTTCGAATCGGAATGTCCAAATGACGTGTAATCTATTCTTTCAGCCTAGACAGAGTAGAGCAAAGTGCGTGGTTAGCAACTAGGATAGCTTCTGTCTATCCAGCTAACTTCATTACTgtactttaaaaaatacatatagaTAGCTAGATAACGGTATCAGACTAACCTTTTCCCAGTTTAGTTGGTATTTGCAACTTGTCTGTGTCGATGCCTCTCGACAGTCTTAAACATTCTGCTATTCTTTCAACTTTGTTTAAAATGGCAGACGACATAGAATTAATAGGAGCTTCTGAATTTATAAAAGatcGATTATATTTTGCTACCATAAGAAGCAAACCAAAAAGCACTGCAAACACACACTACTTCTGCACGGATGACGAATTTATCTATGAAAACTTCTATGCAGATTTTGGACCCCTCCACCTAGCCATGCTGTATAGATATTGttgtaaactcaacaaaaagcTGAAGTCCTTCACACTGACCAGAAAGCGAATCGTACACTACACCAGCTTTGACCAGCGGAAAAGGGCCAACGCTGCTGTTTTAATCGGTGCCTATGCTgtCATCTACCTGAAGAAGACTCCAGAGGAGGCCTACAGGGCTCTGATCTCAGGCTCCAATTCTTCATATCTTCCCTTCAGAGACGCCTCATTTGGAAACTGCACATACAACCTGACTATTCTCGACTGCTTGCAAGGAATCCGGAAGGCCCTGCAGCATGGATTCTTTGACTTTGAGTCGTTTGATGTGGACGAATATGAGCACTACGAGCGAGTGGAAAATGGAGACTTCAACTGGATCGTGCCTGGGAAATTTCTGGCCTTCAGTGGACCCCATCCCAAAAGTAAAATAGAAAATGGCTACCCTCTTCACGCTCCAGAAGCATACTTCCCCTACTTCCGACAGCACAACGTTACCTCGGTCGTCCGGCTCAACAAGAAGATCTACGATGCCCAGCGCTTCACGGATGCCGGCTTCGACCACTACGACCTGTTCTTTGTAGACGGCAGCACGCCAAGCGACATCATCACCCGCCGCTTCCTGCACATCTGCGAGAGCACTGACGGCGCCGTGGCCGTCCACTGCAAAGCTGGCCTTGGGCGTACAGGCACTCTCATAGGCTGTTACCTGATGAAGCACTACCGCTTTACAGCAGCAGAGACCATTGCCTGGATCAGAGTCTGCCGACCAGGCTCCGTCATCGGCCCTCAGCAGCACTTCCTGGAGGAGAGGCAAGCAGCCATGTGGATGCAAGGAGACGTGCAGCGTTCGCAGCAGAAGCAGCCGAGGGGCGTGTCTCGCCTCACCTCCAGCATGGATGACCTCACCCTCAACCCCACCCTCACCACCAGCCCTGGTGGCATCCTCAAGTCCCACAGCATCGACCGCCTCCAAGAGAACGACTACATTGGAGAGAACGGGCTCTGCATGACCCAAGGAGATAAACTGCGTGCCTTAAAGGGCCGGCGGCAGCCCAGGTCTGCCACAACGGGAGCCCTAAGACTTGAAGACATGAAAATGCACACCAGGTCACCGTCCCAACCTTTTAGcaGGATGAACCTCGGAGTGGGCACTCAGGGCACCATCTCCCCTCTCAAGTCCTCCAAAGTCCCGTCATCCTCTGCTTCGGCCAGCGCCAAGAGAAtcggcagcagctcctcttcagCGTCCAACCTCAAGAGCTCCTCCATCAACTCCAGGCTAGCCAGCTCCCTAGGCAACCTGTATGCAGCCAACGGCGGTGAGGACAATAAGAAGCTGCCATTCGCTCCCACTTCAtcaccaccctcctctcccccctcgtcCATCGTCACCATCACTCCATCGGGCCGGACGGCTCCTGGTCCCTGCTACGTGGCTAACGGCTCGCGCGGCACCAATTACCACCATTCCGAGGCCAACAACAATCAGTATAATTCCTCCCCCGCCGGGATCTTCAGCCACGGTGGCCTTGCGGGGGCCCCACACCACGCTGCAGGCAGGCTGGGGCCCAGGCCTGAGGATTATGGCCCCTACAGATCCCAAAAGGGGGGCTACTCCGGCCTGAGCGGACCCTCTGGCCGCTACCTCAGTCGCTCAATCCCCTCCCTTCAATCTGAATATGTTCAATACTAAATCGGTGGTGCTGCGTTGACCGGACAGACACCTTGACACTGGACCTCTGACCTGGATGGGATGGGTCTCCCAcccccttttttttctctcgcaatatctcccccactctctcctacATACTGAAAGAAAAATTAATAAACCGTGGCATCTGAATGGGTGTGGTCTTTGGAGACGGGCACATTGACAGCCACAAACTCCCAAGTGCTCATGGAACTTTGAGTTTTGGGCTTCTTATGTCAGCCTCAGACGGCCTCGATCCACCCTAACTGCAGTCACTGTTTGGATAATGCTTACAAAGGGCGATTTGTTTACCCAGCTTTTTCCCCCCTTTTTTTCTGGCGAGCTATGATTAGGTTTGGCCAGGCTGTGACTGTGAGTGCTCTTTCTTTTAAAGCTGAGATCCGGACATATAGACTTTCCTGTATCacatatctctgttttcttttatATGTTTATGTGCTAATACTGTGTACACATGACTTGTACTGGGGGGGGGAAtagttaaaaataataataataattttagacAATGTTTTTATACATGAAATATGACAATTTTGTTGCCTGGATAAAGAAATGTTTATTTAGAAGTGGTTTAAAGAACATGTTTTGGTTTACgacaattctatttttgtctcTGAGTGTAACTACTTCACTAACAATACATCTAGATGAAAATATGTGAGATTGTGAGAGACGGCTTACGGTATTTTGCGAGCCGTGTTCCTTATCAACAATGTATTTACAGGACCAGGCTCAGGGTAAAGTGCTCTCCTATTTACGATTGTGTTTTGTGCGTGGGTGGGGGTGTATGTCCGCGTGTGCATGTAGTAGCATGTACGTACCATAGACTATGAGAATATGTACGTATGTGCCCATGTGAGCGAGTGGTTACCGTGTGTGTAGGGGGTTGTCTAGAGATCATGTTTGCAGTCCTCTGGTGATGGGCTCTAGAGAAGAGATGTGAATGGAAGAGAATTACAAATAGGGAAGAAATTAATGCTGTTTCTTCACTATtctaaaacaaaaatgttttgtttttgattAAGTCAATTCAATCGACTGGTTTCAATTGGAACTAATAAATAATGTTCTCCTCTGTCGCAAGCCTACAGGAGATTTGCATATCAATGGGACAACTATAGGATAAATACTAAAGTCATACCTGCAACCAGCGTTTTGTAGGCCTTgtgactatgtactgtatgtttagcATGATGAACCAAAAGGATGATTCAAACCGTGGTCATTACTAGAGGAAATTTGAGTTGTGGTGTTGGACCGACACCACCCACAACACAAGCCTCAGTCCCTACAGTATACTGTTCATGCCAGGCAGCTCAGCAACCCTCTCCACAGACACAGGATCCCACTGCAATCATGCTCTTTTTAATGGGAAAATGTTTGATTTTAATGAGCAGATTTTCAGTGTTATTCGACACTCATTGACTCGCTGTAGATTACGAAACTTGATTTTGTGGCAGACTATTTttaaacgcgcacacacacacacacaccctactgtAGAACCAATTATGTTTGTTGTTTTATAATTCAAGGCGCAGTGGAAGTTCATCGCTATTACTGAAATATTTCCATGTTGTGTGGCGTGTTTGTGTTGAATGTAAAAACTAGTCAGAGACTGTTTTTCCTGGCTTGTGTGTATTATAATTAGTTCAGCTTGTAGATGGAGAGAACTTTTGCAGGTAGAGGttcctaaaaaaataaaaataaatgaaaagcacaactgtcccccccaaaaaatgctttCTTTAGAATGTAATGCTGGATGTCATTGGGTGCACAATGCAGCGGTCATTATCAAAGCTGGAGTTCTACCAATGAGTATGGCCTACGATGGCCCAACTAAGTACATTTTCTGTTGGACCTTGTAACAATAGATCCATATATTTGGATgcttcttatttttttattttatgtagTTGAATATTGAAATTGATttgggggagagaaaaaaaatggatACAGAAGCATTTGTTTATCACTGATTTGATCATTTTTGTTATTATTTTAGACCTCTGTACATTCCTGGCAGTGACATTATTTTGTTTCAAAATGGGAGAATCTTAATGCAGGTGTTCTACCTCCATGAAATGTACAATTTTAATAGCAAAATTCTTACATGCATATATTTTTTCAAGCAGTATGTAAAGAAAATGTTATAACTGTAGATCAGTATTTTTCATACAGTAAGCATACTAAAATGCAAATGTGTCTACTGTATGTACacagagcaaaaatataaacgcaacattttaaaagattttactgagtttatttaaggaaatcagtcaattaaaataattgcattaggccctaatctatggatttcacatgactggggatacagatatgcatctgttggccacagctactgtactttaaaaaaaataggtaGTGCTGTGGACCAGGGGAAAaaacagtccgtatctggtgtgaccaccatttgcctcgtgcagtgcgacacatctccttcgcatggagttgatcaggctgttgattgtggcctgtgtaatgttgttccactcctcttcaatgacttggctgtgcgaagttgctggatattggcaggaactggaacatgctgtcgtacataTCGATCCAGTGCATCCCAAaagtgctcaatgggtgacatatctggtgagtatgcaggccatggaagaactgggacattttcagcttccgggaattgtgtacagatcctagcGACAtagggccatgcattatcatgcggaaacatgaggtgatggcggcgaatGAATGGCATAACAATGGGCCTCGGTATCTCGTCACAGTatgtctgtgcattcaaattgccattgataaaatgtaattgtgttcattgtccatagcttatgcctgcccataccataatcgcACAACCATCATGTGGCACTCTgctcacaatgttgacatcagcaaaccgctcacccacatgattccatacacgctgtctgccatcagccatgaagagcacacttctccagcatgccagtggctaTTGAAGGTCACCATTTGccaactgaagtcggttacgacgctgtACTGCAGtcgggtcaagaccctggtgaggacgacaagcacgcagatAAGCTTCGCTGAGACAGTTTGTGCcaaaattctttggttgtgcaaacccagtttcattagacgatcccgcaggtgaagaagccggatgtggaggtcctgggcgtggttacacgtggtctgcggtcgGATATATGGCCATATTCTCTAAAATGgggttggaggtggcttatggtagagaaaatgaacattcaattcactaactctgatggacattcctgtggtcagcatgccaattgtgtgcatgctgaccgcaggaatgtccatcagttaGTGATACGGCATATTTTAatgtgtccccagcacaaggtgcacctgtgtaatgacaacgctgtttcatcagcttcttgatatgccccacctgtcaggtggatggattatcttggcaaaggagaattgCTCACTAAGAGGGATGAAAACAAATGTGTGCATAAAACTTGAGCAAAATACGTTTTTGTGCAAATAGcacatttctggtatctttttGGTTCAGCTCATGAAAATGGGACCAATACTTAACATATTGCGttgtatattttttgttcagtgtatatattttacatttacagtTAATGCAGGTTTCTAAAGTAAGtaacaaaataaaaacacattttaaagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474716 lncRNA downstream 5699 56858549 ~ 56858751 (-) True G418839
TU474713 lncRNA downstream 5958 56858258 ~ 56858492 (-) True G418836
TU474712 lncRNA downstream 6293 56857625 ~ 56858157 (-) True G418835
TU474549 lncRNA downstream 162288 56698200 ~ 56702162 (-) False G418689
TU474744 lncRNA upstream 1793 56915445 ~ 56915660 (-) True G418867
TU474749 lncRNA upstream 18650 56932302 ~ 56932694 (-) True G418872
TU474772 lncRNA upstream 39900 56953552 ~ 56953930 (-) True G418892
TU474775 lncRNA upstream 41917 56955569 ~ 56958154 (-) True G418895
TU474788 lncRNA upstream 68998 56982650 ~ 56982872 (-) True G418908
XM_021603451.2 mRNA downstream 2134 56860615 ~ 56862316 (-) True gpr88
NM_001124517.1 mRNA downstream 22003 56838507 ~ 56842447 (-) True LOC100136253
XM_036977917.1 mRNA downstream 47385 56789633 ~ 56817065 (-) True LOC110524101
XM_021603442.2 mRNA downstream 47387 56789633 ~ 56817063 (-) False LOC110524101
XM_036977918.1 mRNA downstream 48142 56789633 ~ 56816308 (-) False LOC110524101
XM_021603453.2 mRNA upstream 10264 56923916 ~ 56929200 (-) True LOC110524106
XM_036977927.1 mRNA upstream 50326 56963978 ~ 56973032 (-) False LOC110524107
XM_021603454.2 mRNA upstream 50326 56963978 ~ 56973388 (-) True LOC110524107
XM_021603457.2 mRNA upstream 71354 56985006 ~ 56998919 (-) False LOC110524108
XM_021603455.2 mRNA upstream 71354 56985006 ~ 57002024 (-) False LOC110524108
TU474707 other downstream 29855 56834026 ~ 56834595 (-) True G418830
TU474560 other downstream 153066 56710280 ~ 56711384 (-) True LOC110522975
TU474559 other downstream 154610 56708798 ~ 56709840 (-) False LOC110522975
TU473281 other downstream 1254720 55608835 ~ 55609730 (-) True G417527
TU472396 other downstream 1704183 55141315 ~ 55160267 (-) True LOC110524071
TU475541 other upstream 697407 57611059 ~ 57611567 (-) True G419603
TU475533 other upstream 706402 57620054 ~ 57626174 (-) True LOC110524128
TU475656 other upstream 786093 57699745 ~ 57705936 (-) True G419714
TU476193 other upstream 1198735 58112387 ~ 58114060 (-) True G420193
TU476443 other upstream 1499476 58413128 ~ 58414143 (-) True G420421

Expression Profile