RNA id: NM_001124203.1


Basic Information

Item Value
RNA id NM_001124203.1
length 2089
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC100135807
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56943838 ~ 56958165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAACAAAGATGGCGGCAGTTACCAGAGGCTCATTCACATTTATTAGACGCTTGCTCTTGGCACATCGGTACAAGCTTTGCTGCTCCAGGGTCCAAACTGGCCGACCAGACTACACCCGTCATCCCCACACTGTCTTCATCCCTCAGCTGTGCAGCTCTAGGTTTTTCCACACCAGTTATGTCACATCAGGACCAATTCTGCCATTCAAACTGTCAGATATTGGCGAGGGCATCATGGAGGTGACGGTGAAGGAATGGTATGTGAAGGAAGGAGACAAAGTCTCCCAGTTTGATAGCATCTGTGAGGTACAGAGTGACAAGGCATCTGTCACCATCACAAGTCGCTATGACGGTGTCATTAAAAAGCTCTACTATGAGGTTGATGCCACAGCCTTAGTGGGCACACCCCTGGTGGATATCGAGACAGAGCCCGGTCCGGAGGTGGTCCATGAGGAGGATGTTGTGGAGACCCCGGCGATGTCAAACGATGAGCACACACACCAGGAAATCAAGGGACACAAGACCCAGGCCACTCCTGCAGTCCGTCGTTTAGCCATGGAGAACAATATCAAGCTGAGTGAAGTGGTCGGTACCGGGAGAGACGGACGGATCCTCAAAGAGGACATCCTCAACTTCCTGGCCAAACAGACAGGGGCCATCTTACCCCCGACCCCATTCCATGAGATCCAGCCACCCCCTCCCGCAGCATCCGCCCCCTCCTCGGCCTCCATGCCCAAGATGAAGCCCACACCAAGTGTCCAGCTCCCTGTCGTCTCCAGGCCCGTCTTCACGGGCAAGGACAGCACTGAGCACCTGAAAGGTTTTCACAAAGCAATGGTGAAGACCATGACTGCAGCTTTGAAGATCCCCCACTTTGGTTATAAAGATGAAGTGGATTTGACGAGGCTGGTGCAGTTGCGCAAGGAGCTGAAGGGCCTGTCAGAGGCTCGCGGTGTCAAGCTCAGCTACATGCCCTTCTTCATCAAGGCTGCTTCCCTGGGCCTTCTCCATTTCCCTATCCTCAACGCCTCGGTGGACGAGGCTGTTCAGAACATCACCTACAAGgcaTCCCACAATATTGGTCTGGCCATGGACACGAGCCAGGGCCTGCTGGTGCCCAATGTGAAGAATGTGCAGTTGCTGAGTGTGTTTGAGATCGCAGTGGAGCTCAACCGCATGCAGACCCTGGGCGCCACGGGCCAGCTGGGCACGGCTGACCTCACAGGAGGCACCTTCACCCTCTCCAACATTGGCTCGATTGGAGGCACTTATGCAAAGCCAGTAATTCTGCCTCCTGAGGTGGCGATTGGCGCTCTTGGAAAGATCCAGGTCCTACCCAGGTTTAACTCGAGGGACGAGGTGGTGAAAGCTCACGTCATGAACGTCAGCTGGTCGGCAGACCACCGGATCATCGACGGGGCCACCATGGCGCGGTTTTCCAACCTGTGGAGGGACTACTTGGAGAACCCGGCTTCTATGGTCCTGGATCTGAAATGAGCATGCGGTACCCTGGCCTGCATCCCCTGGACGCAAGCCCAGCGACGCAAAACCAGCCCCCATGATGATGTGAAGTTGGTCTACTGTACTCTGACTCTTTGGGTAGTCACTTTGACTGGGTGTTACTGGTCACCATACTGCTCCTGACCCCTTGGCCATCCAAACCTTTCTTCCTCCGAACATGGATGGCTGCACACGCCACGGACACCACAAGTTCCCTTACTACTCAACGTTGTGAAACTAATCTCTAGTTGCTGGCTGTTTTTATCTTTGTGTGTGGCCTTCGTTTGTTTGCTCTCTTCTGGTTGCCTTACTGACATAGGATGGGTATGAACAGTAGCGCTTTCTCCTGAAGAGCAGAATGTTGGaaggaaaactttttttttttttagtaaacCTGTTGTATTTCTGAAATACTGTATAACCCTGTAAAAATGTCTTTGCACCTTTTTGTTTTCTTACAGCCCCACACATTCCATCAATGCTAGAAAGCTATTTTCAAGAGAATGTGCGGTTTAGTGATTCCCTATGGAAAGCACCATTGCACAACATGCGCTTGTTAGTGTTCAtatcagctacagtgccttcaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474072 lncRNA upstream 1178 56942425 ~ 56942665 (+) True G418265
TU474071 lncRNA upstream 1884 56941754 ~ 56941959 (+) True G418264
TU474011 lncRNA upstream 75638 56864489 ~ 56868205 (+) False G418209
TU474012 lncRNA upstream 75638 56864489 ~ 56868205 (+) True G418209
TU474013 lncRNA upstream 79619 56863974 ~ 56864224 (+) True G418210
TU474059 lncRNA downstream 7672 56963994 ~ 56965420 (+) True G418252
TU474104 lncRNA downstream 53864 57010186 ~ 57011064 (+) True G418297
TU474102 lncRNA downstream 57295 57013617 ~ 57015171 (+) True G418295
TU474130 lncRNA downstream 83414 57039736 ~ 57039941 (+) True G418323
TU474195 lncRNA downstream 186659 57142981 ~ 57143200 (+) True G418379
XM_021603443.2 mRNA upstream 155190 56779858 ~ 56788653 (+) True dph5
XM_021603437.2 mRNA upstream 241687 56696618 ~ 56702156 (+) False serpinc1
XM_021603438.2 mRNA upstream 241687 56696637 ~ 56702156 (+) True serpinc1
XM_021603435.2 mRNA upstream 255254 56658922 ~ 56688589 (+) True rc3h1a
XM_036977915.1 mRNA upstream 262555 56658921 ~ 56681288 (+) False rc3h1a
XM_021603458.2 mRNA downstream 59606 57015928 ~ 57037694 (+) True LOC110524109
XR_005051954.1 mRNA downstream 70003 57026325 ~ 57026460 (+) True LOC118964761
XM_036979052.1 mRNA downstream 82795 57039117 ~ 57061390 (+) True nwd1
XM_021603461.2 mRNA downstream 108590 57064912 ~ 57074678 (+) False LOC110524113
XM_021603463.2 mRNA downstream 108590 57064912 ~ 57074722 (+) False LOC110524113
TU474058 other upstream 18667 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 214022 56726185 ~ 56729821 (+) True G418119
TU473866 other upstream 315226 56617890 ~ 56628617 (+) True G418077
TU472519 other upstream 1618572 55324645 ~ 55325271 (+) True G416857
TU471439 other upstream 2330701 54590074 ~ 54613142 (+) False G415946
TU475029 other downstream 409042 57365364 ~ 57367337 (+) True LOC110524119
TU475377 other downstream 928058 57884380 ~ 57899648 (+) True G419452
TU476101 other downstream 1456801 58413123 ~ 58416776 (+) False G420117
TU476694 other downstream 1986406 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 3737935 60694257 ~ 60695905 (+) True LOC110524226

Expression Profile