RNA id: XM_021603459.2


Basic Information

Item Value
RNA id XM_021603459.2
length 2126
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110524110
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57011622 ~ 57015940 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGTGATGACGTCTAACACTTGCGACGAAGTCAACACCTTTTTTGCTATCATCACCAGACCTATCAGCAGAGATACCTTTCTAATATCTCTGGCACCACCAGCTACTGCAAGAAGCACCTGAAGCAAAGGCAACTGGGTCCCTCACAATACACTTTCTACTAAGGGGTTTGGACCTCAATCCAAAATGACTGACACAAAGCGTCTTGCCTTCTCCATCATTCACTTTCTTCATGATCAACTGGGCTCTGGGAGTCTATCATCAGATGCTCAGGAAAGTTTAGAAGTTGCAGTCCAATGCCTGGAGACCGCCTTCAATGTCTCGACCGACGACCAGACcctagctgtcactcaaacgCTACCAGAGATTTTTGCCTCTGCGACACTGAAGCATCCAAACACCCTCCAAGTGAATATAAACACAGCCACAGATTCCCCcactgaggaggaagaggcagaggcTGAGCGACTCAAAACTGATGGGAATGATCAAATGAGGGTTGAGAACTATGGGGCAGCTGTGGAATTCTACTCAAAGGCTATTGCCATAAACCCCCAGAATGGAGTTTACTACTGCAACAGGGCTGCTGCATACAGCAAACTAGGCAACTACGCTGGAGCAGTGCAGGACTGTGAACTTGCCATTGGTATTGACCCAAACTACAGCAAAGCGTATGGAAGAATGGGTTTGGCTCTAGCCAgtttaaacaaacacacagaagcTGTAAGTTATTACAAAAAAGCCCTGGAGTTGGACCCAGAGAACGACACCTACAAATCCAACCTGAAAATAGCAGAGCAGAAAATGGAGACTCCAAGCCCAACAGGGGGAGTGGGAGGAGTTGATCTGGCTGGGTTGCTCAGTAACCCTGGTTTCATGAACATGGCATCTGGTTTGATGAACAACCCACAAGTACAGCAACTGATGTCGGGGATGATGTCAGGGGCTTACGGGCCAATGGGACCTCCAGCAGCGTCTGGAGTAGGTCCTGGCTTAGGTGCAGGACCAGGGCCTGtaccagggttagggttgggagccGGACCGGCAGCAGGAGTTGGAGTAGGGGGAGCGGGTCCGGGTGACATCTCTGGTCTCATCCAAGCGGGCCAACAATTTGCGCAGCAGATGCAACAGCAGAACCCAGAGTTAATTGAACAGCTGAGGAGTCAAATTCGCAGCCGGCCGTCTAGCGCTAGCAACGATGAGCAACCTTGACCCTCAGACGGAGAGAGATTTGTGTGTGGAAAAGTGAAGACGGCCTGTGTcctttttttttgtaatttgtaTTATTCTCGCAACTCCGGGGACAAAAAGCTTTTCTTCACTGAGTAATTATTGCATGTgcagcccctccctcccctccaagGAAACCAGTCAGTGAAACTTTGATCAAATTTGATAAACCCACTGTCAACAGATATCTATCTAGTCTGAAGTGTATGGATTGAGTGGATCTGTTATACTCCAATCTGCAATGTCATGCCAGTATAGCACTTGGTTTAACTGTTTAATGTTACTAATCCTTGCCAGTGAACTGAATCACTACACCCCCAGTGGACTAAATGCAGTTGCATCACTTGAACTTTGTCATTTCAGGTGCACAACAACAGATAGTATGTGATATATTTCAGCAGCCACCTTAATTTGAGAAGCATCTATTTGTACAGAGATATACTGGTAGGCAAAGATGGCATGTAGAGTACTGTCAACATTATGGGAATTAAATGGACCATTACAAATAGGACCTTTTTATGGTTGTTGACTTGTCTAGTGTAATCCAGGAGTTGTTTCAGCATTTTTATTGAGTTGCACGATAACACCTACAGTCCACTTTGTTCTTATTTTGTCATGAGAAATTTGTTTTTTCTAACAACATGGGTGGCTGTCTGGGAACAAAAACAATCTTTTATTAAATCACACTTAGCCTAACATGTTTACTTGATTGTAAACCTATTGTTTATTTCAACTCAGGAAGTGAGTTGAAATTCAATTCATGAATATATTTTCTAAATGGAGTTGAATTCATCAATTGAAGTTCAATTCTTTCTTTGAGTTGACTGAAGATTGAATTGATGCCAAGTACCCTATGTGCACtgaaacataaataaataaaaaactgccTTGCA

Function

GO: NA

KEGG:

id description
K16365 SGTA; small glutamine-rich tetratricopeptide repeat-containing protein alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474792 lncRNA downstream 26958 56983438 ~ 56984664 (-) True G418910
TU474788 lncRNA downstream 28750 56982650 ~ 56982872 (-) True G418908
TU474775 lncRNA downstream 53468 56955569 ~ 56958154 (-) True G418895
TU474772 lncRNA downstream 57692 56953552 ~ 56953930 (-) True G418892
TU474749 lncRNA downstream 78928 56932302 ~ 56932694 (-) True G418872
TU474770 lncRNA upstream 6278 57022218 ~ 57037688 (-) True G418890
TU474819 lncRNA upstream 24672 57040612 ~ 57040846 (-) True G418932
TU474814 lncRNA upstream 59411 57075351 ~ 57076065 (-) True G418927
TU474858 lncRNA upstream 99063 57115003 ~ 57115204 (-) True G418970
TU474859 lncRNA upstream 99970 57115910 ~ 57116208 (-) True G418971
XM_036977928.1 mRNA downstream 221 57007649 ~ 57011401 (-) True LOC110524111
XM_021603455.2 mRNA downstream 9598 56985006 ~ 57002024 (-) False LOC110524108
XM_021603456.2 mRNA downstream 9598 56985006 ~ 57002024 (-) True LOC110524108
XM_021603457.2 mRNA downstream 12703 56985006 ~ 56998919 (-) False LOC110524108
XM_021603454.2 mRNA downstream 38234 56963978 ~ 56973388 (-) True LOC110524107
XM_021603466.2 mRNA upstream 62635 57078575 ~ 57114865 (-) True apc2
XM_021603472.2 mRNA upstream 333030 57348970 ~ 57351000 (-) True LOC110524120
XM_036977939.1 mRNA upstream 428236 57444176 ~ 57457620 (-) False LOC110524122
XM_021603475.2 mRNA upstream 428236 57444176 ~ 57459501 (-) False LOC110524122
XM_036977940.1 mRNA upstream 444224 57460164 ~ 57537912 (-) False LOC110524123
TU474707 other downstream 177027 56834026 ~ 56834595 (-) True G418830
TU474560 other downstream 300238 56710280 ~ 56711384 (-) True LOC110522975
TU474559 other downstream 301782 56708798 ~ 56709840 (-) False LOC110522975
TU473281 other downstream 1401892 55608835 ~ 55609730 (-) True G417527
TU472396 other downstream 1851355 55141315 ~ 55160267 (-) True LOC110524071
TU475541 other upstream 595119 57611059 ~ 57611567 (-) True G419603
TU475533 other upstream 604114 57620054 ~ 57626174 (-) True LOC110524128
TU475656 other upstream 683805 57699745 ~ 57705936 (-) True G419714
TU476193 other upstream 1096447 58112387 ~ 58114060 (-) True G420193
TU476443 other upstream 1397188 58413128 ~ 58414143 (-) True G420421

Expression Profile