RNA id: XM_021603458.2


Basic Information

Item Value
RNA id XM_021603458.2
length 2394
RNA type mRNA
GC content 0.56
exon number 14
gene id LOC110524109
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57015928 ~ 57037694 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTCATCACTACGTAGCTGAAGCATGCCCGCACTACAGTCGCTTTATCGGCAAACACAGACTGCAAAGCGCTCTGAAAACGTTGCTACTTGGTTTTCTGGAAGATGGCACCGACAGAAGAGTTGGCATCTGGCACTGGTGCGCCAGTCTGTGCTGACAACCGCCTGCGCTGGGACCTGACCCCCGAGCAAATCAATCAGCTCTCGGATGAGGTTATTGCCAAGACCAAAAAGGTATATGACTGTGTCGGGGCCCTGAACCTGGCCAGTGTTTCCTATGAGAACACCCTGAAGGCTCTCGCTGATGTGGAGGTGGAGTACACAGTTGACCGCAACATGCTAGACTTCCCCCAGCATGTGTCCTCCTCCAAGGACGTGCGCACGGCCAGCACCGACGCCGATAAGAAGCTGTCGGAGTTTGATGTGGAGATGAGCATGAGGGAGGACGTCTACCAGAGGATCGTGGCGCTGGAGCGCAAGGTTGACGGTGACACGCTTACTCAGGAGTCCAAGAGGTACATGGAGAGGCTGATCAAGCTGGGCCAAAGGAATGGTCTCCACCTGCCCAAAGAAACACAGGATGAAGTCAAGAGGATCAAGAAGAAGCTGAGCAACCTGTGCATTGACTTCAACAAGCACCTGAACGAAGACACCACTAGTCTGACTTTCACCAGAGAGGAGCTGGGCGGTCTCCCTGAGGACTTCCTGAGCTCGCTGGAGAAGGATGGGGACAGGCTGAAAATCACTCTCAAGTACCCCCACTACTTCCCCACCATGAAGAAGTGCTTCATCCCCGAGACCCGCAAGAAGCTGGAGGAGGCCTTCAACTCTCGGTGCAAAGAGAAGAACTCTGCCATCCTGAAGGAGTTAGTGCAGTTGAGAGCCCAGAAGAGCTCCCTGCTGGGTTTCACCACCCACGCTGACTTTGTCCTGGAGATGAACATGGCCAAGTCTGGCAAGAAGGTGGCCGGCTTCCTAGAGGAACTGGCCCGTAAGCTGAAGCCCCTGGGGGAGGAGGAGCGCCATGTCATCCTCAAGCTGAAGAAGGAGGAGTGCCAGAAGAGGGGCCTGCCCTTCAAGGGCGAGTTATACGCCTGGGACACACGTTACTTCATGACGCAGGTGGAGGAGACCCAATACGCGGTGGACCAGAACCAGCTGAAGGAGTACTTCCCCATGGAGGTTGTGACCCGGGGCCTGCTGGACATCTACCAGGAGTTGCTGAACCTCACCTTTGACCTGGTGGAGGGGGGCGCCCCCGTGTGGCACGACGACGTCACCCTCTACTCCGTCAAGGACCGCACCACGGGCACGGTGGTGGGCCAGTTCTACCTGGACCTCTTCCCACGCGAGGGGAAGTACGGCCACGCGGCCTGCTTTGGCCTGCAGCCCGGCTGTCTGCTGTCGGACGGGACCCGGCAGATGGCGGTGGCGGCCATGGTGGCCAACTTCAGCAAGCCCACGGCCGACGCCCCCTCCCTGCTGCAGCACGACGAGGTGGAGACCTACTTCCACGAGTTTGGCCACGTCATGCACCAGCTCTGCGCTCAGGCGGACTTTGCCATGTTCAGCGGGACACACGTGGAGCGGGACTTTGTGGAGGCGCCGTCGCAGATGCTGGAGAACTGGGTGTGGGAGAAGGAGCCCCTGCAGCGCATGTCCAAACACTACAAGACGGGTGCCCCAATCCCTGACGACCTGCTGGACAAACTCATGAAGTCCCGCTTGGCCAACACGGGTCTGTTTAACCTGCGTCAGATCGTCCTGGCCAAAGTGGACCAGGCCTTACACACCAAGAATGGGCTGGACCCGGCCGAGGAGTACGCCCGGCTGAGCCAGGAGATACTGGGCGTGCCTGCATCCTCAGGAACCAACATGCCAGCCACATTTGGCCACCTGGCGGGTGGTTACGATGCCCAGTACTACGGTTACCTCTGGAGCGAGGTCTACTCCATGGACATGTTCTACGCCCGCTTCAAGCAGGAGGGCATCATGAACCCCAAGGTGGGGCTGGGCTACAGAAACTGTATCCTAAAGCCCGGAGGCTCGGAAGACGCTGAAATTATGCTCAAGAACTTCCTAGGGAGGGAGCCAAAGCAAGAAGCTTTCCTCCTGAGCAAAGGATTAACGGTAGAGCTGGAGGCAGACACTCCATGTGCCTGTTGACCAATCAGAACCAGCTCAGTGTAAAcgcccaccccaaccaatcataTACTTGGGACACGGGCACAAGGGACATACATGTTCTAGAAAAAACAATGAAAACAAGAATTGATGCATGCTATTTCACCCTTTTGTGCTgtgtttttttgattttttttagtTTGGAGATGTTTTAAACTATTATATGCAAGTAAGGTTGAACAAAATACATTAAGAATTGACTTGACCCATT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01392 THOP1; thimet oligopeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474102 lncRNA upstream 757 57013617 ~ 57015171 (+) True G418295
TU474104 lncRNA upstream 4864 57010186 ~ 57011064 (+) True G418297
TU474059 lncRNA upstream 50508 56963994 ~ 56965420 (+) True G418252
TU474072 lncRNA upstream 73263 56942425 ~ 56942665 (+) True G418265
TU474071 lncRNA upstream 73969 56941754 ~ 56941959 (+) True G418264
TU474130 lncRNA downstream 2042 57039736 ~ 57039941 (+) True G418323
TU474195 lncRNA downstream 105287 57142981 ~ 57143200 (+) True G418379
TU474215 lncRNA downstream 132541 57170235 ~ 57170470 (+) True G418399
TU474247 lncRNA downstream 190160 57227854 ~ 57231401 (+) True G418428
TU475028 lncRNA downstream 312371 57350065 ~ 57350974 (+) True G419132
NM_001124203.1 mRNA upstream 59606 56943843 ~ 56956322 (+) False LOC100135807
XR_005051970.1 mRNA upstream 60466 56955324 ~ 56955462 (+) True LOC118964777
XM_021603443.2 mRNA upstream 227275 56779858 ~ 56788653 (+) True dph5
XM_021603437.2 mRNA upstream 313772 56696618 ~ 56702156 (+) False serpinc1
XM_021603438.2 mRNA upstream 313772 56696637 ~ 56702156 (+) True serpinc1
XM_036979052.1 mRNA downstream 1423 57039117 ~ 57061390 (+) True nwd1
XM_021603461.2 mRNA downstream 27218 57064912 ~ 57074678 (+) False LOC110524113
XM_021603463.2 mRNA downstream 27218 57064912 ~ 57074722 (+) False LOC110524113
XM_021603464.2 mRNA downstream 27218 57064912 ~ 57074724 (+) False LOC110524113
XM_021603462.2 mRNA downstream 27218 57064912 ~ 57074726 (+) False LOC110524113
TU474030 other upstream 57763 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 90752 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 286107 56726185 ~ 56729821 (+) True G418119
TU473866 other upstream 387311 56617890 ~ 56628617 (+) True G418077
TU472519 other upstream 1690657 55324645 ~ 55325271 (+) True G416857
TU475029 other downstream 327670 57365364 ~ 57367337 (+) True LOC110524119
TU475377 other downstream 846686 57884380 ~ 57899648 (+) True G419452
TU476101 other downstream 1375429 58413123 ~ 58416776 (+) False G420117
TU476694 other downstream 1905034 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 3656563 60694257 ~ 60695905 (+) True LOC110524226

Expression Profile