RNA id: XM_021603463.2


Basic Information

Item Value
RNA id XM_021603463.2
length 1959
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110524113
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57064912 ~ 57074729 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGCAAAGCGGATTAAGGAGACGAAACCTGTCCCGTCAGCGGATTTGAACTGCGCGAGGACTCAGATTTCCACAGGGAAAATATAGTTTATTTATATGTTTATTTTTAGAATTTGGCCTTAAGAAACTCCGAACTCTGTAACCCGTCACCATGGGTATCTCAGAAGTACTTAACAAACTTCGAGATCGCGCAGATAAATTTCTAAATGAGAAAAACATGGTTACAGATTTCCTTGGAAAACTGGAGGAGAAAACGGGAATCAAGAAAAAAATTATTGCCCTAGGTGCAGTGTCTCTGACGGGACTGTATTTGGTATACGGCTATGGAGCCTCCCTCCTCTGTAACATGATTGGATTTGTGTATCCTGCATATTACTCAATCAAAGCCATTGAGAGCacaaacaaagaagatgacacaAAATGGCTGACCTATTGGGTCGTCTACGGAATCTTCAGTTTGGCGGAATTCTTCTCTGACATCTTCCTCTACTGGTTTCCTTTCTACTATGCTTTCAAGTGCCTGTTCTTGTTGTGGTGCATGGCCCCCGTCACGTGGAACGGCTCTCAGATTCTGTACAACCGGGTGGTGCGGCCCTTCTTCCTCAAGCACGAGGCCACCGTGGACAGCATGGTCAATGACCTCAGCGGGAAGGCCATGAATGCAGCCGAGTCCGTCACCAGAGAAGTCCTTCAATCACTGGTGAAAAACAAGACTATAGTACCCAGCGCATCAGGGGCCAAAGGCTTACCCAGCGCATCAGGGGCCAAAGGCTTACCCAGCACATCAGATGCATCAGGGGCCAAAGCCTTACTCAGCACATCAGAATCAGCTACCAACAGGTAGAGGCATCCAACCAAGACAAGTCTCAGTGATGGTACTGATGACAGCAAAGCAAACCATGCCAGATTCACAGGAAAGACTTTGGGTTTCCATGTTGAATTGCAAACTGCTGAACCACTAATACTTATGATTGGAAAACAATGACACAAGTCTGACAGAGATTGGGATACCATTACACAGACAGATAACGGGACATGAAAAAAACATAACCAAGGTAAAATTCTGCTTTATAATCGACCAAAACCATTGCAACTGAAAAACACTTCACATCCGCAAGGTTGTGGGTGGTTAGTTGAATGGTATGCAATGTCTGATATTTTGACCTTCTCATCACCTGATTAGAGTAACTGAATTTAAACTGGTCTTTGGTTTACAATCAATGCAGTGTCCTTGTCTGCAGGAGTGTGTGGGCTCAATGTTTCAACAATAGCCCACAGTGTTCTGGTCTTGGACTTCATTGCTTTAGTTTTCACCGTTGTTCTTTGTTTCTTTTTGGAcatgtttttctctctttgtgtctTGTAACAGTTTTGTATAGTCGGATCTAGGCCATATGAAAATGAAATTGACACATACCTCTACTGTAAGTTAGAAATGCATTGGGTCTTGGAATCCTAGTGATATTGTCCAATGGTAAATACTAGTACTGTGTATTTAACCAATCATTTAAGTTGAAGGAGAAAGGGTAATATATGGTACGTCATGAGTTAGGCAATTAAGTTATTTCAAAAACAGTCCTTTATTCCTTTTATTATACATGTACATATGTTGTACTCTCAAAAGGACGTAAAGTAAGTTGTACCTTGTGTATCAATAAAAGTGTCCTCTTCTTATTCAGTGTATTGCTTGTCATTATGATGATCACTGATTCTTTGGCATGGATCATAGGAACTAATGCTGcgttcaaagcaactgggaactctgaaaaatacgagacaaatcatgacgtcagtgatcttccgGTCGATGAGTCAGAGCTCTAAAAagaattgtgtgaattgtttgctgtTAAAGACTGTGTGATAACCTCTATATGCAATATTCCAGTCAAGGGAAAAGTAACATACCTTGGGATTACCATATCTTAGGATCAACAGGAAAGATGCTCATTAGATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474130 lncRNA upstream 24971 57039736 ~ 57039941 (+) True G418323
TU474102 lncRNA upstream 49741 57013617 ~ 57015171 (+) True G418295
TU474104 lncRNA upstream 53848 57010186 ~ 57011064 (+) True G418297
TU474059 lncRNA upstream 99492 56963994 ~ 56965420 (+) True G418252
TU474072 lncRNA upstream 122247 56942425 ~ 56942665 (+) True G418265
TU474195 lncRNA downstream 68259 57142981 ~ 57143200 (+) True G418379
TU474215 lncRNA downstream 95513 57170235 ~ 57170470 (+) True G418399
TU474247 lncRNA downstream 153132 57227854 ~ 57231401 (+) True G418428
TU475028 lncRNA downstream 275343 57350065 ~ 57350974 (+) True G419132
TU475031 lncRNA downstream 283267 57357989 ~ 57358207 (+) True G419135
XM_036979052.1 mRNA upstream 3522 57039117 ~ 57061390 (+) True nwd1
XM_021603458.2 mRNA upstream 27218 57015928 ~ 57037694 (+) True LOC110524109
XR_005051954.1 mRNA upstream 38452 57026325 ~ 57026460 (+) True LOC118964761
NM_001124203.1 mRNA upstream 108590 56943843 ~ 56956322 (+) False LOC100135807
XM_021603467.2 mRNA downstream 2078 57076800 ~ 57078287 (+) True c5h19orf25
XM_021603468.2 mRNA downstream 41618 57116340 ~ 57133661 (+) True diras1a
XM_036977932.1 mRNA downstream 126034 57200756 ~ 57264453 (+) True LOC110524118
XM_036977937.1 mRNA downstream 277621 57352343 ~ 57367627 (+) False LOC110524119
XM_036977936.1 mRNA downstream 277622 57352344 ~ 57367623 (+) False LOC110524119
TU474030 other upstream 106747 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 139736 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 335091 56726185 ~ 56729821 (+) True G418119
TU473866 other upstream 436295 56617890 ~ 56628617 (+) True G418077
TU472519 other upstream 1739641 55324645 ~ 55325271 (+) True G416857
TU475029 other downstream 290642 57365364 ~ 57367337 (+) True LOC110524119
TU475377 other downstream 809658 57884380 ~ 57899648 (+) True G419452
TU476101 other downstream 1338401 58413123 ~ 58416776 (+) False G420117
TU476694 other downstream 1868006 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 3619535 60694257 ~ 60695905 (+) True LOC110524226

Expression Profile