RNA id: XM_036977935.1


Basic Information

Item Value
RNA id XM_036977935.1
length 2934
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC110524119
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57352343 ~ 57367627 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCATTGTTTGCTTAAACATGTACCTAATGAGAGTGCTAGAACAGTGATCAGAAAGCCGTATGTACAGTGAGGCTATAATAAAACGTTATTCTTCTTAGCGTGGAGTGCCGTTTAGTGGCCAATTGAATATCTACACTCTCGAAGACTGATATTGATTCAGACTAGTCGCGCTTTACACAGTATCAAGTGTGGCCCGGTTTGGAGACATTCGCTGATTTGTTCCCTGATCTGCTCCCAATTCTGAAATCACGCGTTTCACGCTAAATGAATGTAAACTAAATAGACAATGGGGACAATTAGCAACCACTACTTGATACTGCAGTAGTGTAGTTCAGGTTTGATAGGCTTATATCATAAATTGTCAAGCGACTGGAAAGGCTTATCTTGAGCTGTGAATAGCGCAGCTGTGATGAAATCAAATTATAGCACACTAGTCCGCAAATACAATCTAGTCTATCgatgttcttcttctcttggTGAAGatgtcatgcactgtcaactttgtaGCAGTTGATCAATTCCTTGATAAATCGGCGGATTATGTTATTAACAAATAGATGTGACTGCTTAGCCTATATTTGATCGTTAGTATTTCTGGGCCCCGAATTTCTGAACTCATATCGGTGTGAAACTCTAGTCACAGATGAAAGGGAACGTTCTAATCTTCTGCCCAAATCCATTCCGAACGGTATCTGATTATAAGGGGGGAATTGCGTGCTTTAAAAAAACCCAATTAAGAAGTAATTTTGGTAGACCTGCAGCTTGTAATACAGAGGTCTCGCGTTCTTCATCTGGGGTGCATGGAAAGACACCCTGGGGAACTCACTGTGGTTATCCTAACACGGTAATTAATATTGAGTGCCAACCAGAACTCTGACTTTCCGACAAGATcattgacgtcatgatttgaccccgtatttttccgagttcccagttgtcatgAACGCTACATTAATGTAGCCTAACTGTGAACTCGGGAAAAAAACGTGGTCAAATTATGACCTTCAAGTCGGTGCTCTAGACAGATGCCATAGTTTCCtacttggaattccaagttggatgacggTTCAAAACTCATTTTCCCTACGTTTGTAGTTatcttgaacacactgaagtcggATATTTCCGAGTTCCCAGGTGTTTTGAACGCTGCACAATCAAAGTGTTTGCTACTAACATTGACAATGGCATAATGTCACGAAAACTATAATAAGTTAACACGTGTGTTTAATTCAACTAGCTAGTTATGGATGAATATTATGAAAGTATTATTTTCCGATGTGAAGGAGTCGAGGATAACGTGTCTTTAGCTGTGGCTACTGACGACTCCGCACTGGTAAAGGCCTATGAAGACGCCCTCCGAACATTTCGGAGCTGTAATGATGAAAAAGAGAGCAAAGAGAAGCTTGGAAACAACCCACCGAAATTGACAGACTCAAAACTCCCCAAATCTCATGTGTTGAGTAAGGAGCCGGTTGAACCAAAGGCAAACTCAAAGAGGGCCGAAAAAGAGAGCGGTGAGAAGCTTGCAGACAATCCGCAGACGCTGTCTGAATCATATGTGCCAACCAAAGGACCAGTTGACCCGAAGACCAACTCAAAGGTGTGTAGGCAGGGATACCGGTGTCGTGCGGTGTACTCCGAGGATGGCCTGGTCTACCCAGCAGTGCTGGTGTGGTTGAGAGGCGAACGCTGCCGGGTGAAGTTTGAAGGCTACGGGAATGAGGAAGAGCTGGAGCTGAGCAGCCTGCTATCTCCAATAGAACTGGGAGGCCACAGAGGAAGAGTTGATGCCAAAGTGCAACAAGGGGCTGTTGATGGGTTCAGCTCCACTAGTAACAACATTGCTGATTGGAAGAGGATGGAAAGAGATTGGAAGACACCTCAACAAGAGGGACGAGAGGAGCTGTCCTCACCTCAGCCACCTAAGTTTGCTCCAGAAAAGACTATGGCAAAAGCAGCTATGACTTTGGCAAGGAGCATGGGGTTAAGAAGAAGCCAAGTGGCCGGCGAGAGGTACCAAACAATCACCCCTTTTCCTTCTTTCCTCCAGTGCAACCGCCCAAGGACTCTCTGGacttcctgcctcctcctcctccacctcctccaccgtgTGTATGGCCCCCCCGAGCAGTGCTGGCCGATGCTAGCGATGGGCTAGACTCAGCCGTGACAGACATATCCAGCATGCTCCTGTCCTGGTACCTGTGTGGCTACCACACCGGCTGCTACATGGCAATGCAACAGACGAAAACAAGTCGCAGGAGGGCTGATAAAGAGAAACTGGCAGAGGAATAAGGTAAAGTGATATACCTTCATGCGGTTTCAATTCCAATTCCACTGCTTTATCAAAGGTTattttaaatatttgaattggGATGTGGGATGGCACTGACACTATCTATCGATTAAAACTGTAGGTCTATTTGAATCTTACAAAAGTAAAGGCCTAAGTTTTGCAGTCACTGAAGATTGCAGGCTGAGTAATTCTCGTATGAGGATATATTAGGACCGAAGATACCACCCTGGGGAATTCCACAGTGTGATGCGGATCAGCAATGTGCAGTTGGCAAAGGTGCAAGAATTGGGAAGTTGTGCGAGTGTTCACGGGGAACGAGGGAATCGAGGATGACAGCTACCATCTGATCAATCATCACACTGTATGAGGACAAATGGTGTTTTCTCAAATGTTTCTCTTTTAGATATGTAAATGCTTAAGAATTTAATAAACGTTTTTGAAGACTTCTCTTTAATTAAAGAAGTAAACGTCTTTACTACCTACATCTCTGCATTGAAAATGTTGGGAGATATTACTCTAGAGGGTGCAACAGAGCTGAAATTTCAAGAGGCAAAAAATGTCCACGTGAAAAGGAAACTACCACCTAtttttattaataataataaatacaaatattaagGCATTGTATTATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475028 lncRNA upstream 1370 57350065 ~ 57350974 (+) True G419132
TU474247 lncRNA upstream 120943 57227854 ~ 57231401 (+) True G418428
TU474215 lncRNA upstream 181874 57170235 ~ 57170470 (+) True G418399
TU474195 lncRNA upstream 209144 57142981 ~ 57143200 (+) True G418379
TU474130 lncRNA upstream 312403 57039736 ~ 57039941 (+) True G418323
TU475061 lncRNA downstream 11697 57379324 ~ 57379533 (+) True G419159
TU475189 lncRNA downstream 237954 57605581 ~ 57609228 (+) True G419276
TU475191 lncRNA downstream 243156 57610783 ~ 57611584 (+) False G419278
TU475192 lncRNA downstream 243156 57610783 ~ 57611756 (+) False G419278
TU475193 lncRNA downstream 243156 57610783 ~ 57611633 (+) True G419278
XM_036977932.1 mRNA upstream 87891 57200756 ~ 57264453 (+) True LOC110524118
XM_021603468.2 mRNA upstream 218683 57116340 ~ 57133661 (+) True diras1a
XM_021603467.2 mRNA upstream 274057 57076800 ~ 57078287 (+) True c5h19orf25
XM_036977929.1 mRNA upstream 277615 57064912 ~ 57074729 (+) True LOC110524113
XM_036977930.1 mRNA upstream 277617 57064912 ~ 57074727 (+) False LOC110524113
XM_021603473.2 mRNA downstream 12470 57380097 ~ 57427323 (+) False LOC110524121
XM_021603474.2 mRNA downstream 12470 57380097 ~ 57427323 (+) True LOC110524121
XM_036977948.1 mRNA downstream 259678 57627305 ~ 57636788 (+) False tmem259
XM_036977947.1 mRNA downstream 259681 57627308 ~ 57641111 (+) False tmem259
XM_036977946.1 mRNA downstream 259682 57627309 ~ 57641111 (+) True tmem259
TU474030 other upstream 394179 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 427168 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 622523 56726185 ~ 56729821 (+) True G418119
TU473866 other upstream 723727 56617890 ~ 56628617 (+) True G418077
TU472519 other upstream 2027073 55324645 ~ 55325271 (+) True G416857
TU475377 other downstream 516753 57884380 ~ 57899648 (+) True G419452
TU476101 other downstream 1045496 58413123 ~ 58416776 (+) False G420117
TU476694 other downstream 1575101 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 3326630 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 4353910 61721537 ~ 61722024 (+) True G423922

Expression Profile