RNA id: XM_021603473.2


Basic Information

Item Value
RNA id XM_021603473.2
length 7893
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110524121
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57380097 ~ 57427323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCAAACTTTTCAACATGGCGACACAACAAACGGAAGCGATCGAAGCAATGGAAAATGCGAACCGAACTTCGCATCCTGGCTTCAGTAACGACAAGTATTCTCTGCTCGTCATTGTCGGTGGACATAGTCGGACTGGATTTGTGGACTACGTGGtggcagagataaagagagGCATCCGCTCATGGGATGTGGACCTGACATTCTGTAACCTGGACGAGCAGCTCAAGCTCTTTGTGTCTCGACACTCTGCCTTCTTCTCGGAAGAAATAAAAGGCCAGAGGACACTGCAGCACAGTGGAGACGTTCTAGACACCAAGGTGGTGGGGAACCCATCCCATGAGTTGGTCTGCTCAGAGGTGCGCCGGCTTATATCTGACGTGTCTCGCCACAAGTTGTTGGTTCTTGCTGGACAATGTGTCGAAGAGGCAGGAGACCTGGTCTTACAAACAGGATGTTTCTCTCTCAGTGACTTCATTCAGATATTTGCTGATGAAGAGATTGGAGAGTTATTGAGCTCGGCAGACCCTACACAAAAAGCTAGCCTCACACTGAGTTGTCCTAACACTGGAGTGTGGAAGAACTCAGTGTTGGAGAAACACAACCTACAAGACTTCATTGACATCAAAACAAACCTGCCATCAGTGCTACCTGAAATGGAAGGTCTGCAGGAGTTCACAGAATACCTCTCAGAGTCCCTGGAGCCACAGTCTTCTTTTGAGCTGCTGGAGCCCCCCAGTACTGTGGGCTTCCTCAAACTCTCCCGCCCCTGCTGCTACGTATTTCCAGGTGGGAGAGGAGACTCTGCCTTCTTTGCTGTTAACGGTTTCAACATCCTGGTCAACGGTGGGTCCGATCCACGCTCCTGTTTCTGGAAACTGGTTAGACATCTGGACAGAGTTGACTGCTTGCTCCTCACCCACATCGGTACTGACAATCTTCCAGGGGTGAACAGTCTTCTCCAAAGGAAAGTGGTAGAACTGGAGGATGAACAATCTGCCGACTCTCAGATCAATGAGGACTGGATGAAAAATCTAATTTCTCCTGATATTGGCATAGTTTTTCTTAATGCTCCAGAGAGATTGAAGTCATTCGAGGGTGATCCCAAAGAACTGCGGAGCTGCGATCAGGTGGCACTCACGTTGCAGCACCTTGACAGGCTAACAATCAATCCAGAGCCTGTTAGTCGCTCAAATGGACCCACCATTGAGCCTGTTATACTTTTCCAAAAGATGGGAGTCGGTCGTCTAGagctgtatgttcttaacccAGTCAAAGGCAGTAAAGAGCTTGAGGCTTTGATGAAGAACTGGCCTGGCAATGGATCTAACATGAAAGGCTCAGAGATACCCCTGCCTTGCCTTGTCTCCATCTGTGCTCTATTGGTGTGGCATCCTGCCAGTACTCATGAGAAGATCATTCGAGTTCTCTTCCCTGGGTGTACTCCGCAGGCCAAGATTCTTGAAGGACTTGACAAAGTAAAGCATTTAGAATTCCTGAAACACCCCGCCGTGAGCCTTAGGGACCTTGAAGCATCCAAATCAGATAAACAACCAAAACGTGCAGAGAGTCGGGAGAGCCTTAAGTCCCTTCCCAAGGACTCCAGACCTAGCAGTGCCTTGCTGAAGGACAAACTTGGACGTGGGGACCTTAGGAAACAAGACGTGAAGACCAAGCCCAAAGGCCCAAGTGACATTGCTCCTAAAGAAAAGGAAGGGGATGAGAAGTTGAAATTGAAGGATGTGGATGCTAAACAAAGACTTCCAAAGCCTGAAAAGCTTATGACAAAGAAGGAACCTTTAAAGGATGAGAAAAAAGAAGTCAAAAAGAGGGATGAGAAAGCCTCTGCAGGTGTTGCCAAAAAGGATGAGAAtgtggagaaaaagagagaaccaATTAAGAAAGAACCTCTTGGTCTAAAACCAAAGAAAGACGTCAAACCTGATCCAAAGAAAGAGATCAAGAAGGAAATCAAGCCAGATGAGAAGAAACCAACAAAACCTGTCAGCAAGGATGTCAAAAAAGTGACAGCTGGACCTTCATTAGGAAACGCAGAAGCAAAAAAAAACGTAGGCAAGAATGGAACTTTGAAGAAGGATGCAATCCCCAAGAAAGACTCATTGAACAAGGGGGGAAAGTCAAAGACGAGTAAAAAGACAGAGAATCAAAAAGCTTCAGCCTCTGAAGGAGATGCGGATCGTTCTAAGATGTCAACGCCTGAAGACATGACAGCGGAATTCGAGAAGCTCAGAGCAGAAAATGGAGAGTCAGAGAAAAAGACTGCTATTGCAGTGAGCACTATAGCTAACAATGAAGGAATGGCGCAACCTGAAACAGAGAATGGATCAAGAGAAAATGCAGAGAAGGGAGACATCTTGGAAAGTCCAGAAAAGTTCCGCTGCATGGAGACACTCCCAAATCCAGAGAAGGCCCTGGGAACCACTTCACCTCTTGCCAAAACTCCTAAAAGTGACCGCAGTGTAAACTTTGATATTACACCAACTGAATACAGACTTCTTGATGGGGCCCTGCGAAATGGACAAGATGCATGTGCCAGCTCAGATGAGAAGACTTTAGAGTTGGTCTCCCCTGCTGACTCAGCCCCTAATAGCGCTGGGCATACCCCTTTCCACCAATCACCTGAAGAGGATGCTCAGGGCTCTGGTGAGGACAGTAGTCTCGGGGGAAGGGTGCCTAGCCTTGGGTTTGAAGACTGCCATGTCATGGGTTCTTGCAGGAACTCTGAGGTAGGCTCCTTGAAGGGGAACCTAGAGAACTCTACATCGTCCCAGGAGAAGCAATCAAGCCTTTTGACACTGAGTCCCTTCATGCTGCCGGACTCTGTCTCCCCTAATATTACCTCTATGCCTGCTGAAATCGGTTCCCCACACTCAACAGAAGTTGATGAGTCTCTTTCCGTGTCTTTTGAACAGGTGCTCCCATCTATTGATGAGTCACCCAAGGGAGACCATATGGACAGGTCCTACTCTAATGGGCATTTTGCTGATCCTGACCCCAAAATGGGGATGTCCTTACCTTTGAGGGCATGTCATAACATGCGTCCGCCAGGGGACGGCTCAGAGGAACGCCTTACTGGATTTCAGGGTCTTCTCCCTGACGTTCCCCATGACGTCGACCTCTGCCTGGTCTCACCTTGTGAATTCAAGCACCCGAAATCCCCAGAGAACCAACAACAGCATCTGTCTCCGGGGCTAGCGACATGTAGCCCGCGAGAACTATCAGAAAACAGCGACCACTCCCAGGACCTAGCTAAGCCACAAAGCGTCATTCATAGTGATCGACATTCACCACAAGGTCAGGAGACTCCACCCACATCTGCTAGTGAGTCCCTCAACACAGCCACAGATTCAGACATACCCCCAGGGACTGAAGACTGCCCCTCCATCACTGCAGACATGGACTCTGATGAGGATTCTGGGAGTTTCCCACCCCACCATCCACACGACCATCCCAGCTCTCACTCCTCCAACAGGGGAGCTCAACATTCCTCTCAGGACCCTCCCCCAGCCCCAATGAAGGACCTGCCACCCTTGCCGCCCCAGCCCGGTGCCTGCATGGCTGACCCTGAGGCTGATGCTCCAAGCAAGACCTCAAAGAGCAGTGCCACAAAAACCAAGAAACCAGCTGGGGTCACACACAGGTTAACGTCAGCCACCAGTACGACTCTGAACAGCAAGACCAAGACTGGCGGCACAACTGGTACGTTGAAAATCACCTCAAGTCTTGACACAAGGCCTTCATCCCGCAATATCACTAATGGCTCCAGACCTGGGACTGCAAGGTCAACTTCTTCAGGTTCTGTGGGCAGCAAGGCCAGTGCAGCTGGAGGGGCACCAGTTTATTTGGACCTGGCTTATCTCCCATCTGGTTGTGCCTCTACCACCATTGACGTGGAGTTCTTCCGACGCCTGCGCTCCTCCTGCTACATCGTCAGTGGCAATGAACACCTGAAGGAGTCTGTCATGAGACCTATTCTTGATGCCCTACTGGACGGGAAGACAGCCTGGCCCGATGTGCAGGTGACCCTGATCCCCACTTTTGACTCACTGACGATGCATGAGTGGTACCAGGAGACCCACGAGAGGCAGGGGGAGCTGGGCATTACCGTGCTGGGCAGCAACAGCACTGTGGCCATGCAAGAGGAGACCTTCCCTGCGTGTAAAGTGGAGTTCTGAGAGAGAACAAGATAAATCTTCAGATCCCTGCACTCTTATCCACCAAAGTATCTCCCTCACTTTATCTTCTCTTAAATTGTGATGGACTCGTTTCCCCCCTCTAAAATGACAATTTCCCACCCTAGCATGCATCACGTATAGCCTGGTGGATTAGCAGGCTTTTCTCCTCCTTTCAATCTTATTAATATAGAGCGGACTCCAGCATCTTTGCCTGGGTACATATATACCATGGATATGAAGGCAGAACATGATGATGTCCAAGAGTCTTTGTTCTACCAACATGAAGAAATGTTGTTCATTATGAATGCTAGGTAAGGTGGACTTAGAAGACTGGCAATACTAATCGAAGTTCCTCACACTTCTTATCAGCAGCCAGGTAGTTGTGATCCAAATCCCCAACAGCCCAGAGAAAACTAGTCGACAGCTGTAGGAAACCCTCTGCCTCCCTGGGGCTGAACTCCTGAGTTCTTCCTTCAACGATGAATCATTTCATCCGTATAGCATTTCATAGGTATATTTAGCCCTGCACCCATTTGCACAGTTATCAATTTCCACAGACAAGGGGACCGCAGTGAGAGAATCAGTGTTACAATAGAATAGGATGTCAGTCAAAAACTTTAAAAAGGCAGAGGGTGTGTGAGAGGAGGTGAAGATGGGACCTTTGTTGTCTCCTGGTGCACATGTAGTCGTGCAGAGACTTACTGAAGGACGACGGCATGTTGCTACATCCCATTTTGAGTTTCATAGACGGTCTATGAACATTATAAGGAGATCGCCAATGTCTTGGAAGGTAATGGTATGCATGTGAACAGAAGGATTACTCTGACATTGATAAAATAATGGAAGTCCACGTTTCAAGAAATCATGAAATGTGCAGTATTTTTGTGCAACATTCAGATCAGTCACTTTAACCCTTCATCTAGAGCGCATACTGTGGTATACTCTTTTGACagtgtgtttttaaatgaaaTGGCTTGGTAAATACTAGGTAATAATTTGTACTCAAAATAAATACTCGTAAGTAGTTTTAGATGAAAGTCAATAGACAATTGAGTCATTTATGTACCAACTCGCATGACTGAATTACAATTCTAGTACCGAGTAGTTATTTCATGAAAAAATGCACTTTCAATGAAGTgttaacagtacagtatatttccacactaATAAACCAACTGTATCCAAACTTCTATTTGAGTCCCTCTTCAAGACCAGAGTTGTTTTTATCATAGTGAAGCTGCATGATGTTACCATCCTTTAATTATAATTATAAACTGGGAGGGTTGAGTCCTGACTGCTGATTTTCTGAAAGCCGAGGTATCAGACCAAATACCATAGGTatttccccaaaaatatttttgttgttctaattaagttggtaaccatTTTATAATAGCATTAAGGCACCTCTTGGTTttttggtatatggccaatatactacagCTACtgtctgtatccaggcactccgtgtttcgtcgtgcgtaagaacagcccttagccgtggtatattggccatataccaaacTTCCTCGAGCCATGTTTCTTAAATATGCCATGTCAATGGGACCACTAAATGTCACATGCGCCAGAGGTTAAGCTTCACTGAAGAGGGATTCACAAAATGAGAAGTCATTAGCAATACTTTGCAAGACAGTCCATTCCATTTATCACAGAGTGGTTATTATTGTGCCTAAGTGAACTAAAGGAAATGCTAAACATGATTTTTAACAAGAACGGGAAATCAGTTATATCAGCAATCGCTTGTGTATCTGGTTAATTGCAGTAAAATGTAAATGATGTTATCTGTGAATGTCGACGCTTTTAGCTCTCTATCAAAGCAGATTGAGTCCAAATGCATGTCAGCACTGCTTGCACAGCCATGCCCACCACTTTGCTTGCAGACCAAGCACTTGTGTTATATTGCTCTTtgttacaaaatatattttaattttattCAAGGAGAAGGGATATGAAAggattttaaactttttttttcacTTGGGTTAAATGTTATTCTTGgagaaatgtacttgtttttttgttttttacttaCACTTGAAATTATATTTTTGGGCCATGCTGAGTTGTACAAGCATGCAGATCTCACAAGTTAAAATCTAATTTGAATTCAATTAAATGCCATGGCTCTTTGAGAGCACCTTGTACATTTGAAAATATCATGTGAAAAGGGTGTGTTCAGCCAGCCACATGTTGGCAGATCATATAATTCTAATTATTTCATACAGAAAAATGTAGTGTCATCTGTTTTTCTTTTATCAATCCATTagcaattctatttttgttttcccTAAATTGAGTTTTCTGTATATCAATAATGTGGTGTGGCTACTTTATCACTTACTATCATTTGATTAGCAACAGGCTACTCGCATGATATCATTAGCCAATGGCCGGACACAGTAAGTGGAACCGAGCTCACATTGTCACACGGAAGAGTGTTTAACAGCAGCATGTTTTTTGGTACTAGCTATAAGTCTGAGCAAAAAGGATTGAACGTGGATTGCATGACACTGATCACTTATTTGGATAGCTATTTCACACTACTGGAGTTAACGTTTGACAATCCATCATGTCTGTATTTGTGTGCACCATATATCACGACATTCTATATATCAGATTCTGGACTCAATGCATTGGTTTGGATATTGTGTGTCTCGTAACACCCGCTGTTGTTCATAACATGACTTGGCTTTGTTCTCAAAGATGTGTCCCAGAATGTCTACTACCACCTATTGATTCTCCCTCCTTGTCACAATATTCTGAAAGCCATGTTCAGTGGTATATTTGGCTCATTGGAATCAATAGAAGAACAAAATAATAATTCTAAAGAATGGtcctgtgtttctctgtttccGTCCCTGCCCCATTATAATAAAACTAGGTGAATGAGAAACCTCTTGTCGAAATCTGAGGCACTCCTGCGCTTCAGTCACAATTTAAGTGACCGTAGCACTTTGCATGGACATAGGTGTTCATATCTGTAAATCACGCCGCAACATAACTAAACCCATTGAGATTAATATGTTCTATTGGTCTTTGGCAACCAAATTGAACAGCACATTTTGGGAGATGAACAGCACATTTTGGGAGATGATTTCTTTAAAGcctttatatttcagtttttggtGCTATATTTTTTTATACTTAGACACCTCTTTTCCCTTGCACCTATACATGTATGTTTGTCTATTTACATAACCTGTTGGTGGTTAACACATCCCTTGCAAGTGTCTGGAATTCACCTAGGAAATGCTATGAATGTCTGTAAAAATGTCATTAGACTGTTTCAGCGGTGTCACGTGAGTGTGGTGGTTAGATTAATAATGACAGGGTGGATTGATTCAGTATTGAAACACTAATtttagttttattttattttgcagtgtatatatataccccttttataaatgtgtgtgtgcttaATTGGTGTTGTTTCCCTGACTTTCAACTTTCAAGATTGGAAACCATGaccttggggcggcaggtagccttgtggttagagctttggacttgtaaccaaaaggttgcaagatcaaatccctgatctgacaaggtaaacatctgttgttctgctcctaaacaaggcagttaacccactgttcataggctgtcattgaaaataagaattttgttcttaactgacttgcctagttaaataaaggtaaaatttaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475061 lncRNA upstream 564 57379324 ~ 57379533 (+) True G419159
TU475031 lncRNA upstream 21890 57357989 ~ 57358207 (+) True G419135
TU475028 lncRNA upstream 29123 57350065 ~ 57350974 (+) True G419132
TU474247 lncRNA upstream 148696 57227854 ~ 57231401 (+) True G418428
TU474215 lncRNA upstream 209627 57170235 ~ 57170470 (+) True G418399
TU475189 lncRNA downstream 178258 57605581 ~ 57609228 (+) True G419276
TU475191 lncRNA downstream 183460 57610783 ~ 57611584 (+) False G419278
TU475192 lncRNA downstream 183460 57610783 ~ 57611756 (+) False G419278
TU475193 lncRNA downstream 183460 57610783 ~ 57611633 (+) True G419278
TU475221 lncRNA downstream 225841 57653164 ~ 57653374 (+) True G419300
XM_036977937.1 mRNA upstream 12470 57352343 ~ 57367627 (+) False LOC110524119
XM_036977935.1 mRNA upstream 12470 57352344 ~ 57367627 (+) False LOC110524119
XM_036977933.1 mRNA upstream 12472 57352344 ~ 57367625 (+) False LOC110524119
XM_036977934.1 mRNA upstream 12473 57352344 ~ 57367624 (+) False LOC110524119
XM_036977936.1 mRNA upstream 12474 57352344 ~ 57367623 (+) False LOC110524119
XM_036977948.1 mRNA downstream 199982 57627305 ~ 57636788 (+) False tmem259
XM_036977947.1 mRNA downstream 199985 57627308 ~ 57641111 (+) False tmem259
XM_036977946.1 mRNA downstream 199986 57627309 ~ 57641111 (+) True tmem259
XR_005051768.1 mRNA downstream 414599 57841922 ~ 57851518 (+) True LOC118964626
XR_002473545.2 mRNA downstream 447482 57874805 ~ 57906660 (+) True LOC110524134
TU475029 other upstream 12760 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 421932 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 454921 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 650276 56726185 ~ 56729821 (+) True G418119
TU473866 other upstream 751480 56617890 ~ 56628617 (+) True G418077
TU475377 other downstream 457057 57884380 ~ 57899648 (+) True G419452
TU476101 other downstream 985800 58413123 ~ 58416776 (+) False G420117
TU476694 other downstream 1515405 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 3266934 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 4294214 61721537 ~ 61722024 (+) True G423922

Expression Profile