RNA id: XM_036977939.1


Basic Information

Item Value
RNA id XM_036977939.1
length 3645
RNA type mRNA
GC content 0.52
exon number 5
gene id LOC110524122
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57444176 ~ 57459501 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCACTTATCCCTGTTCGGTAAGAGGGTGTGGCTTCAATAACTGACGTCATATTGGCTGAACTTTGCCTGTGCTCTAGGGTGCTCAAAAGACCGAGAGCGGGAGACACAAGACAACAAACTTGTCTTGTTTGCGGTATACTAATTAAGAGACTCTCAGTTGCTGCACCTGACGATTGCCAGGATGTGTTGACCCAGGAGGAGGGTGACCAGATAGTGTGTCAATCCCACCAGCTTCCTGCTGCAGAAATCTCACCGTCTACACAGGAAGACACCACATTCCAAGGAACCATGGAAAGCACACCCAGAAAATGGGTGCTTCAGCCCATGTCACCCAAACTGGAGCTGGCAGTAGACCTTCGCACCATGCTCAGCCCCACCACCGATGAGCCCTTTAGTCTGGACCGGAGCTGGATCTACAATCGGAATGACAACTCTTCGGCTTTCAGTTTTGACAGCATCTCCGTGACCCGCACCCAGTCCACAGTTATCGTATCCACCCAGCAGAAAGTGTCCCGGGATGTGGTGGTGCAGGCCAGGCAggtggcggtgtcagaggaagattGCGGCAACACCAGTGAAGACTGGCAACCCAGTAGCCCTAGCAGTGCAGGGAGCACGGGCTCCCAACGTGGCTTCTACTCCTTTGTGGATGATCCGGTGAGCCCCGAGGCGGAGATGAACGAAGCCTGGATGGTGTCCCCAGAGAGACAAGCCAAGTTGGCGACCCTGAAAGAGGAAAGCAGTTTCAAACTGCAGACATACGCCGGTGGGAAGAAGCCAGGGAGTCTGTTCGAGGACGACGAGGACTCCCGCTACCAGGTGAACACCAACGGTGCCCAATTCAAGgtcgaggaggaggagaagcagctTAGGCAGGAGATCATCCACAGTCAAGCCCCCAAAAAGATTGCCACATTCAGGGAGCAGTGGAGTGCACTTGAAACCCTGGATCTCAGCAAATCACCCAACAAATTGCTTGAAGGGTTCAGCTTGTGCTACGAGCCAAGCAGCACCAAATCTGAGTCCACACCAGCAGCTGAGCCATGCACCATCGACAACGAACAGATCAACTTCAGCGCAGCACGGGAGCAGTTCCTAAAGATGGAACAGTCGAGGCTCAACCCATTCCTGCAGAGTCCCAGCTCTCTAAAACCACAAAGACTGTGGCAGTCAGAAGACAGCTTGCTGTCACCAAGGAGTGAGAAAAAAGACTACCACTCTGCGGAATGGTTTAACCAAAGTCTGACCCCAGTGAAACGTCAGGACAAAGGGGAAAATGTCGCTGGCAGAAAGGTGTACCGCACAGAGGAGAGGGTAACCAAGAGGCAGAGTAGCCTGTTTGATGACCTTGACTCTGGTCTGGAGGATCTATCGGGTGACACCAGTGTTGGCTACACAAGTGACGGAAGCATGTCCAATGACAACCCTCAGCCAGAAAGCAAGGGCACCCAATCGGCAAGTGGTTACAGAGAGACGCCCATAGAGAGGGAGATTCGTATCGctcaggagagagaagagagtcttCGGCGATTGCGGGGCATCAAGCACACCGACGTCCAAGAGATGGTGGAGGTCAAGTCTCTGCTCTCCCAGCCTACACCGCCACTGATGCCTGTCAAGGCAAATAAGAAGAACCGGGTGAGCTTCTTCATCCAGCGTGAGATCAAAAAGGACAGCCAGAGGGAAGAAGACTTGCTGCACCAGGGGAGAGTCCCAGGTCTGTATAACCGGGGAACTCCTCAGGAAATGGAGGATCGGAGAAAGATCTTTGAGCTTAAAGACCAATCTGGAGCCGAGGTCGAGACGATGAAAAGGACTTGGTCATCACCCAGGGTCATTGTGAGGAGTAGCAGCTCAGATACGGAAGGCTACCCTTCCCCTTGCTGCCCTCACCGGCACTCCGAAGAGACCGAGTTGTACATCGGCAGCATGAGCGCCACTCCAAGCGTCAATACCACCAGCGAAGGCTGGAGTTCAGAGTCCCAAGACTTCAATAGAGTACTGCCAAGCAGCTTCCCAGAGGAGAGCGTCATGTTGAAAGGGAATGAGACCAGTAAGGCAGAAAGCGCTCAAGTCACAGTGGTGGTGAAGACCAGTACTAGTGAAATAGTAAATTACCCATCATGGTTAGTGGAAAGAAAGAAGCCAGTTCCAGCCAGAGGCTCCTCGGCTAAAGAAGCCTCCTCTttgtcatcctcttcctcctcacctACACCCACTGCATTTGCAGTGCAGGTGTCTGAACCGAGTGATAAGCCTGTTCCAACCTGGCGGGCGCACCTGGATTCTGGCGGCCTGCGACATCGAAGACCAAACGCTCCAGATATTATCCAGAAGGAGATTGAGCAGGATCTGAAACGTGAGCAGGAGCTCCGGAAACTGCGGGAATCCCGTGGCCTGTCCGCCTCTATGGAAGGAAGCTTGGACTGTATAGAACGAGACGCTAAAGACGCATGTCAATCACAAAGCCTGCGAAGAGTCATTGTGGAACAGGAAGAGTCTGTCTTCTCTGAGAGCCCTTCACTTCCAGTAGAGCATACGAGCTTGGCCAGATGGTCCtactcatctatcactccagtatcaaTGCTAGTGGACAGCGCATCTCGCTTTTCCACCGCCATTCGTCCCACTGCCCGTCTTCCCTCCTTTTCCATAGTCACTGCCCAGCCATGGGGCTCCCCAAGGCCCAGCTCCCCTGTGGTGAGCAGGGTTGCCCCCCTGTTGCCTGCTAGCCCGTGGGTAGAGATGGGTGGCTCCCCTGGGATCCCCACGCAAAAAGGCCTGACCGAAACACTGCTAGAGGACTTTGAGGAGAGGAGAATTAAACTGAAGCTGGAAGAGAATGCTTATGCAGGAATTCAGCCTACTGACGATGTGAACAATGAAGTCTTGGAGGCGACCCGCGTCACCAGGCACAAAAACAAGCGGGCACTGCGCTGGGAGGCTGGCGACTACACCAAGGAGGACAGCCAATGAGTCCACCAGCCTTCTCCACTGGAGGGTGAGCGAACatggaaaggagaagaggagatggaacAACAGGCAGTTTAGGGAAGTTGTCCCATCTCAGCACATAAGAATATACTCCGTCTACACACTACCTGGCTGAACTAATGATTGGTCAACTTTgtgataacccccccccccccgtccatcATCTGCCACCTGAGCATTGCCCTGACTAGGGCAGGTACCTTTTCACGATTTTAGAAGCGAAAGGTGAACTGAAAAATATATGTAATAGATGAGACAGGTTTTTAGCTGAGGCAGGGAATGGAATGGAAGTGGAATTTAAGGAGTTCTGTGCCTGCTTAGAATGCATTGCCTTGTTTTGGGATGAAACGGTGTATGAGTTATTTTTAAGTCTGGCAGTCACTGCTAGGTAGCTTTGATTAGGCCCATCCGCCCTCAAAAGGCTGCATAGAAAATGAGTGAGGGAGCTATTTTTGTCTTGTCAGTTGTGCTTTGCAAAGCAAAAACAAGCAAGAAACCATCAGATATCCATTATGTATTTAATAAAGTAAACATTTCCAAACCAATATCCAGTCCAATGAAGCACTTGCAGTAGTCTTCAGGAAATGTTGACTTTTGTCTAATTTAATATGAAATAATATCTAATAAAGAGTTAGCTACAGCTGATACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475454 lncRNA downstream 64817 57379051 ~ 57379359 (-) True G419526
TU475050 lncRNA downstream 75449 57368490 ~ 57368727 (-) True G419149
TU475043 lncRNA downstream 81648 57362007 ~ 57362528 (-) True G419147
TU475041 lncRNA downstream 83071 57360356 ~ 57361105 (-) True G419145
TU475040 lncRNA downstream 83998 57359854 ~ 57360178 (-) True G419144
TU475614 lncRNA upstream 180668 57638288 ~ 57641101 (-) True G419673
TU475617 lncRNA upstream 183623 57641243 ~ 57641636 (-) False grin3bb
TU475618 lncRNA upstream 184867 57642487 ~ 57642929 (-) False grin3bb
TU475629 lncRNA upstream 203705 57661325 ~ 57661537 (-) True G419687
TU475630 lncRNA upstream 206138 57663758 ~ 57672663 (-) True grin3bb
XM_021603472.2 mRNA downstream 93176 57348970 ~ 57351000 (-) True LOC110524120
XM_021603466.2 mRNA downstream 329311 57078575 ~ 57114865 (-) True apc2
XM_021603459.2 mRNA downstream 428236 57011622 ~ 57015940 (-) True LOC110524110
XM_036977928.1 mRNA downstream 432775 57007649 ~ 57011401 (-) True LOC110524111
XM_021603455.2 mRNA downstream 442152 56985006 ~ 57002024 (-) False LOC110524108
XM_036977940.1 mRNA upstream 2544 57460164 ~ 57537912 (-) False LOC110524123
XM_036977941.1 mRNA upstream 2544 57460164 ~ 57537912 (-) False LOC110524123
XM_036977942.1 mRNA upstream 2544 57460164 ~ 57537912 (-) True LOC110524123
XM_021603481.2 mRNA upstream 129265 57586885 ~ 57605528 (-) False plppr3b
XM_021603482.2 mRNA upstream 129265 57586885 ~ 57605528 (-) True plppr3b
TU474707 other downstream 609581 56834026 ~ 56834595 (-) True G418830
TU474560 other downstream 732792 56710280 ~ 56711384 (-) True LOC110522975
TU474559 other downstream 734336 56708798 ~ 56709840 (-) False LOC110522975
TU473281 other downstream 1834446 55608835 ~ 55609730 (-) True G417527
TU472396 other downstream 2283909 55141315 ~ 55160267 (-) True LOC110524071
TU475541 other upstream 153439 57611059 ~ 57611567 (-) True G419603
TU475533 other upstream 162434 57620054 ~ 57626174 (-) True LOC110524128
TU475656 other upstream 242125 57699745 ~ 57705936 (-) True G419714
TU476193 other upstream 654767 58112387 ~ 58114060 (-) True G420193
TU476443 other upstream 955508 58413128 ~ 58414143 (-) True G420421

Expression Profile