RNA id: XM_036977947.1


Basic Information

Item Value
RNA id XM_036977947.1
length 5534
RNA type mRNA
GC content 0.48
exon number 11
gene id tmem259
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57627305 ~ 57641111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAACTCTTGACTTGCCTTGTTTGTTTTCAAGGCTTAATGGTTGATGCTAAGGAATAGTTAAACTGGTTGAGAGTATTGCAAACggtagaataaaaaaaaaatcggGAATCATACTCAATGTCCATCTAAAAAGTCAAACTGAGAGACATTTTCGAGGCGAACTCTCGACTAAAAAGTAACATACGGGTTATCATCGTAGAACTTGAACGTTAGATAGCCACTATAGCGTGAGCAGGGTAGTGCTAGCTAACTTGATAagcgttttatttttattttattggacGTTTCTGGTGAATTACAATGAGACAAATGCATACAAGCTAAGTTAAAATAATATACTAAGAATATACATCACCATAATCGTCAATGTTTTCGCCTCGGAATGTTGTTCACCACCAGTGCTAACTAGCATGTTAGCAATGGTATGTTGCAGGTAGTTAATTAGCCTGGGTTTGAATGGTGACTGACGCTTAGTTATAAGGCCCTAAAACGGCCAGTAGAAATTTGTAAAGAATATTTTAACATTACTGTATACGCCATTTTTTTAGGTTGCTACAGTGGTTGAGTTGTATTGGAActcattagctaacgttagctacgcTAGTGGGGGCGCTTTGGGAGTTAAGCCAGAATGCCAGATACACAACGACCATGTCGGAAAAATTTATATAACGCACAGCCCTTCTAGACATCAAATGGGTCACCTCTAGCAATTGTGACTTTTCGATgtaaactgaccatcctacagtTGGAGTTGTTGGTGCCAGTGCGGTTAAGTTGCGTACATAGATCCACGTTTCAACTGGATTGAGATAGTGACTTGCTATCAGTCGTCTTGCCAGACATACAATGTCAGAAAACCAGGGCAACGTGAACAATAACGTCCCGCTAAATAACAATGGCGGGGCGAACAGAATGCGAAACCCTAATATCAACCAGAACCCACTCATCAATGTTCGAGACAGACTTTTCCATGCCCTATTCTTCAAGATGGCAGTTACCTATGCCAGATTGTTTCCACCATCTTTCAGAAGAATCTTCGAGTTCTTTGTCCTATTGAAGgcCCTGTTTGTGCTCTTCATCCTGGCCTACATCCACATAGCCTTCTCCCGCTCGCCCATCAACTGCCTGGAGCACGTGCGGGAGAAGTGGCCGCGTGACGGCATCCTGCGCGTGGAGATCCAGCGCAACTCGTCGCGTGCGCCCATCTTCCTGCAGTTCTACGACACGGATGGCTTCCAGGGCCTGGTCAAGGaaccagagggagagggaggaggagggctggGCCTGGCCGCGCTGCACcacgaggaggaggacgaggaggaggagatgacccTGGAAATGTTTGACAACAGCTCTGTGcagTTTGAGCTAGACATCGAGCCGCGGCTGAAGCCCTCGCTGAGCGGCATCGGCCTTGGGGGAGGGGGCCTCAACGACAGCCAGGATCTCTCCTTCAGCCAGTCGCCCACTAAAGTGTGGCCTCAGGAGGAGTACATAGTTGAGTACTCTCTGGAGTACGGCTTCCTCCGCTTGTCCCAGACCACCCGGCAACGCCTCAACATCCCCGTCATGGTTGTCACGCTGGACCCAATGAAGGACCAGTGCTTTGGGGACGGCTTCAGCCGCTTCCTCCTGGATGAGTTCCTGGGCTACGATGACATCCTGATGTCCAGCGTCAAGGCCCTGGCCGAGAACGAGGAGAATAAAGgcTTCCTCAGGAACGTGGTGTCAGGGGAACACTACCGATTTGTCAGCATGTGGATGGCCCGCACCTCCTACCTGGCTGCCTTTGTCATCATGGTAATATTCACCCTGTCGGTGTCTATGCTGCTGCGCTACTCCCACCACCAGATCTTCGTCTTCAtcgTGGATCTGCTGCAGATGTTGGAAATGAACATGACCATCGCCTTCCCAGCAGCCCCTCTGCTCACCGTCATCCTGGCTCTCGTGGGCATGGAGGCCATCATGTCGGAGTTCTTCAACGACACTACCACCGCCTTCTACATCATCCTCATCGTGTGGCTGGCCGACCAGTACGACGCCATCTGCTGCCACACCAACACCAGCAAACGTCATTGGCTGAGGTTCTTCTATCTGTATCACTTTGCGTTCTACGCCTACCACTACCGCTTCAACGGCCAGTACAGCAGCCTGGCTCTGGTCACCTCCTGGCTCTTCATACAGcACTCCATGATCTACTTCTTCCACCACTACGAGCTACCGGCCATCCTGCAGCAGATCCGCATCCAGGAGATGCTGCTGCAGAACCAGCAGGTGGGCCAGGGGGGAAACCAGACGGCCTTGCAGGACAACCTTAACAACAACACCACCGCAGCAGCTGCAGCTGGAGGAGCAGCTCCAGCCCGAGGGGGGGCAGCCAATGGCCAGGTCCAACTGCCAGACGAGCCCCAGGCGGCTTCGGCGGCCCAGGCCCAAGGTACAGCGACCCAGGCTTCCCAGTCTAACAGCATGGCCAGCAGCGCTACGTTAGAAGGGGCCCGGGAAGAGTTGACGATGACGACGGAGCTGGACTGGATGGCGGAGACGGCGGCCATCATTACGGAGGCCCTGTCCTCCTCCTTGGCTCCCCAGCTGGAGAGCACGGAAGGGGGTTTGCTGGGGGAGGCTGAAGAGGTGGGGGGGGTCATGGTTTCTGAGGCGGGCCTCAGCGTGGTGGCGGAGATTCgaatggggggtgggggtggaggaggagagggtacaGATGGCCTCAATCCCAGCTTGGTTCCAGTGGAAATCAAAACCGTAGGGGCCTGCAGCAGCAGTGCAGCTGGCTTAGGCccgcctcttcctccctctcctccaatgggaggacttcaggaagcagagacTAGTCTCTCTAGTGTCAgtcccttcctccttcctccttctcctcctccacacacagaCTGCAGTAGGGCAGGGGAGCCAGAGAGCCCTGGGCAAAGCCCCACAGACTGGGAGCCCAAGACAGAGGAACCCCCCAGCCCCACTCCGTCCTGAGCCCCCCTACTCCAACTCACGTATGCTCCCACACGCAGAGGCAACATGTCTTCTCCCCCCTCAATTCCTCTTCCAACACCGCAAGATTGCCGCCGTGGCTATATTACTGTAATCTCATTCTTACGACACCAAGGAGAAGCGAGGGATGGAAAGCTAAGAAAAGGCgcccccctccactctcctctagaATCTCTGCTACGATAATGTTTTGTTTTGCTTTTAGTTTCCCCATCCTTAGTGGGACAGTGACTTTTTCCATCCGTCGCAGAGTTTTTGCTCAAATTATGTGTGATACACCAACTTTGCTTCAAAGGTGTGGAATCGTTTGTGAAAGGCTACCATGACATTTTGCCATGTGATATTTGTGTTTATGATTGAAAGTTGATTTGTAAAATAGAGAGGCGGCAATCCTATTGCGTTGATGTACAATTCCTTAAAGGATGTTTCTTTTGGTTAGGTGTCTCGACGGGCTTTGGAAATGGCAGTGTACTCTATGCGTTTTCTTTTTGAGAGCACAGTTGACTACCATACCAGTCATAACAAGGCTGTAACACGTACTCGTATCCTAGTCATTCATTCCATCTGGTTCTCGAACCCAGAAAAAGAAAATACGAATACAACCCTGTGTTTCTGAGTTGCTCTAGTATCCGAGTTGGTCATTTTTCTTTCAGAACTGTAGGCTAGTAATGTTGCTGTGGTTTGTGTAGATACTTCACGCACCACTTTTTCACAGGCGCTCAACTCCTCCAGTTTGGAGGTTGTAGTCGTAACTGGCAACCGGCTCCACAAGCTAGCACTAGCCCTGAGTGGAGCATCATGGGAAATGGAGTTTTCATCCATTCTTTGGAGTGTTAAGCAGACCTGCTTGCTCTTGTTCAGATTTTTTCCCCCCTGTCCGCTTCTCTTATGACGATTGGCAGTTGCTCCCCGTACTTCTTGAGCTGAAGAAGAGCGGCCATCATTGCGGTTTCTCTCATCTTAACCCCTTTTGAGTGAAACTGCGTCATTGGTCCGCCCCTGGGAGCTTTTCTGTGTACTGCTAGCCAACCAATTCTCTCATCACCATGTTTTGTATTTGTCTTTCACATTAGAATCGCTTCACTAGTCATGTGCACATTAAACAGAATCAACCTGAAGGCTCAACCATTGCCTTAAACACCCGTTTCATGGTCTTCAAACAAAATGATTTAAGTCAATATTTGTTCCCATGGCCCCTTAGACTGTATTCCAAAAGAGGAGCATGTGACTGTAAAAAAGAAATGCGCTTCATCACAAGGAAGTTTTCTGGTTCATGGCGTCAGCTGACTGAGGCCCATTTCAAGCTCAAACACACAGATCTTTGCCCCAGACTGGCACAAGACAATACCAGGCGATGTTGAACAGCTTCAGGGTAAAGCCATTGTACCCAGCCGAACCCATCTCCATTACATTTGTCATTGCGATCTACCATTCAGCTGCCCAACTGGATAGTTATGAAGAAAAAGCATATATTGGACCCTAGGGGGCATTTAATTTTGTAGAAAAATATATTTAGGATTAATATTTTATCTTTCATCAATGTTCTTGTTTCAAAACCTTCAGGAGATTATGATAAAGCTGCACAATGTTAAAAACCTTCCACGGCTGTTGTGGCCACTGCTCTATTCCATAGCTCACGGGAGACTAAATAACTGGCTTGTAAAATGCTACTGTGATGCTAGTTGTATTTGCTAGGGTCTAAAGACAAACATTGTTTTCCTGTACTCAGATGGACCTGACATGCATCATGCTTCCCCTTTTCTGGAACTAGCTGAACAAGGTACTAACATGGACAGGGTATAACACAAGTCGAGAGGTTTTGACATTGTAACTCTATAGACATAAACGGTCAGGGAAGGATCAGAAGTCATTGACAGGTGTGGTCGGCGTCTTCGTCCTCAGCTGTTTGAATTGAGAACAATCTGACCAGAGAGCTTTTATTTTGAATGATACCTTATATGATTCCGAATGAGAGATTAGTGCAAGTTGAGATTGCCCTTGTTGGCCTCATATCAGAGGAAAATGGGTTGTTTCTCAACAGAATGGCGATAATCAAGGGACATTTCGCAAAATATCATTGTTCTATTGAGACACGAGGGGTTAGCGTAATTTCTGCTCAGTGAGTTGTGTGGAGATGTAGTCAAGGCTATGCAACGGGCAGGACAGAGGATGTGGTTATGGGATGAGAAGGTTGTCCAAATTGTGCAATATGACAAGTCAGTTTAAAGAAGTCTTTTGAGTTCATTCTAGGGGAAGCTTTTACCGataagagaagaaaaaaaatgttccGTCAATGAGGTTTTCTGATCAGTTTCTTTATCTGTGCCTATATTCCGTTCTGTGAGAGAAAACGGGATGATTGTAGCCTTGCAACAGTTGCTATCCATTTGTAGTTAATTTTAGACAATGATAAATGAACCCTTCGATCTGTGATGGACTAGATTCCtctcattcaaatgtatttaactGTTCAGTAAACCAAGTGCAGTAGAAGCATTCTTTGCACAAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475192 lncRNA upstream 15552 57610783 ~ 57611756 (+) False G419278
TU475193 lncRNA upstream 15675 57610783 ~ 57611633 (+) True G419278
TU475191 lncRNA upstream 15724 57610783 ~ 57611584 (+) False G419278
TU475189 lncRNA upstream 18080 57605581 ~ 57609228 (+) True G419276
TU475061 lncRNA upstream 247775 57379324 ~ 57379533 (+) True G419159
TU475221 lncRNA downstream 12053 57653164 ~ 57653374 (+) True G419300
TU475222 lncRNA downstream 14480 57655591 ~ 57655810 (+) True G419301
TU475228 lncRNA downstream 18980 57660091 ~ 57660303 (+) True G419307
TU475248 lncRNA downstream 46720 57687831 ~ 57688070 (+) True G419326
TU475260 lncRNA downstream 58654 57699765 ~ 57700039 (+) True G419338
XM_021603473.2 mRNA upstream 199985 57380097 ~ 57427323 (+) False LOC110524121
XM_021603474.2 mRNA upstream 199985 57380097 ~ 57427323 (+) True LOC110524121
XM_036977935.1 mRNA upstream 259681 57352344 ~ 57367627 (+) False LOC110524119
XM_036977933.1 mRNA upstream 259683 57352344 ~ 57367625 (+) False LOC110524119
XM_036977934.1 mRNA upstream 259684 57352344 ~ 57367624 (+) False LOC110524119
XR_005051768.1 mRNA downstream 200811 57841922 ~ 57851518 (+) True LOC118964626
XR_002473545.2 mRNA downstream 233694 57874805 ~ 57906660 (+) True LOC110524134
XM_036977952.1 mRNA downstream 260991 57902102 ~ 57903229 (+) True sid1
XM_036977954.1 mRNA downstream 387650 58028761 ~ 58030894 (+) True LOC110524136
LOC110522977 mRNA downstream 443610 58084721 ~ 58086269 (+) True LOC110522977
TU475029 other upstream 259971 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 669143 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 702132 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 897487 56726185 ~ 56729821 (+) True G418119
TU473866 other upstream 998691 56617890 ~ 56628617 (+) True G418077
TU475377 other downstream 243269 57884380 ~ 57899648 (+) True G419452
TU476101 other downstream 772012 58413123 ~ 58416776 (+) False G420117
TU476694 other downstream 1301617 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 3053146 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 4080426 61721537 ~ 61722024 (+) True G423922

Expression Profile