RNA id: XM_036977952.1



Basic Information


Item Value
RNA id XM_036977952.1
length 825
RNA type mRNA
GC content 0.47
exon number 2
gene id sid1
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57902102 ~ 57903229 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGCTCGTTGAcgtgcgcgagcagtgtgggtgcaataatttaataacataGATTCCTAAATtaattttgcaacgctcgcacaCGCGATCCAATGTGGAGTGGTCAGCCTGTTAAGGTAATGCTGCCTTTGCAGACTGTGACACATCTGAGGTTGAAATGACCTGATGAGTTTGTGCACAACGTGTTGGAAGGCAGTTCCTCTGTGAGACTCAGTTGGACCAACAAACACAGCCTACTTCTCTCCAGAGAAACCTCAAGCAGAGTCTACGAGGGAGTCGGATCGAAAGCTTCCTTTTCATCATCTCACAGAATAGAGTACTGCATCCGGCCATGAAAGTGACATTGAGAATCATGTTGTGCTTGTCAATCATACTGAATGGTGTACGTTTGGGAGAGTCCCTGGGTGTATCACTGAAGAGCCTATCAGTGAAAGTGGGCGAGGATGCCACACTGAACTGCCCTCTGTCCACTAACTGTAGCATGGCCACTGTGAGCTGGTACAAGCAGAGTCAAGGAGAGAGGCCTGAACTGGTACTCAGCTACCACCTGACCAACACCTCCCATGTGCTCTACGGCCATGGCTTCCATCCCAACAAGATCACTGTCCAGACCAATGATAGCAGGCCACTTCACCAGCATCAGTTACTGATCCATGGATCTAAAGAGAATGACATGGCTGTTTATTTCTGTGGACTAACAGAAGGATTTGAAAGAACAACTGATTTGTAGAGATGAATGTGAGGTGTACTATGTAAtcacactgtactgtatctacaGGCTACTCTGTATTGGTCTTCCAAAGCAACTCCTAATAAACTCAAGttga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU475384 lncRNA upstream 1723 57897396 ~ 57900379 (+) True G419459
TU475374 lncRNA upstream 17957 57865206 ~ 57884145 (+) True G419449
TU475372 lncRNA upstream 37172 57863798 ~ 57864930 (+) True G419448
TU475303 lncRNA upstream 128164 57771648 ~ 57773938 (+) True G419380
TU475279 lncRNA upstream 167572 57734199 ~ 57734530 (+) True G419357
TU475846 lncRNA downstream 82467 57985696 ~ 57985937 (+) True G419901
TU475878 lncRNA downstream 130206 58033435 ~ 58035576 (+) True G419927
TU475922 lncRNA downstream 183330 58086559 ~ 58086794 (+) True G419971
TU475932 lncRNA downstream 184437 58087666 ~ 58087897 (+) True G419980
TU475931 lncRNA downstream 186467 58089696 ~ 58089817 (+) True G419979
XR_005051768.1 mRNA upstream 50584 57841922 ~ 57851518 (+) True LOC118964626
XM_036977947.1 mRNA upstream 260991 57627308 ~ 57641111 (+) False tmem259
XM_036977946.1 mRNA upstream 260991 57627309 ~ 57641111 (+) True tmem259
XM_036977948.1 mRNA upstream 265314 57627305 ~ 57636788 (+) False tmem259
XM_021603474.2 mRNA upstream 474779 57380097 ~ 57427323 (+) True LOC110524121
XM_036977954.1 mRNA downstream 125532 58028761 ~ 58030894 (+) True LOC110524136
LOC110522977 mRNA downstream 181492 58084721 ~ 58086269 (+) True LOC110522977
XM_021603502.2 mRNA downstream 216836 58120065 ~ 58124398 (+) True LOC110524139
XM_021603503.2 mRNA downstream 255292 58158521 ~ 58160134 (+) True LOC110524140
XM_021603505.2 mRNA downstream 296158 58199387 ~ 58205370 (+) True LOC110524142
TU475377 other upstream 2454 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 534765 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 943937 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 976926 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 1172281 56726185 ~ 56729821 (+) True G418119
TU476101 other downstream 509894 58413123 ~ 58416776 (+) False G420117
TU476694 other downstream 1039499 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 2791028 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 3818308 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 4202294 62105523 ~ 62105872 (+) True G424079

Expression Profile