RNA id: XR_002473385.2


Basic Information

Item Value
RNA id XR_002473385.2
length 1606
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110522874
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58002584 ~ 58014660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGGACCTTGCACGTTGAGTGTGAAGTATTAAAGCAGTTAGGAAGTTTAAACACAAACCAGGGCCTCTGGATAATGTAGAGCAATGCTACACACTTTTGCATTGGTATCTGCACTGCACATAATATGAACAATTACCATTCCTTGGAAGCCCAATAACTTATTTGAAAGTGGATGGGTACAAGTGGATGGGTACAAGTGATTTATCATCACAAACCTGGGGCGTCCGACTGCACCCTCATGAAGGCTCAAGTCAAACCATTGTGGAGGGTGACGGAGGAATCACATCAGACATGGGTGGCTGTACACAGAGTCCTGGAGGTCAAGTGTCCTGTCGGCACAAGACAACAGCACTCTGGACGACTGGCTACAGAACAAGAGAGGGCATCTGGCAAATGCAACTTCTTTGAGGAAGAACCACTTCTCCAACACTCAGGCGCAGATGTTTGTAAAACAAGAACTGATTTCATCACGTGGACCCCCAAACAATGTATAATCGTCCGTGTCCTGTGAGCTGATGACTTCCTCACCAAGGCTCTGAACACAATGAACTGATTCTGGGCCAAGTATATCTACACCAAGATGGTTGGCACAGCCCATAGACAAGGAGACAGACTCCAGTCTACAGACAGTCCAGGGTGGAATACAGTgcagagaggaagaaggagaagcTGGTACATGAAGAAaagttaggaatacagtagttcaGTCGAAGGACTCAACCCATGTAATCGGTCTGgtgaaaaatgtatataaattAACTGTATTTAGATAGAAGTACATACACATAATACACAATAGTAAGTAATTTAAGTTAAAAAGTATACAATATAAAGTGCGTGGGTGCAAATAGCTAATGCAGTTGATGAGGAGTTGTCAGAGATATATGTCGACTGTACAAGACATTAAGAAAACGTGCCATGacatacactgaccaggtgaatgcaggtgaaagctatgctatcttattaatgtcacttgttaaatccaattaaatcagtgtagatgaagagaggagacaggttaagtgCCAAtgaagggggtatggtagtaggtgccaagtgcACCCTCggcagtttcctgtgtgtaccaagaatggtccaccacccaaagggcatcTTAGCCAACTTgtcacaactgtggaaagcattggagtcaacacatACCAATATGAATCCACCTCTTTAAGTCAGCCAAGATCTGAAAtcacaacaaaaaacaaacagccAAGATcagaaatgtttaaaaatattACCAGGACGATATACAGTCTGGGTGCCATCTCTTTGTGCTGTTTTGCAAACTCCTCTCATCAAAGAAACAATAGTTGTCGGAACAGCTTAAGAGTCCAGGCACCCAGGCATAGCCTACATAATACATACCTGACCGCCAGGATGATGATATTGTGGAGAGATAAAGTCACATCAGAAGTACGACCACCACAGCCTTTCGACAGGTACAGTATGTGATACTGCCAGCAGGAATAcaagctagaggtcgaccgattaatcggaatggccgattaattagggccgatttcaagttttcataacaatcggaaattggtaattttggacgccgatttaaaaaaatgttttgttacacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475845 lncRNA downstream 17032 57985224 ~ 57985552 (-) True G419900
TU475779 lncRNA downstream 69168 57900287 ~ 57933416 (-) True G419834
TU475760 lncRNA downstream 150647 57841853 ~ 57851937 (-) True G419815
TU475679 lncRNA downstream 276699 57725593 ~ 57725885 (-) True G419736
TU475669 lncRNA downstream 285831 57716535 ~ 57716753 (-) True G419726
TU476175 lncRNA upstream 7626 58022286 ~ 58022803 (-) True G420184
TU476196 lncRNA upstream 14311 58028971 ~ 58030854 (-) False G420194
TU476197 lncRNA upstream 14311 58028971 ~ 58029945 (-) False G420194
TU476198 lncRNA upstream 14311 58028971 ~ 58030854 (-) True G420194
TU476167 lncRNA upstream 17461 58032121 ~ 58083723 (-) True G420179
XM_021603492.2 mRNA downstream 4144 57989745 ~ 57998440 (-) True LOC110524135
XM_021603491.2 mRNA downstream 8378 57989745 ~ 57994206 (-) False LOC110524135
XM_021603489.2 mRNA downstream 120870 57876328 ~ 57881714 (-) True LOC110524132
XM_021603487.2 mRNA downstream 127720 57866562 ~ 57874864 (-) True LOC110524131
XM_021603488.2 mRNA downstream 127723 57866562 ~ 57874861 (-) False LOC110524131
XM_021603494.2 mRNA upstream 19012 58033672 ~ 58081875 (-) False homer3b
XM_021603495.2 mRNA upstream 19012 58033672 ~ 58081875 (-) False homer3b
XM_021603496.2 mRNA upstream 19012 58033672 ~ 58081875 (-) True homer3b
XM_021603498.2 mRNA upstream 77651 58092311 ~ 58109445 (-) False LOC110524138
XM_021603499.2 mRNA upstream 77651 58092311 ~ 58109445 (-) False LOC110524138
TU475656 other downstream 296648 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 376410 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 391017 57611059 ~ 57611567 (-) True G419603
TU474707 other downstream 1167989 56834026 ~ 56834595 (-) True G418830
TU474560 other downstream 1291200 56710280 ~ 56711384 (-) True LOC110522975
TU476193 other upstream 97727 58112387 ~ 58114060 (-) True G420193
TU476443 other upstream 398468 58413128 ~ 58414143 (-) True G420421
TU477090 other upstream 1011443 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 1118210 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 2086105 60100765 ~ 60101056 (-) True G422347

Expression Profile