RNA id: XM_021603498.2


Basic Information

Item Value
RNA id XM_021603498.2
length 4985
RNA type mRNA
GC content 0.53
exon number 24
gene id LOC110524138
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58090616 ~ 58109445 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTGCATTTCTGTTCTCTATGCACGTTGTGTGGCTAGGAAGTTCGTCACTGTTTGGTGTTGGAGTTCAGGCGCCTCGAGTTGTTTTCGGTTTAATTTCTGGTGCGGTTAGAATTTTGTTTATGTTCAAATCAGACTCGAAGAAGAAGCGGTGATCACAGATATCAGCATTGATAAACATATCACTGAAGATCTTGATCATATTCATCGCAGCATCGGAGTCTGTTTAGTCCGCGCAACTTGTGTCGAGATGAGTGTGGAAGCGTACGGGCCGAGTTCTCAAACGCTCACCTTCCTGGACACTGAAGAAGCGGAGCTACTTGGAGCAGATACCCAGGGCTCGGAGTACGAGTTTACCGATTTTACCCTACCTAGCCAGACACAAACTCAAGGCCACACCCAGAGTCAGCTGGACAATCAGGTGAATGGTCCTAATGAAGGGCTTCACAATGGAGGGGTTGATGATGTTGCCAAGGCGAGCCAAATTCTCTCTGAGTTGAACtttgaggaggatgaagaggacacCTATTACACTAAAGACCTCCCACTGCATGCCTGCAGTTACTGTGGCATCCATGATCCTGCGTGTGTGGTGTACTGCAACACAAGCAAGAAGTGGTTCTGCAATGGACGTGGCAATACATCTGGCAGCCACATCGTAAACCACTTGGTGAGAGCCAAATGCAAAGAGGTGACTCTGCACAAAGACGGGCCGCTGGGCGAGACGGTGCTGGAGTGCTACAACTGTGGCTGTCGCAACGTCTTCCTCCTGGGCTTCATACCCGCCAAGGCCGACTCTGTGGTGGTGCTGCTGTGCAGGCAGCCATGTGCCAGTCAGAGCAGCCTGAAAGACATAAACTGGGACAGCTCCCAGTGGCAGCCGCTGATCCAGGACCGCTGCTTCCTGTCCTGGCTGGTAAAGATCCCCTCGGAGCAGGAGCAGCTCCGGGCCCGCCAGATTACCGCCCAACAGATCAACAAGCTAGAGGAGCTCTGGAAGGACAATCCAACAGCCACTCTGGAGGATCTGGAGAAGCCCGGTGTAGACGAGGAGCCTCAACATGTGCTGCTGCGCTACGAGGATGCCTACCAGTACCAGAACATCTTCGGCCCCCTTGTCAAACTGGAGGCCGACTACGACAAAAAGCTTAAAGAGTCCCAGACCCAAGATAATATAACGGTCAGGTGGGACCTGGGGCTGAATAAAAAGCGGATTGCCTATTTCTCCTTGCCCAAGACGGATTCAGGTGACATGCGGTTGATGCAGGGAGATGAGATTTGTCTGCGCTACAAAGGAGACCTGGCCCCACTTTGGAAAGGCATCGGTCATGTCATCAAAGTCCCAGACACACCCTTTGTGAAAGACTATGGAGATGAGATTGCTATAGAATTGCGCAGCAGTGTCGGAGCACCTGTGGAAACAACCCACGACTACCAGGTGGATTTCGTGTGGAAGTCCACTTCCTTTGACAGAATGCAGAGTGCCCTGAAGACCTTTGCTGTGGACGAGACGTCCGTGTCAGGCTACATCTACCACAAACTGCTGGGCCACGAGGTGGAGGATGTCATCATCAAGTGTCAGCTGCCCAAACGCTTCACTGCCCAGGGCCTGCCCGATCTCAACCACTCTCAGGTGTATGCTGTGAAGACTGTGCTGCAAAGACCCCTCAGTCTTATCCAAGGCCCCCCCGGCACTGGGAAAACTGTCACCTCTGCCACCATAGTGTACCAGCTCGCCAGGCAGGGCAACGGACCCGTGCTGGTGTGTGCTCCCAGTAACATCGCGgtggaccagctgactgagaAGATCCACATGTCAGGTCTGAAGGTGGTCCGGCTGTGTGCTAAGAGCAGAGAGGCCATCGACTCCCCCGTCTCATTCCTGGCGCTGCACAACCAGATCCGCAACATGGACAGTATGCCAGAGCTGCAGAAGCTGCAGCAGCTGAAGGATGAGACCGGGGAGCTGTCGTCTGCTGACGAGAAGCGTTACCGGGCCCTGAAGCGCACCGCTGAGCGAGAGCTGCTCACGAATGCGGATGTGATCTGCTGTACCTGTGTGGGGGCAGGAGATCCACGCCTGGCCAAGATGCAGTTCCGCTCCATCTTGATTGATGAGAGCACCCAGGCCACCGAGCCAGAGTGCATGGTGCCTGTGGTCCTGGGTGCCAAGCAGCTCATTCTGGTGGGAGACCACTGCCAGCTGGGCCCAGTAGTGATGTGTAAGAAGGCAGCCAAAGCAGGCCTGTCCCAGTCTCTGTTTGAGCGTCTGGTGGTGCTGGGCATCAGGCCCATTCGTCTGCAGGTGCAGTACCGTATGCACCCGGCCCTCAGCTCTTTCCCCTCCAACATCTTCTACGAGGGCTCCCTGCAGAACGGAGTCACCGCTGCTGACCGCATCAAGAAAGGCTTTGACTTCCAGTGGCCGCAGCCAGACAAGCCCATGTTCTTCTATGTAACTCAAGGCCAGGAGGAAATAGCCAGCTCTGGAACGTCCTACCTGAACAGAACTGAGGCGGCCAACGTGGAGAAGATCACAACCAGGCTGCTGAAGGCTGGGGCCAAGCCTGACCAGATAGGCATCATCACCCCCTACGAGGGCCAGAGGTCCTACCTGGTGCAGTACATGCAGTTCAGTGGTTCCCTCCATACAAAACTCTACCAGGAGGTTGAGATCGCCAGCGTGGACGCGTTCCAGGGCAGGGAGAAGGACTTTATCATCCTGTCGTGCGTACGAGCCAACGAGCACCAGGGCATCGGCTTCCTCAATGACCCGCGCCGTCTCAACGTGGCCCTCACCAGAGCCAAGTATGGGGTGATCATTGTGGGCAACCCAAAGGCCCTGTCCAAGCAGCCTCTGTGGAACCACCTTCTCAACTACTACAAGGAGCAGAAGGTTCTGGTGGAGGGACCCCTCAACAACCTGAGAGAGAGCCTGATGCAGTTCAGCAGGCCCCGCAAGCTGGTCAATGCCATCAACCCTGGAGCCCGGTTCATGAGCACTGCCATGTATGATGCCCGTGAGGCCCTCATCCCTGGGTCTGCCTACGATCGCAGCAGCGCAGGGCGTCCATCCAACATGTATTTCCAAACCCACGATCAGATCGGCATGATTGGGACTGGGCCAGCCCACATGGCGGCCATGAACATGCCTATTCCCTTCAACTTGGTGGTGCCCCCCATGCCTCCGCCAGGCTACCTGGCCCAGGCCAACGGCCCTGCTGCAGGTTGTGGTGGGGTGCTGAAGGGCAAAGCAGGGCGTGGCGGGCGCCAGAGGACCCGCGGCATGGGGAACCACGGTAGCAGCGGGCAGGCCAACGGGCACAACAGCCAGGCTAGCCAGGATGTATCTTCCCAGCCCTTCTCCCAGGGGCCACTCACCCAGGGCTACATCACCATGAGTCAGCCCTCCCAGATGAGCCAGCCTGGCCTCTCCCAGCCTGAACTTTCCCAGGACAGTTATTTAGGTGACGAGTTCAAGTCCCAGATCGACGTGGCTCTGTCGCAGGATTCGACTTACCAGGGTGAACGTGCATATCAACATGGTGGAGTGACTGGACTGTCACAGTACTAGAGTGTTGTTGGAAGAGGAGCTAGGCTTGAGCTGAGCTTAGTTCATCAGCATTTTAATCTGGgtaataataaaaacaaaaaatggaTACCTGTTTTCCTCTACAACTGAAGCACCACCGTGTGAAATCAACGGGAGAGAGAAACCAACCAATCGCGAGATAGAAAGTGGTAGAAAAAACGGACGGCCAGGAAGAGAGAACGTGTGGGGGTGAGGGACCACTGCCGGCACATGGGAACGAAAGCGAGAGGAAGACGGTGGCCAGTGGTCGAGCTGTCGTGAGGAAGACGAAACGAGGAacaactccctccctccacaaCCCTTTTCCCACCTCCCATTCTAACCTCACACCTCTGTCTGAGAGAATGACCAGTTATCCAGAGGACCTTGCTCTTTGATCAGctaacagagaaagaaagacaagtTCTCAAGCAACTTGTTTGGGGGAGCACTTTCCACTAACTCTCGAAAGCGGATAACAAGAAAGTAGAGGGGGGAGGGTGTGGAACACTTCAAGCAGGCAACATAGGAAATCGTCACCTCAATGTTGATCACTTGCGGTGTTGATCTCAACTCTCAGACCTGAATTCTCATCAAATGACCGCAAGAGGAACCGTCTCCAAGAGGAACCGTCTCCAAGAGGAACAGTCTCCAAGAGGAACAGTGGCAGTTCACATCGTCGTTCAACTTTGAGTTGAAAAGTTTTCTCCGCTAAAGTCTGATAATAAAGAACTTTGAATTGAAATGCCTTTGATGGCCTTCGGAACCATTTGGCTTTTTCAACAGGTCTTTTCAGAAACAGGTGGTTAACTAGAAGTCTGGTGGAGTTGAGTGGCATGGGGATATCAGAGGAAGGTTTCTGAAGTGGTGAGCTCTGGATCCAAGAGATCTTTAATCATGAGACTATTTGTTTTTGAAGTACCTTATTGCAGAGCGCAAAAGGCAAAAAAGATTTAATAGAAAAATGACCAGCATTGAAGAATATTGACTCAATATTATTTGAAGTTGTAGCAAAGGCTTTTTTGATAttttgaaagggggggggggattacatGAGATGTCACCCGCTGTGATGTTCACCGGATAATATTctatgttttaaatgtttttatgcTTCGATTGGCAGCGGCTTTGAATGAATGCTTTACTTGGGGGAATTCCTTGTGGATGTAAGATCCATCTGCATGAACACTGAGCTATTAATGGAAACTGATTTCCACTATAGTCTACACACTTTTGTGTTACTATTGAAGTTGCAGGTGGCTAGGTGTGAAATACGCTACATGgacgaaagtatgtggacacatcttcaaatgagtggattcagatATTTCAgatacacccgttgctgacaggtgtatacagtcgcacacagccatgaaatctccatagacaaacattggcagtagaatggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476192 lncRNA downstream 1837 58089742 ~ 58090474 (-) False G420192
TU476191 lncRNA downstream 1837 58089994 ~ 58090474 (-) True G420192
TU476240 lncRNA downstream 5047 58086943 ~ 58087264 (-) True G420233
TU476167 lncRNA downstream 8588 58032121 ~ 58083723 (-) True G420179
TU476196 lncRNA downstream 61457 58028971 ~ 58030854 (-) False G420194
TU476243 lncRNA upstream 212 58109657 ~ 58110712 (-) False G420236
TU476247 lncRNA upstream 212 58109657 ~ 58111292 (-) False G420236
TU476250 lncRNA upstream 270 58109715 ~ 58111292 (-) False G420236
TU476245 lncRNA upstream 1337 58110782 ~ 58111292 (-) False G420236
TU476249 lncRNA upstream 1337 58110782 ~ 58111574 (-) True G420236
XM_021603494.2 mRNA downstream 10436 58033672 ~ 58081875 (-) False homer3b
XM_021603495.2 mRNA downstream 10436 58033672 ~ 58081875 (-) False homer3b
XM_021603496.2 mRNA downstream 10436 58033672 ~ 58081875 (-) True homer3b
XR_002473385.2 mRNA downstream 77651 58002584 ~ 58014660 (-) True LOC110522874
XM_021603492.2 mRNA downstream 93871 57989745 ~ 57998440 (-) True LOC110524135
XM_036976510.1 mRNA upstream 6353 58115798 ~ 58120039 (-) False pgpi
NM_001160660.1 mRNA upstream 6372 58115817 ~ 58120033 (-) True pgpi
XM_021603504.2 mRNA upstream 54473 58163918 ~ 58187049 (-) True LOC110524141
LOC118964716 mRNA upstream 268113 58377558 ~ 58380045 (-) True LOC118964716
XM_021603517.2 mRNA upstream 270335 58379780 ~ 58394796 (-) False LOC110524144
TU475656 other downstream 386375 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 466137 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 480744 57611059 ~ 57611567 (-) True G419603
TU474707 other downstream 1257716 56834026 ~ 56834595 (-) True G418830
TU474560 other downstream 1380927 56710280 ~ 56711384 (-) True LOC110522975
TU476193 other upstream 2942 58112387 ~ 58114060 (-) True G420193
TU476443 other upstream 303683 58413128 ~ 58414143 (-) True G420421
TU477090 other upstream 916658 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 1023425 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1991320 60100765 ~ 60101056 (-) True G422347

Expression Profile