RNA id: XM_036976510.1


Basic Information

Item Value
RNA id XM_036976510.1
length 1299
RNA type mRNA
GC content 0.45
exon number 5
gene id pgpi
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58115798 ~ 58120039 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAACAGATGACTGATCAACTGTGAAAGGACAGCAAAATCCCAGCTGCATTCTTGGGTTTGAGCCATTTGGAGAGCACACTATTAATGCCAGTTGGGTAGCAGTCCAGGAACTGAAGAAGCTGGGCCTGGGAAAGGACATAGACCTGCATGTGTATGAGGTGCCTGTCGACTACCAGGCAGTCCAGAGTTTGATTCCATCACTATGGAAGCAGTATCATCCCCAGTTAGTGGTCCATGTTGGAGTCTCAGGTATGGCCACCACCGTTACCTTAGAGAAATGTGGCCGTAACCATGGCTACAAGGGTCTGGACAACAGCCGCTTCTGTCCCCATTCTCAGTGTTGCATTGAGGGGGGCCCAGACTGCATTGACTCGGTTATTGACATGGAATCGGTCTGCAAAAGAGTGACAGCCTCTGGACTAGGAGTAGCAGTCTCCGTATCAAAAGATGCTGGCAGATACCTCTGTGACTTCACCTACTACACCTCTCTGTACCTGAGCCATGGGCACTCCGCATTCATCCACGTGCCTCCCATAGAGAAGCCTTATAGTGGAGTGGACTTGGGTAGGGCCCTCCAAGCCATCATACAAGAGATGTTGGACATGCTCGACCAAACCGAAGAGAAGATCCACTGCCAGTGTGTGCACTAATTTACCTGTGAAAGCCAACTGCCTTTAACCCCTTACACACAAGAGAGATTATGCACTTAACCACAACTAGCCAAACAATGTTTTTGTTTCATTACCTCTTCTGGTGCAAATTCAAAGATGGCAACCATACAGACACTTCCAGTTGACTTATTTCACCGCCATTTTGTCACATTCTTCATTGCTGTTTCCTCAAGCTCTTGACCTGGcccatttttttttatcttaatGGTTATGATGAGGTGAGTAAAGCTGGTTCGGTGTTTTGGTGTAACGAGCTTTCCCCACATTCTGTGGACACAGAAGAGATTGAGCAAGACGATTTGAACTGGAATAACAGGAATTGACAGAAGTGAGCCACATGCTTGTTCTAAGAGCGCTACTCTTTTTGAATCTGTTGTTGAGAAGCTTCCATGGTTTTGACTCTTTATCCATACTTACACTGCTATCTCAGAAACAGGGTTAGTGTATGGAATAGCCCTTTTTTGCATCAACTCAATGTACaagttccacattatttattgttatctatctagttattTAAGGGGAATTTCTGTCTTTGGTTGTTATTCATCATATCTTGAAGGAGTTATTTTTGTAACCAGCTTTTTCATTAAAGTCTTAGGCGTCCACTTGTTGGTGCTACTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476249 lncRNA downstream 4224 58110782 ~ 58111574 (-) True G420236
TU476247 lncRNA downstream 4506 58109657 ~ 58111292 (-) False G420236
TU476250 lncRNA downstream 4506 58109715 ~ 58111292 (-) False G420236
TU476245 lncRNA downstream 4506 58110782 ~ 58111292 (-) False G420236
TU476243 lncRNA downstream 5086 58109657 ~ 58110712 (-) False G420236
TU476257 lncRNA upstream 15317 58135356 ~ 58135856 (-) True G420243
TU476262 lncRNA upstream 24449 58144488 ~ 58145156 (-) True G420248
TU476268 lncRNA upstream 34541 58154580 ~ 58154803 (-) True G420254
TU476328 lncRNA upstream 131599 58251638 ~ 58251915 (-) True G420313
TU476329 lncRNA upstream 133163 58253202 ~ 58253429 (-) True G420314
XM_021603498.2 mRNA downstream 6353 58092311 ~ 58109445 (-) False LOC110524138
XM_021603499.2 mRNA downstream 6353 58092311 ~ 58109445 (-) False LOC110524138
XM_021603500.2 mRNA downstream 6353 58092311 ~ 58109445 (-) False LOC110524138
XM_021603501.2 mRNA downstream 6353 58092311 ~ 58109445 (-) False LOC110524138
XM_021603494.2 mRNA downstream 33923 58033672 ~ 58081875 (-) False homer3b
XM_021603504.2 mRNA upstream 43879 58163918 ~ 58187049 (-) True LOC110524141
LOC118964716 mRNA upstream 257519 58377558 ~ 58380045 (-) True LOC118964716
XM_021603517.2 mRNA upstream 259741 58379780 ~ 58394796 (-) False LOC110524144
XM_036977959.1 mRNA upstream 259741 58379780 ~ 58409320 (-) False LOC110524144
XM_021603522.2 mRNA upstream 296833 58416872 ~ 58454099 (-) False mast3b
TU476193 other downstream 1738 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 409862 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 489624 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 504231 57611059 ~ 57611567 (-) True G419603
TU474707 other downstream 1281203 56834026 ~ 56834595 (-) True G418830
TU476443 other upstream 293089 58413128 ~ 58414143 (-) True G420421
TU477090 other upstream 906064 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 1012831 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1980726 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2938955 61058994 ~ 61071143 (-) True LOC110524239

Expression Profile