RNA id: XM_036977958.1


Basic Information

Item Value
RNA id XM_036977958.1
length 5733
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110524143
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58312332 ~ 58370090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTCATTCACACGGAGAGCTTGACAGATAAATACTTGTCTTTTGCCTGATGAGCTTTTAATGAACTTCCATTTTCCTCCAAGAATGGCTGAATATCTCTCGCCGATCCAGTTTGTTCTTGATTTTAATGCACCTTGTTTGGACTGTGAGGTAGCAACAGTGTGATTTTTCCCTTTCCATTGGGAAAGAGCATGTTGATCCCATTCTAAGAGGACAGTAATGAAACacgggagagaaagaagagggtcATACCACAGAGGTCAAGCCAGGGCTGGTCTCCTCTGACGGAGAGATTTGAGAGGACTAGCACTAGCTAATTGCTAACAGATACCCAGCACACAAGCAGAGTCCTACCAGCTAAAGTTCCATACTGTAATACCCACCTGTAGAGATAGGGGAAAGGGCTCATGCTGGAATACCACTTTTTTCACTTTTTATGCCTTCTTGACTCCTCGCCTAGGTCATGGGATTGAGCAGAGCTGATGGTATCATAGTAAGTAGTCATGAGTTGCAGGTTGGCAATGTCCCAATGAGTAATGTTTGTGTCATAGCAAATGAAAGCAGATGGTAATACAGATGGGTGGTGGTTTGGGTGAGTTACTGCCATAGAAGAGCACTTCAAAACCAAGAGAAAAGCACTTCAGGTAAATGCAAGTCTTTTAAAGAGCTTGGACTTCAATTTTCAGAGAAGTTTCTTTCAACTGTCAACATTTGAGGGGGGTTATTTCCTCTCCAAAAGCACAAGAGTCCACGAGAGGCAGGGGTGAAAGTGAGTCCACGAGAGGCAGGGGTGAAAGTGAGTCCACGAGAGGCAGGGGTGAAAGTGAGTCCACGAGAGGCAAGGGTGAAAGTGAGTCCACGAGAGGCAGGGGTGAAAGTGAGTCCACGAGAGGCAGGGGTGAAAGTGAGTCCACGAGTGGCAGGGGTGAAAGTGAGTCCACGAGTGGCAGGGGTGAAAGTGAGGCCACGAGAGGCAGGGGTTAAAGTGAGGCCACGAGAAGTAGGTTCCACACTAGATGTGAGTGGATTGAGCTGTGTAGCCATTGGGTTGTAGCACTCTCTTGACAGGCCTGAGCAGGGCCCACCACAGTAGCTTATCTACCGCTCCCAGTCGTCTGTCACAAGCGCCTCTGACGTCACGGCCCCGGCCAGAGTATATGGGTATACGGACGGTGGCATTCTGGAGCCGTTGTGGTGCTCATCTGATACATGGCTGCTTGTGTGTTACCACAGGACCACTGCTGGATAGGATAGGATCCTCCAGTTCCCCCTGGATTTTGATGTGGAGAATGGGCTGCCGGTGGGACGCAGCCCTCTGGACCCCCAGGCCAGCCCCAGCTCCGGCCTGGTCCTGCAGGCCAACTACCCCCACAGCCAGCGCCGCGAGTCCTTCCTCTACCGCTCCGACTCCGACTTCGACCTCTCACCAAAAGCCATGTCCCGCAACTCCTCCATGGCCAGTGAGCTGGAAGAGGGCTTGAAGCACTGGGAAGTCGGTTGGCTGCCGCGACATGGAGAAGACATGATTGTGACACCATTTGCACAGGTGCTCGCCAGTCTCCGAACAGTCAGAAGCAACTTTGCCGTCATAACTCATCTGCAGGATCGGCCCAACAGGCGGCCGTCAGGCAGCAACACTCCCTCAATGCCTACTCATACCAATCCAAGCATACCAGAGGAGCCCTACCAGAAGCTGGCCATAGAGACACTGGAGGAGCTGGACTGGTGTCTGGACCAGCTGGAGACCCTGCAGACCCGTCACTCAGTCAGCGAGATGGCTTCCAACAAGTTCAAAAGGATGCTGAACAGAGAGCTCACCCAGTTGTCAGAAACCAGCCGGTCAGGAAACCAAGTCTCAGAGTTTATCGCCAACACTTTCCTAGaaAAGCAGCAAGATGTGGAGATTATGTCTGGGCCTCTTAAAGACAAGGACAAGAAGAAGAGGCCCATGTCCCAGATTGTTGCGGTGAAGAAACCTGCCCTCAGCCCCAGCCTTGCCCCTACCCAGATCCCCCGATTTGGGGTCACCACGCTCCAGGAGGGTCTACTGGCAACGGAATTTGAAGACATCAACAGATGGGGTCTAGATATTTTCAAGATAGCTGAATACTCGGGGAATCGGCCTTTGACCGTGGTGATGTACTCCATTTTCCAGGAACGAGAGCTGCTGAAGAACTTTAAGATCCCAGCCGACACCTTCGTCACCTTCATGATGACCCTGGAGGACCACTACCACACCGACGTGGCCTACCACAACAACATCCATGCTGCCGACGTGGTACAGTCCactcacatcctcctctccacccctgccCTGGAGGCTGTCTTCACTGACCTGGAGATCATGGCTGCTCTGTTTAGCAGTGCCATACATGACGTGGATCACCCCGGAGTGTCCAACCAGTTCCTCATCAACACAAACTCTGAGCTTGCTCTGATGTACAACGACGCCTCTGTCCTGGAGAACCACCACCTGGCCGTGGGCTTCAAGCTGCTGCAGGAGGACAACTGTGACATCTTCCAGAGCCTCAGCAAGAAACAGGGACAGTCCCTCAGGAAGATGGTCATCGACATGGTGTTGGCCACTGACATGTCCAAGCACATGAACTTCCTGGCTGACCTGAAGACCATGGTGGAGACCAAGAAGGTGACCAGTCTGGGAGTGCTGCTGCTGGACAACTACTCAGACCGCATCCAGGTCCTGCAGAACATGGTTCACTGTGCTGACCTGAGTAACCCCACCAAGCCACTGGACGTCTACCGCCAGTGGACGGACCGCATCATGATGGAGTTCTTCAcccagggggacagggagagggacaaggGCATGGAGATCAGCCCTATGTGTGACAAACACAATGCCTCTGTCGAGAAGAcccagGTGGGATTCATAGACTACATTGTCCACCCTCTGTGGGAGACGTGGGCTGACCTGGTCCACCCTGACGCCCAGGACATTCTGGACACGCTAGAGGACAACCGGGAGTGGTACCAGAGTATGATCCAGCGCAGCCCCTCACCCACCCTCGAGGACAGGGACCTTGACGGGGGGCCAGGGGCCCTGGAGGCCATGGCGGGGGGCTGCTGCACCTCCACAGGGGACAAGTTCCAGTTTGAACTtaccctggaggaggaggaggagggcgacGTCGAGTCAGACCTGGAGAGCCCACCCGAGGAGGAGATGTCACTGGGGGGAGAGACTTCTAGGAAGACCCCGGCCCTGTCTCAATCCCCAGAGCCCAGCAGCAGCACCAGACACCGgcccccctcccctcaccctgGCCGGGCCCTCAGTCTGACCACCATGTCAGTTAGGAGCCCCGGCCATCTCAGGACGTTGAGCCCCGGGCTGGACGGGGACGACAGAGACGATATGGACAGAGAACTGGGTCAGGAAGGCAATAGTGTAGCGTACCTACGGCTTGGCACGTAACACCAACCCTAGCCCACCCAGCACCTCATTCAGTCCCTGCCTTGGTTCGTGGGTCCCAGCAGCAATTGGACGTGCAGGGTGGGTTTTTTGACAACAGTCTGTAATGACAACAGTCCCTTTACACTGAAGACACCTTTACACTGACCACTTTCCCTCCGTTTAATCTTGTAGAACAAGAAGTATCGTTATATCCTCTTTTTTTCTCCTTTGTGCCAGATGGGACTTTTTAGTCCTGTTTTCTGTAATTGATTCTAGGGGTAAAGTGTCAGAAACAGACTGCTGTATATGTCTAGCTGATCAAAGGTAGAACTAATTACATGGCTAACCAGTCTCACCAACGTCTCCTGATGGAGCAAGGAATTCTACTGAGAAAATGTCTTCCTCAAAATGATGGAATATAGATTTATTCAATGGAATATTGTAAGGATTGTGATCAATTTACAGGGTCTTAGAACTGTTGCACCATACAATTAGGGGGATTATATTTGTTTGAATGCAGTAAGCATAAACTAGTATATTTCATTTAGTTTCTGAGAGTTCTGTGAATGATAAGTTTAACCAAATCCAGTATCTACCTGAATAGTGAGATAATTGTGACTTAAACCTCAGGGTATGGAGAGAGAAATGATTTTAATGTAGCACAGACTTCTTGGGTGCCCCTTAAGATAGACTGCCTGTTTCGAGTTTTGTCGCTGACGACAAACGTTTTTTTAGAACTTCAAGAGGTTCAAGTTACGCAAAAATACATAACTGATTGACATGTGTCTGGCGCCCTCTATTGATCTAAATGAAGAGTTTGAGTTTGAGAACTAAAGCAAGTTAATAAGTATGGAGTAAGAAACAAACAGTACCAGTATAATTATATACAATGGagtctgaaattattgacacccttgatacagaatcatttataggaaatctttaggggtgtcaataattCTGACCCCTACCTTTTAGGGGGGGGAAAGTCATTTTTTAGCACAAAATATAGATcagtatttttattatttattttatacagtcagtATTGCTattctttatcaagggtgtcaataatttcagaccccactgtatacAAGTCAAGCATTTAAACATTTCCTGAAGTACTGTGGTTGATTGGGTTGTTTTAAATCTAGACAAACACCACCACTACACTCATATTcgtaaaattgtatttgtttttatggGGTCATGTTTTACGTTTGTCACATTTTTAAATATGATATGAAATGGTTGTTTTCTTTTATATATTTGGGATGTCTTCACtatgtctgtttgtctctgtgctTTGTAAGCATAGTTATCAGGGTGCCTCCACCATCCAGTAACACTTTACAATCTCTGTTGTAAATTCATTCAGTTCTGAAGCGCTTGAGCCAAACCATGATTCTATTAGACAGCTTACTGAAGGTTGTGTAGATCTGAGAGGAATGGATAGGTGTAATAAATGTGGTAATAATTCCACCTAACCTATCCGAGTGGTTAAATTGTGGTTAAATTGTCATGTACTGTAGCTTAAACCTATGAAATCCtgtcagatctccacaagtgtctaggggttaggggctatgggttgtttctggacagggccgCAGAGTAGACTAATAGGGGTTTTTGTCCAGTAGGGTGCGATGCTTTGaaagttgcagatagaaatgtagtGAACAGAGATGATATGATTCCCTGTAAAACACAACAGAAAATAATTTCCGTATTGACATTTGATAACTTCCCATTTGCCTGAATAAGCCCCTAATGTCTTGTTTAATTTGTTCTTGAGGGGAAACAAGTTTATAGGGAAAATTGTGTGTTTAGAATTTGAACCAAAGCATCTGCCAGCCTAAGTCATTATGAAATGTTTAACACAATGTTCTCTCTGAACTGTTGATTGTATTCATGTTATTTGATCAATTGTTAGAATTATGCTAATTTTTTTCATGGGAAATGTCGCACCTTAATACGTTGGATGTAATGCTTCGACTTAAATGCCTCATTCAATTTTGTCAAGTTGATTAATGTTCTGCTCTTCACAGGGATACAGCTTTTATCTACAGTATGCGAATGCCAATTGACCACAGCAAAACACTGAAACATCCATTTTCCACCAATGCTGTATAACTTTTAACAAGTATGCTACAGGGAAGGACCAACAGGAATTGTAAGACGTTGGAGAATATGCTTGTACCCCAGatgtacagtactagtcaaaagtttggacaccttctcattcaatgtttttttttttttttttactatttgttacattgtagaataatagcgaagacgtcaaaactatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476032 lncRNA upstream 57650 58269119 ~ 58269426 (+) True G420062
TU476025 lncRNA upstream 80538 58245990 ~ 58246538 (+) True G420055
TU475991 lncRNA upstream 116966 58205864 ~ 58210110 (+) True G420026
TU475962 lncRNA upstream 173236 58151976 ~ 58153840 (+) True G419999
TU475958 lncRNA upstream 184968 58141889 ~ 58142108 (+) True G419995
TU475990 lncRNA downstream 3030 58373120 ~ 58373991 (+) True G420025
TU476067 lncRNA downstream 9826 58379916 ~ 58380305 (+) True G420093
TU476075 lncRNA downstream 19395 58389485 ~ 58389869 (+) True G420101
TU476103 lncRNA downstream 41150 58411240 ~ 58412993 (+) False G420117
TU476095 lncRNA downstream 41160 58411250 ~ 58412993 (+) False G420117
XM_021603505.2 mRNA upstream 121706 58199387 ~ 58205370 (+) True LOC110524142
XM_021603503.2 mRNA upstream 166942 58158521 ~ 58160134 (+) True LOC110524140
XM_021603502.2 mRNA upstream 202678 58120065 ~ 58124398 (+) True LOC110524139
LOC110522977 mRNA upstream 240807 58084721 ~ 58086269 (+) True LOC110522977
XM_036977954.1 mRNA upstream 296182 58028761 ~ 58030894 (+) True LOC110524136
XR_005051769.1 mRNA downstream 31339 58401429 ~ 58404889 (+) True LOC118964627
XR_005051587.1 mRNA downstream 110847 58480937 ~ 58482309 (+) True LOC118964530
XM_036977960.1 mRNA downstream 113953 58484043 ~ 58491225 (+) False LOC110524147
XM_021603532.2 mRNA downstream 130015 58500105 ~ 58505933 (+) False LOC110524149
XM_021603530.2 mRNA downstream 130017 58500107 ~ 58505933 (+) True LOC110524149
TU475377 other upstream 427428 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 959739 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 1368911 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 1401900 56923924 ~ 56925176 (+) True G418251
TU473915 other upstream 1597255 56726185 ~ 56729821 (+) True G418119
TU476101 other downstream 43033 58413123 ~ 58416776 (+) False G420117
TU476694 other downstream 572638 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 2324167 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 3351447 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3735433 62105523 ~ 62105872 (+) True G424079

Expression Profile