RNA id: XM_021603517.2


Basic Information

Item Value
RNA id XM_021603517.2
length 5922
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC110524144
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58379780 ~ 58409320 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actcatgcAGGTTTGGAGTGTGAGACTCTGAATAGGCCACCTGGCTCCTTGGCTGCTGGCAGTCAGAGACAGAGCCTGAATGTCGAGCTCTCTGGGCCTGAGATGGGCCAGTACGACACCCAGGCTCTCTCAGAGGCCCTGATGGGATTCCTGCAGGACCTGCCATCCCCCGTCATCCCAAAGTCCATCTATCCCAGCCTGAAGACTACCCTGCAAGAGGAAGAAGAGTTGTCCGTCGGGGAGACAGGCAGGCGTTTGCTGAAGGCTCTGGAGCCTCCGGCTGTGCCCCTGCCGAGCCTGCATTACCTGCTCAGACACCTGGACCGAGTGGGCCAGGGCTTGGCCCACAACGGCCAGAGCTCGGCCCACAACGGCCTGGACCCCCACACCCTCGCATTCCTCTTCAGCCCTCTTCTGCTCACCACTGGGTCAGAAGAAGGTCATCAGGTTCAGGTGCTGGAGAGGCTGCTGGTGGCGAGGGCCTGGGAGCTGGACCAGATGTCATCAGCCCTACCTTCCAAGCCTTCCAAAACCAAAGCCATGGCATCTTCTGTCGTCAATGGGGATGGCAGCAAGATGGCTGATGCAGAGTGGTACTGGGGAGACATTTCCAgAGATGAGGTGAATGACAAGATGAGAGACACACCAGATGGCACTTTCTTGGTCCGAGATGCCTCAAGCAAGGTGCAAGGAGAATATACATTGACTCTCAGGAAAGGAGGAAACAACCAGCTGATCAAGATCTTCCACCAAGGAGGCAAGTACGGCTTCTCTGAGCCGCTGACCTTTGCTTCTGTGGTGGAACTCATCCTGTATTATCACCACGAGTCGCTGGCCCAGTACAACCCCAAGCTGGACTCACGGCTACTGTACCCAATCTCCAAATATCAGCAGGATCAGGTGGTGAAAGGGGACAGCGTGGAAGCAGTAGGAGAGCAACTGAAGGTGTACCACGAACACTGCCAGGAGACGAGCCGGGAATATGACTTCTTGTATGAAGAGTATACTCGCACCTCTCAGGAGTTACAGATGAACCGCACGGCCATCGAGGCCTTCAACGAGACCATCAAGGTCTCAGAGGAGCAGTGCGAGACCCAAGAAGGCTATAGCAAGGAGAACATTGACCAGTTCCTCAGGGAGGGAAACAGCAAAGATACTGAGAGAATCCAAAGTAATTGGGATAAGCTGAAGTCGCGGGTGACTGAGATCCATGACAGGAAGAGGAAGCTAGGGCAGGACCTGAAGGAGCATGCGATGGACAACCGAGAGATCGATAAGAAGATGAGTAGCCTGAAAACGGACCTCGTGCAGCTGAAAAAGATTAGAGACCAGTACCTGGTGTGGCTCAATCAGAAGGGCACCAGACAGAAGAAGATTAACGAGTGGCTGGGGATCAAAAATGACATGGAAGACCGttcctcccctctacctcccagCCTGTATTCTCTGGTGGATGAGGAGGAAGACCTGCCGCACCTCGACGAGCGCACTTGGTACGTGGGCGACATCACGCGCAGCCAAGCCGAGGAGTTGCTGAGGGGAAAGGGTGACGGCACTTTCCTGATCCGAGACAGCCAGTCCCAGAAGGGCTCCTACGCCTGCTCTGTAGTTGTGGACGGGGACATCAAGCACTGTGTGATATTCAAGACCTCCACGGGCTACGGCTTCGCCGAGCCCTACGACCTGTACAGCTCCCTGAGAGAGCTGGTGCTtcactatagacacacctcccTGGTCCAGCACAATGACTTGCTGAATGTAACTCTGGCATGTCCTGTCCTAACCCAGCGGCAACCCAGATGAGACGCAAGATAACCCGGACAGGGCCTGGCACACACAGAGGAAACACACAGAACTCACAAAGACCACAAACCCTCACTTTTCCCatacaagaaaacaaaaaagcaaACGGCTTTCTGCGCGTTGGgtttgagaggagggggagggcggAGTGGATTTTGACATGGAAGAGCACATTCACGTGTTCTATTTTTGTTAAATCTCTACAACACTACACCGTTTTTTGGAGAAACATATTTCAATCTCTAAAAGTAATTGCTGTAGATTCTTTTGAAATCGACTTTGaaatgtatttctttatttttctgtTACTTTTTTCTACAGTTAAAGAGGGGCTTTTTTTGCGAGAGGGTTTGATATTCAAGACACGGAGAACAAAAAGACCTGCCAGCGCTTTTCTGTTTACATTAAGCCTTGCTCACATTGTCCACTGTGGTAAAATGCTTAAAGGGATTCTCCCGTACTTTTCactactttttagccagtagttctgaaagaaGCGCTCACACTATGTCTATGTACTACGTCTATGTGCACCACTTCATTCCTTTCTGTCTTGCTCATTTGCAACTTGCTAGCTGTTACTGACatggcgaggggctgaagctcattggttgaACTCAAATTACTAGGGGGCTTGCACAGGAGGGGGAGGATTTTGGGGAAAATGGcgcagcacagcttccagaaaaacagttgctttcaaactagggattttgtggctaattgaggGAGAACAGTAATTATTAACTGCcaatgttttatttctttacttcaAGTACATATTAATACAAACACAAAATCCACAGTGTTGggtagcacacatacacaaagaaAGCATTCTATCTGCTCTCTATGTAACCTTTCATGCTATGTGCCCTTTCACAGTAGAACAACACTTGGTGGTGAAAGTGCCTTCTGTTCTAATCCTCTGTCTTCCATTATTTCTCTGTAAATCAGAGTCCGTGTGGATGCCTGGCCCCAATCAGATGCCAAGTGTTTTGTACAGCACTGTGTGTGAAACTGGAAATCTGAAACGGACCTCACTATTGATGGCCTTAGAGCAGATGGGCAACTCCCTCAGAGTTGTACCTGGCACTACTGCCACTGCCTGCTCAGAGTGCACACTTCTGGTTTCCCAGGTCTCAATCAGTTGCTGATTTAAAGGAAAGACACTATGAAGACGAAACTTGCCCACCCCTGCATTAGTGTGTGTATGATGGTGGTGTTGGAATTGTCCATGTTGAAAATGGATTTATGTTCACATTTTTCGAGTCGATCATTGGTAAATCTCGTCGGGGGATGAGTTGCTTTCTGTTGACATTAGGTTATGTATGCTGTATGAACTGAGGTATTTGTCAGTCTCTCGTTAAGGTATAAGTAGCCTATTTCAATGATTCAAAACGCATTTTCCTTAATTGGACCTTACCTGACACACTTTATGAATGCACTTATTTCTCAGGGCACAAGCTTCCAAATCTGTTTTGTGATGCTAACATACACAAGATATTCTTGTTAGATTTCGAACAAACTACTTTGACAAACTGATTAGTACTATGCAGCGAGTTCGGAGACCACTTGATGACGCCTCGTTATCGACATTGATAACCCTCACATTTGTCGTGTATGAATCAGACCTTTAAACAAGACTAGAGGAGGTATTGAGGTAGAAATCCAACGGCAGGGACACAGAAGGTCATAAATCATTAGCTTTTGCACGCAAGAATCTCACTTGATTTAGAGATCTTGTATGGTATTATTATCATGTTCTTAACCTAACCAGAAGCAGGGGTGACGGGGTTATTGGTGCTAGAAGTGGACGATGTCTTGTATAGTATGATGACATTGCATTGGTGCATTTTATTGCTCACTATTAGGAGTGATTCAATTGCCCAGCATGTTGGGATTGGTGATGTACGTTTTATAACGGTCAacattgtttgttttgtgtgttatgTTAATCTGGTAAACCTGTTTCTTATGTGTATCTGGTAGTTAGGAGAAAAGGTCTCTTTGGAGAGAGATGACAGATGAATAGTCTGTGTACTATTTACTGAACATAGCATTTCAGCCAGAGTCCTGCTCAGTTAGGCTACCCTTCAGGTCAAAGGATCTTTGAAAACTGTGAGAttgcatttttttggggggggcatgTGAGAGagtactgtatgtaaatagaGAGAGCAATCCCCCAAAAGTTTCCGGTTGATTTTGAAATTGCACTTGCAGTGTAAGACCATGCTTGTTCTCCAACGTGTAGACAGTCTTTTCAACGTGAGCCAGGCTCAGAGGGATTGTTATATATCTCCCCTGGCCTTTTCTGTGTGCTTGGGCCCATATTGGAGATTATGACTATCGTCCATTGATTGGAGATTATGACTATCGTCCATTGATTGGAGATTATGACTATCGTCCATTGATTGCCCCACAGACTGTTATGACAGTGCAGCATAAAACACCAAACGCTTCTTCAGCTtgtgagagaaagtgtgtgagtgGGTAAATGTTTGAGGTTTGAGTCGGGAGGTTGCCTTGCCAATATTATAACTAATATTATAACTGTAAATGCACCACAAAGACATTAATATGTTTCAGGAGTTTTATTACAATTGGACTTGAACATGCTCATTTAATAACCGGCTATGATAGGTCAGGAACACTCCTCATCGTGGACATCTCATTCATTGTAAGACAAGGATGGCATCATTGAAGAGGCACTTTTAAGGGTCTGTTTGAAATGGGTTTTTATGAAAGGCCGTTAAACCCgtctgtgtttcagtgtttttGTTATTTGTTCATCATAACCTGAACAGATTTCATTGAAGAAGCTAATATGAATTTTTTGGATCttctttacatttacatttaatgTGTTTACAATCTCTAAATAAGCAAATAGATTAAAAAGACTGTTTTCTAACGATCTATTTGTCTGCTCAAAAGCATATCTAGAATGAAATTCTGTCGTAGTGTTTGTTGTATCTTGACTTTCAAATGTTTTTAAGACTGCTTGGTTTTTAACTTTTGCATTTGTGAAACTGTAATTTATACAACCTTGACATAAGTTGGAGTTAAGTACTTTAAAACATGGAAAACCCCCCCAAAACATTGCAAAATGCACTTTAAAATTGACTGTAAGCAACATTAGTCCAACTCTGTAAAATTGTTATTGCATTACTTTCTGGCTGCACATAAACAATGGTATGTTTTCATGTTGTATTTGTTAGACTGGTAGTTTTGTATAGGACTAAATTAACCATTTGTTAAAAAGAGTATAGTTGTCAAAATACCTTTTTGTTGACATTTTTACCGACAGTTTTCTGAGAAAAGTAATCCCTTGCTCAGAAGGCAATTGAGTGTAAACGTTTGGAGAATTGTGATATCTACTGTCAAAATGTGGTCAGATGGTCTATGATGTTCCTCACTGTTGTCTTGGCAATTTTCTGTGAAGTTAGTTACTACTGATGATGGACTGCTTTATTTAGGTACTGCTTTGATGTTGTGACTGTATGTATGTTATTAATTATCTATTAgataattaatcaatcaattaaGAAGGCTTTTACTCTGGCCTAAGTTTTATGTTTGTTCTTCTGTTTTGTTTTGCCAACCAATTTGTCTCTACGTAAAGAGAAGTGGTTGAAGAGATGAAATGGCTGTTGTAATTGCTGTGGGATGTCCAATGAGAGAGTTTGGCTTCTCAAGTGGTCACAAAAATCCATCTCGTTAGCACATCCTGAGGATGATCGTAATCATTGGTGGGAGGAGCTCCAACCCACTGGCTTTTCAAATTGGTCAGAGTGTTGTCTGAGATAAGTGTCAAGGAAGGGCTTTGGCTTCAGTACCTGTAAGCAACATGACGTTTGCACCTGTATTTGTCTTTTTCTTCTGCTCTACTTTCAAGAAATCCCAAGGAAAGTCGAAGCCCAAACCGGCTTGTGAATGGGTCATCAAGGATGATCATCAAGTTTGAATAACTGCACTGAGACATTATTATAATGACTGCTGGGCTCAGTTTAGGTTTGTTTTATCAAATCTATTCAAGATTTTTTTTCTCTTGATTCTGGCTTGAAGTATTTCATCTGTCGCAGTTGAATGATTAAAATGTCATTTTCTACTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476387 lncRNA downstream 5746 58373269 ~ 58374034 (-) False G420369
TU476385 lncRNA downstream 5802 58373159 ~ 58373978 (-) False G420369
TU476388 lncRNA downstream 5802 58373269 ~ 58373978 (-) False G420369
TU476389 lncRNA downstream 6105 58373269 ~ 58373675 (-) True G420369
TU476384 lncRNA downstream 9770 58368907 ~ 58370010 (-) False G420368
TU476451 lncRNA upstream 5763 58400559 ~ 58400767 (-) True G420429
TU476442 lncRNA upstream 16537 58411333 ~ 58413009 (-) True G420420
TU476444 lncRNA upstream 19685 58414481 ~ 58415479 (-) True G420422
TU476459 lncRNA upstream 25290 58420086 ~ 58420474 (-) True G420437
TU476464 lncRNA upstream 61569 58456365 ~ 58456602 (-) True G420442
XM_021603504.2 mRNA downstream 192731 58163918 ~ 58187049 (-) True LOC110524141
XM_036976510.1 mRNA downstream 259741 58115798 ~ 58120039 (-) False pgpi
NM_001160660.1 mRNA downstream 259747 58115817 ~ 58120033 (-) True pgpi
XM_021603500.2 mRNA downstream 270335 58092311 ~ 58109445 (-) False LOC110524138
XM_021603522.2 mRNA upstream 22076 58416872 ~ 58454099 (-) False mast3b
XM_021603520.2 mRNA upstream 22076 58416872 ~ 58475232 (-) False mast3b
XM_021603518.2 mRNA upstream 22076 58416872 ~ 58475233 (-) False mast3b
XM_021603519.2 mRNA upstream 22076 58416872 ~ 58475233 (-) True mast3b
XM_036977962.1 mRNA upstream 151588 58546384 ~ 58562388 (-) False LOC110524151
TU476193 other downstream 265720 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 673844 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 753606 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 768213 57611059 ~ 57611567 (-) True G419603
TU474707 other downstream 1545185 56834026 ~ 56834595 (-) True G418830
TU476443 other upstream 18332 58413128 ~ 58414143 (-) True G420421
TU477090 other upstream 631307 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 738074 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1705969 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2664198 61058994 ~ 61071143 (-) True LOC110524239

Expression Profile