RNA id: XM_021603530.2


Basic Information

Item Value
RNA id XM_021603530.2
length 2455
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110524149
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58500105 ~ 58505933 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCAATAACAGCTGAGTGTAATCTTAACAAATGCCTTAAACAGAAGTCCAAAACTACATATACGcctgtttaaatatatatattatgaaaTGCACAGGCAAATGCAAATCGCTGTGGAATCCGTCTAGCTAGCTGATTACACTTCTGTTCCTTGTTATATCTTGTGCAGTGGTTTTCCCAGACCTAGACGTCCTTGCATTCACAAAAGTACAATTGCGCGCGCGCTCAGTGCAAACCCGAAAAAGGTTCCAGCACAACTGAACATTTACATCTGGGCCAGAGATCACCATATTTTAGCACGGGGGAAAGTAACATAATTGGCTTATCGATAGGCTTGATGCGTTTATTTTGTTATGCCTTTGACCTACTGCTACATTAGAAAATGGCGGAGTCGGGTGGTGGGGATTTCGCCTCGAATCGTCCGCAGAACAGTATGGCTAACCAGAATAGCACCCTGCGTTGCACGTTCTCAGCCCCAAGCCATAGCGCCACTCTCCTGCAGGGCTTGTCGGTCCTGCGAGTCCAGGGGCAGCTCCTGGATGTGGTGCTGGCCATCAATGAGGAGCGCTTCCAGGTTCACAAGGCAGTGCTGGCCTCCTGCAGTGACTACTTCAGAGCCATGTTCACCGGAGGCATGAGGGAGTCAAACAAGGATACCATTGAGCTGAAAGGCTTGTCCGCCCGCGGCCTGAAACATATAATTGACTTTGCTTACAGCGCAGATGTCACACTTGACCTGGACTGCATTCAGGATGTACTGGGAGCAGCTGTCTTTCTCCAGATGGTCCCAGTCGTGGAGCTCTGTGAGGAGTTCCTCAAGTCAGCCATGAGTGTAGAGACCTGCCTGAACATTGGCCAGATGGCCACCACCTTCAACCTGTCCTCCCTCAAGGAGTCTGTGGACACCTTTACCTTCCGCCACTTCCTGCAGATCGCTGAGGAGGAGGACTTCCTGCACATTCCCATGGAGCGCCTGGTCTTCTTCCTGCAGAGCAACAAGCTGAAGAACTGCAGCGAGATCGACCTGTTCCACGCTGCCATCCGCTGGCTGCAGCACGACGAGGCCCGACGGGCCGGAGCCAACAAAGTGCTCTGCCACGTACGATTCCCACTCATGCGCTCCTCGGAGCTGGTAGACAGCGTGCAGACGGTGGACATCATGGTAGAGGACGTGCTGTGCAGGCAGTACCTCCTGGAGGCCTTCAACTTCCAGATCCTCCCCTTTCGTCAGCACGAGATGCAGTCCCCTCGGACCGTGATCCGCTCCGAAGTAGTTTCGCTCATTACCTTTGGTGGGACACCCTACACTGACAATGATCGTACTGTGAGCAGTAAGGTGTTCTATCTTCCAGACATTGCCGCGCGTCAGTTCAAGGAACTAACGGAGGCGGAGACAGGTTCCAGCCACGCCTGTGTATCGGTGCTGGACAACTTTGTTTACGTAGTAGGCGGGCAGCACCTGCAGTACCGCAGCGGCGAAGGGGCGGTAAACGTCTGCTTCCGCTATGACCCGCACCTGAGCCAATGGCTGCGCATCCAGCCGATGCAGGAGGTGCGCATTCAGTTCCAGCTCAACGTTCTTCAAGGACAACTCTACGCCACTGGGGGGCGCAACCGATCTGGAAGTCTGTCGTCCGTAGAGTGCTACTGTCCCAAGAAAAATGAGTGGACCTACGTGGAACCACTGAAACGCAGAATCTGGGGCCATGCAGGAACTCCCTGTGGTGACAAGCTCTACATCTCAGGGGGTTACGGTGTTTCGGTGGACGATAAGAAAGCCCTGCACTGTTATGATCCCACATCTGACCAATGGGACTTCAAATCGCCCATGAACGAGCCCAGAGTGCTTCATGCTATGATCAGCGCCAAAGACCGTGTTTACTGCCTGGGCGGTCGCATGGACCACGTGGACCGCTGCTTTGACGTCCTGGTGGTTGAGTATTATATTCCAGAGAATGACCAGTGGACCACTGTTAGCCCCATGCGAGCAGGGCAATCTGAGGCAGGCTGCTGCTTGTTGGACAAAAAGATCTATATTGTTGGAGGGTACAATTGGCATCTAAACAATGTCACAAGCATCGTGCAAGTGTACAACACAGAGACTGATGAGTGGGAGAGGGACTTGCACTTCCCTGAGTCTTTTGCAGGAATTGCGTGTACGCCGATCATACTTCCACAAACCACCACGCAACGGTAATCCCTCTGCCCAAAGTGACTGTGACAATTTGATTCATGGGTGATTCCTCACAAAActgaaaacaaaaacaataccATGATTTGGGAGATTTTCAGTCAATTTAATCCACAGAAGGGTCCTTTGGAAGAAGGATGGatgacacatacagtgccttcagaaagtattcacaccccttgactttttccacaacttgttgtgttacagcctgaatttaaaattgattaaatttggattgtgtgtcactggcctacacacaa

Function

GO: NA

KEGG:

id description
K10463 KLHL26; kelch-like protein 26

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476500 lncRNA upstream 6434 58490968 ~ 58493673 (+) False LOC110524147
TU476501 lncRNA upstream 6434 58490968 ~ 58493673 (+) True LOC110524147
TU476488 lncRNA upstream 22702 58477182 ~ 58477405 (+) True G420465
TU476146 lncRNA upstream 24855 58474846 ~ 58475252 (+) True G420159
TU476142 lncRNA upstream 31911 58467992 ~ 58468196 (+) True G420155
TU476525 lncRNA downstream 51455 58557388 ~ 58558448 (+) True G420495
TU476542 lncRNA downstream 72171 58578104 ~ 58578620 (+) True G420511
TU476527 lncRNA downstream 73647 58579580 ~ 58581463 (+) False LOC110524154
TU476546 lncRNA downstream 96317 58602250 ~ 58602784 (+) False LOC110524154
TU476549 lncRNA downstream 113418 58619351 ~ 58620032 (+) False LOC110524154
XM_036977960.1 mRNA upstream 8882 58484043 ~ 58491225 (+) False LOC110524147
XR_005051587.1 mRNA upstream 17798 58480937 ~ 58482309 (+) True LOC118964530
XR_005051769.1 mRNA upstream 95218 58401429 ~ 58404889 (+) True LOC118964627
XM_036977958.1 mRNA upstream 130017 58327076 ~ 58370090 (+) False LOC110524143
XM_021603534.2 mRNA downstream 6996 58512929 ~ 58539074 (+) False LOC110524150
XM_021603533.2 mRNA downstream 6996 58512929 ~ 58539436 (+) True LOC110524150
XR_005051817.1 mRNA downstream 73609 58579542 ~ 58595222 (+) False LOC110524154
XR_005051816.1 mRNA downstream 73609 58579542 ~ 58598772 (+) False LOC110524154
XR_005051814.1 mRNA downstream 73609 58579542 ~ 58602841 (+) False LOC110524154
TU476101 other upstream 83331 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 600459 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1132770 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 1541942 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 1574931 56923924 ~ 56925176 (+) True G418251
TU476694 other downstream 436795 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 2188324 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 3215604 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3599590 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 3777219 62283152 ~ 62306937 (+) False LOC110524265

Expression Profile