RNA id: XM_036977961.1


Basic Information

Item Value
RNA id XM_036977961.1
length 4235
RNA type mRNA
GC content 0.46
exon number 18
gene id LOC110524151
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58546384 ~ 58567683 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCCCACTCTCTCTCAGACTGTCTTAACCCTGCTACAGGAGCCCTCCCTGATTCTTCTTGAAGACAAAGGGCAGAATTTGGATAAAGGACCTGGTCGAACCGCACGAGACTTTACACAGTGGCACCGGACTTCATATACACTTACCTGTCTTTCGCTGTAGAGACGTCGAAGGTCAAATGAGAGCATGCTGCGGATTCTGGTGTTGGTGATTTCGCTGAGTGTGAGCAGTGACCTAGTAGCTGGTCAGAGAGATGGGGAAATTATTAATCAGATCAAGGGAACGAATCAAGCCTTGGCTGAGATTAAAGAACTGCTGAAGCAACAGATCCAAGAGATTGTTTTCCTGAAGAACACAGTGATAAAGTGTAAAGCCTGTGGCATGCAAGGTCCCCCTCGCACCTCCTGTGACCCTAACCCCTGCCACATGGGAGTAACGTGCATTGAGACCGCCGGGGGCATCAAGTGTGGCCCCTGCCCTGAGGGCATGGAGGTTAATGGTACCCACTGCACACATGTGGATGAGtgtgtcgtGAAGCCCTGCCACATGGGTGTGCGCTGCATCAACACCTCTCCAGGGTTCCGCTGTGGCCCCTGTCCCACTGGCTACACCGGCCCCCGGGTGCAGGGAATAGGCCTCTCCTACGCCACTAACAACAAACAGGTCTGTAAGGACATCAATGAGTGCGAAGGACTCAAGAATGGAGGTTGTATGGAAAATTCCAACTGTGTGAACACACCTGGCTCGTTTAAGTGTGGCTCCTGTAAGGCAGGCTATGTGGGGGATCAGAGCAAGGGCTGTAAGCCTGAGAGAGCGTGTGGTAATGGCCAGCTCAACCCCTGCCATGCCAGCGGAGAGTGCCTTGTCCAACGAGATGGGAAAATAGAGTGTCAGTGTGGGGTGGGATGGGCTGGCAATGGCTACTTCTGCAGCTCTGACATTGACATTGATGGCTTCCCTGATGAGAAACTGGAATGCACCGAGAGGAACTGTGCCAAGGATAACTGTCTAACAGTACCCAACTCGGGTCAAGAGGATGTAGACAAGGATGGCAAAGGAGATGCCTGTGATGAGGATGCAGATGGCGATGGAATCCTAAATACACAGGACAACTGTGTGCTGGTACCAAATGTCAACCAAAGAAATGTGGACGAAGACGACTTTGGAGACGCCTGTGACAACTGCCGTATGATCAAAAACAACGACCAGAAAGACACTGATGTTGATAGACTGGGTGACGAATGTGACGAAGACATTGATGGCGACAGAATCCCCAATAATCTGGACAACTGCAAAAGGGTTCCCAATGCTAACCAGAAGGATCGAGATGGGGACAAAGTCGGAGATGCTTGTGACAGTTGCCCCTATGTTCAAAACCCTGACCAGTTGGATATGGACAACGATTTGATCGGAGACCCTTGTGACACCAATAAGGACAGTGATGGTGACGGTCACCAGGACTCTCAGGACAACTGCCCTGCAGTCATCAACAGCTCCCAGCTGGACACGGACAAGGACGGCCTGGGGGACGAGTGTgacgatgacgatgatgatgatggtattcCTGACCTTCTGCCCCCAGGACCGGACAACTGTCGCCTCATTCCCAACCCTCTGCAGGAGGACTCTGACGGTGATGGTGTTGGGAATGTGTGTGAGAACGACTTTGACAACGACACCATCATCGACAGCATCGATGTGTGCCCGGAGAACGCCGAGGTCACTCTCACAGACTTCAGGGCCTACCAGACAGTGGTGCTGGACCCAGAGGGAGACGCACAGATAGACCCTAACTGGGTGGTGCTCGATCAGGGAAGAGAGATCGTCCAAACTATGAACAGTGACCCTGGACTGGCTGTTGGTTACACAGCTTTCAACGGTGTTGACTTCGAAGGGACTTTCCATGTGAATACCGTAACGGACGACGACTATGCAGGGTTCATCTTTGGCTACCAGGACTCTTCCTCCTTCTACGTGGTGATGTGGAAACAGGTTGAGCAAATCTATTGGCAAGCCAATCCATTCAGAGCTGTGGCAGAACCAGGGATCCAACTGAAGGCTGTGAAGTCCAACACGGGACCAGGGGAGAATCTACGCAACTCCCTGTGGCACACTGGCGACACCAGTGACCAGGTGAAGCTGCTGTGGAAAGACGTCCGCAACGTGGGCTGGAAGGACAAGACTTCCTACCGCTGGTTCTTGCAACACAGGCCCCAAGATGGCTACATCAGaTACAACCCTCGAGGACTTTGACTCATACCAAGTCCAACCCATTCAGCTACAGTTCTAATACAGCATGCACACAACTCTGCCCAAACGAAGACTGGGAGGACATTCCATCTACACCCCCACATTCTGGAACGCATGGCTCCCAGCTGAACAGTGCATGGTTGTGTCTGTAATGGCACCCTatctcctatatagtgcactacttttgattaaAGGCTATATAGGGCCCGATTTGGACTTAAGAAATTATGCCTTTCTTATGCACGCCTTTCCTACACACTTCTCAGTAGTtagtattcagacttaccttatgaaGGTACGTAAAGGGCTTTACAGGCATGCTTCCCTTGTCATTCAATAGAGTTTTCAGTGCATTTATCTTAAGCCATCTCTTTAAATATAGTGTAACTTTTAGTTAGTATTTTGttgacagactcaatagaatatattgaatATTAGtgatcaatgaaagaaagccatctaaatatatgcatatcattCTCTGTTTCAGCACCATTTGGTAGATtcaaaaaatactctgatcttgtagattatttagggttaggaaagtatttatgaaatcataaaaacaggtttggagagctTTTACGCGGAAAAGAAGagagtggtttgattcattcagaAAATTGCCACATTGCTATTTAACCCATGGTAATGTTGGAAGATTAGTGTACATTGAATTATAAtagggagaatagtgtacaatagtagACTATACCCTCGTCTGTTGCCTGCACTAGCCATGGTACTGTGTGATGACAGCCGAGTATTGCGCCATGCGTAGGCTTCAAACTGTTAATGCGTGGTCTGCACTCCGCTCcataacgatttaattagcctaactgttactaatgatcctcagcaacaaccacaTGGCCATGAcagcgtttacagaggaagcaaatgcAGGTAAACAAAACGATGTCAttaaatggaatgataatgtatgctataccaactgaagggaactaacagtaaaCTGGCAGTTAAATATGTGTGTTATTAAGCCTACTGACGGTCAATactgatagtggctaatatttaacatgatagaaataggaaacAGAAAGTCgtggtagcctataattaagacatcaGAGTGCCCAGCTATGAGTTAAAAGGCTGTGCAATTTAAATTTTGCATAATAGCACGGCCTTTCATAAACTTTACTTTGAGAAagttgatatgcttcagtttgaAGCCatatatgactggtttcacatgtCTCCAGCAATTGGAAGGTAAAATATATCTTAAACAAGTGTAATTTATATTTATAGTTTCCTTATCCAGACAGATTACACTTTTAACTAGCGCTTATCAAGTTGTAAATGACAGTGCATGaagaatggtgttatttctattgGAAAAAATAAAGTAATGCTTTTTCCACTTGAAACCGGTAGGTTCGCTAGACCTTATGAGGAAATAATGAATATGAAAAGGTGGAAGAATTAttagggaattaagtcaaggtcagaatacagcaTCTGTTGACACACCATCATTTATTTGATCTCCACCCAAAACAAATAGCAGGTGAAcagcatgctattctcatgcttaagttcaaggtcagaataagcatagagaaaagtgcataaaaatgGAATTACTACGTTCCATTTAAGCACGCTTAACTCGGGTCGGAATTGGGCCCatattgaatatttttttttagaaggACCCTGTGAGATGTGACTCAGCAAAATGGAGGCTGCCATATTGGTCACCACCAGCAATGACAACATTTTCCGGTGACATTTGCTCCCCAATAATTCCAGTTCTCAGGGGACTTTTCTTTGTCTACTACTACTCTGTCAACAATATAGAAATGTGAGGATAGTTGTGTGCGTTTTGAATAATCAGGGTGTGGACAGAAAATGTGTATTACATTGTGAGCGGACTAACttttttttgagggggggggggggctatgcaTTAGATTGCATGTGATCAATTAATAAAATGTTGAACCACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476844 lncRNA downstream 23648 58521878 ~ 58522736 (-) True G420773
TU476832 lncRNA downstream 39382 58505075 ~ 58507002 (-) True G420763
TU476491 lncRNA downstream 67549 58478366 ~ 58478835 (-) True G420468
TU476489 lncRNA downstream 68386 58477787 ~ 58477998 (-) True G420466
TU476464 lncRNA downstream 89782 58456365 ~ 58456602 (-) True G420442
TU476883 lncRNA upstream 34715 58602398 ~ 58602750 (-) True G420808
TU476885 lncRNA upstream 51770 58619453 ~ 58620031 (-) False G420809
TU476884 lncRNA upstream 51901 58619584 ~ 58620031 (-) True G420809
TU476909 lncRNA upstream 89431 58657114 ~ 58657407 (-) True G420825
TU476912 lncRNA upstream 91595 58659278 ~ 58659542 (-) True G420828
XM_021603518.2 mRNA downstream 71151 58416872 ~ 58475233 (-) False mast3b
XM_021603519.2 mRNA downstream 71151 58416872 ~ 58475233 (-) True mast3b
XM_021603520.2 mRNA downstream 71152 58416872 ~ 58475232 (-) False mast3b
XM_021603522.2 mRNA downstream 92285 58416872 ~ 58454099 (-) False mast3b
XM_036977959.1 mRNA downstream 137064 58379780 ~ 58409320 (-) False LOC110524144
XM_021603537.2 mRNA upstream 5575 58573258 ~ 58578611 (-) True LOC110524152
XM_021603545.2 mRNA upstream 103788 58671471 ~ 58675928 (-) True LOC110524158
XR_005051820.1 mRNA upstream 266579 58834262 ~ 58836111 (-) True LOC110524167
XM_021603553.2 mRNA upstream 284336 58852019 ~ 58856447 (-) True gamt
XR_005051821.1 mRNA upstream 415005 58982688 ~ 59001580 (-) True LOC118964628
TU476443 other downstream 132241 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 432324 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 840448 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 920210 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 934817 57611059 ~ 57611567 (-) True G419603
TU477090 other upstream 458420 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 565187 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1533082 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2491311 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 3049187 61616870 ~ 61617244 (-) True G424474

Expression Profile