RNA id: XM_021603537.2


Basic Information

Item Value
RNA id XM_021603537.2
length 2232
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110524152
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58573258 ~ 58578611 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctgtgtgtgttatttgcAGAGCACTATGGCAAATCGTCAATATATTTCTTAGGCCAGCTATCGTTCAAAGATTAGATTAAATAATGTATATAGCTGCATATCTGATCAAAATTGGGGACCCAAAAATAAAAGCCAATCTGTCATTTTTCAACCGTAGCGACGAATTACATGGGGAGCTGACAAATAAGACCAGCTGGAATAGAAAAAACGCTCGGCCGAGAACAAATTATAAAGCTGTGCAGATGAGGTATATTAATAGGAGGGCTTGAGTGGCACAGTCTTTTTACTCGTGAAGACGTGGAGCTTCGTGGCGAGTCGCCGGACAACTGACATTCTAGTGATCATAAAATACACGCGGTAGTGTTATAAATCTTAAATCATGGACGTGTTGGAAGTCCTCAATTTGGGCGATGTTGCCCAAAATTTCTCAAAAATGGGAATGTTTCCAGTTTTTGATCTTGCTTATTACATCGTGTCCATACTCTACCTCAAGTATGAACCAGGGTCAGTAGAGGTGGCTCGCAAGAGCCCCGTGGCCTCTTGGCTCTGTGCCATGCTCTACTGCTTTGGGAGCTACATCTTAGCAGACGTTCTGCTCGGCGGTTGCCCCCTGGACTACTTCCAATACAACAGCCACATCCTCCTAGCCTCCGCTATTTGGTACCTCGTCTTTTTCTGCCCTCTTAATCTGTTCTACAAATGTGTGGCTTTCCTGCCTGTAAAGCTGGTGCTGGTAGCCTTAAAGGAGGTTGTCCGCACTCGTAAAATCGCAGCTGGTGTGCACCATGCCCATCATGCCTACCATAACGGCTTCCTCATCATGGTCATCATCGGCTACGTCAAAGGATCAGGAGTGGCTCTCATTTCCAATTTTGAGCAACTGCTGCGTGGTGTGTGGAGGCCCGAGACCAATGAAATCCTCAACATGTCATTCCCTACTAAAGCCAGTCTGTATGGAGCCATTTTGTTTACACTTCAGGAGACACACTTGCTTCCTGTGTCCAAGACCACCCTCATCTGTCTTTTCACTGCGTTCATGGCTACTACAAAGGTGATTTTGACCGCCCGCCACTCTCACGGCTCTCCCTTCGTCCTCATCGAGTCTTGGGTGTGCCACTTGCTCTTTGGCTCCCCTCTTGGAGGTGGTGAGGAGGAGCACCATGCTGCCTCTGCCCCTGCACCTGTCGCCCCTGTCTCACCAGTCAAAACCAAGGAAGAGTTTGGCGAAGGCACCCGCAAGAGGAAGTCCAAGAAAGCAGAGTAGCACGCAAACTACTACACCAGTGAAGGGGAAAAAAGGTCCCCACCGCATCCACAAAACGCAACTGATCTCCCCTCATGGTCCAGCCTTCTGTTTAGACATGATGGAGTCTCCCATTCCTTGCTGGGGAAAGGTGCAGTTTGATGTTTACCAAATGAGTCCCTTTCTATTGAAGGAAATGGTGCTTTCTATGTCATATCACACTGTATGGGGATTCTGTAAATAGCTCACCAAAGTCTCAGACTTAAATCATCGTCCCAGCCAGTACATATCtacttatttatttatgtatttattgtgAAAACTGTGAACATCTCTCCTACTGTGTGCAACAGCATGTGGTGAACAGTGTTACTGCAAGTTACTTTTTTGTTTTAGGATGGCCTTTGTTTCCAGTGCTTCTGCTGTTAGCTATACATGTTTTTGGTTTAAACCCAGTCAGACCTATTTCAGTAATGTAAAGAAATTGGATCAAAAGCACAATCTGACCCTTGATCAGACAATCAGACCACAGAATCAATCAGACAATAATATAATGTGAATAATACATGGCTGCTTTTTACAAAGAAAACTAGTGAAAGTAATGTCCTTTATTAATAAAGGCAGGTCAGAATTCTTATGTGGTGAGAGTTTTTGATTCAGTTGTTTACTATGATATTGGGATATGTTGTTTAATGGTTACCGTTAATATATGCGGCTGCTGGGCATTCATTCAGAAATGTGCAATATAAAAGTACAATTAATTTTGTTTACAAAAGAGAGGGTCACAATACCAGACAGAGATAAATAGTATGAGGGGAAACTGCCACTGTACCCACATACAACACATGAAATGACTCCCTGAaaaaaataaaggttaataaCATAAATACACAAAAGTAACCTTTTAAAAGACACAACAGACGCAGGTATTTAAGGAGAAAGTTAAATGTCTTGATATACTTTTCCATAAAGAAGTTGAAATTA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016020 membrane cellular_component
GO:0005261 cation channel activity molecular_function

KEGG:

id description
K24013 TMEM38, TRIC; trimeric intracellular cation channel

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476844 lncRNA downstream 50522 58521878 ~ 58522736 (-) True G420773
TU476832 lncRNA downstream 66256 58505075 ~ 58507002 (-) True G420763
TU476491 lncRNA downstream 94423 58478366 ~ 58478835 (-) True G420468
TU476489 lncRNA downstream 95260 58477787 ~ 58477998 (-) True G420466
TU476464 lncRNA downstream 116656 58456365 ~ 58456602 (-) True G420442
TU476883 lncRNA upstream 23787 58602398 ~ 58602750 (-) True G420808
TU476885 lncRNA upstream 40842 58619453 ~ 58620031 (-) False G420809
TU476884 lncRNA upstream 40973 58619584 ~ 58620031 (-) True G420809
TU476909 lncRNA upstream 78503 58657114 ~ 58657407 (-) True G420825
TU476912 lncRNA upstream 80667 58659278 ~ 58659542 (-) True G420828
XM_021603536.2 mRNA downstream 5575 58546384 ~ 58567683 (-) False LOC110524151
XM_036977961.1 mRNA downstream 5575 58546384 ~ 58567683 (-) True LOC110524151
XM_036977962.1 mRNA downstream 10870 58546384 ~ 58562388 (-) False LOC110524151
XM_021603518.2 mRNA downstream 98025 58416872 ~ 58475233 (-) False mast3b
XM_021603519.2 mRNA downstream 98025 58416872 ~ 58475233 (-) True mast3b
XM_021603545.2 mRNA upstream 92860 58671471 ~ 58675928 (-) True LOC110524158
XR_005051820.1 mRNA upstream 255651 58834262 ~ 58836111 (-) True LOC110524167
XM_021603553.2 mRNA upstream 273408 58852019 ~ 58856447 (-) True gamt
XR_005051821.1 mRNA upstream 404077 58982688 ~ 59001580 (-) True LOC118964628
trnaa-ugc-13 mRNA upstream 447915 59026526 ~ 59026598 (-) True trnaa-ugc-13
TU476443 other downstream 159115 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 459198 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 867322 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 947084 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 961691 57611059 ~ 57611567 (-) True G419603
TU477090 other upstream 447492 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 554259 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1522154 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2480383 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 3038259 61616870 ~ 61617244 (-) True G424474

Expression Profile