RNA id: TCONS_00033270


Basic Information

Item Value
RNA id TCONS_00033270
length 1265
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id XLOC_015544
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31075576 ~ 31084080 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACCTAACTTTATGCAATGTAAATAGTTACTTACATGTGTTGCACGTTGTATAAAGACCTCAAAAACTCCACAGAACGCCGAAACTGGTCCGGTACAGGTATGAGCAACGATGTCGTTGCTCTGCATGCGTGCTGCGTCATGTGGGCGGGTCGTGAAGTTTTACTTTGGATAAAAACACTTAAATAGAGTTTTGTAGAAGCAATTTATTTTGAAGGtcagtaaaacacatttttttgatggGTAATAATAAGTTACAAAAACAATCGCAATTTTTACTTATGTAAAACTTGAATTAATTCAAAATGGAAAGGTAATCAATTTATTGGaagaaatatactttttaaaattaattcctATAGACAACACCCTTGaagaactttttacagtgtgctttatTAAAGTTCACTCTTCATCCGCGGAATAATAGTCCTCCTGACTGGATGAGCAGTGCAGGTGTGGCGGTAGCCCCTGCTCCTCCTCCAGATGCTCCAGCGCACGGATCTCCTCCAGTATGTCTGCCGGTAAGCTGATCTCCAGCGGCCGCTCCATCAGCAGCAGTTTCCGGCAGTAGTGTCTCTCGGTGCGGTCTACGGGCTTCGGAGGGAAAAGCTCGGTGCTCAGCAGGGCTTTGATCGGCCGGTCCCGGAGGTTTATCCGCAACACGCGGTGCGGTCTCCCGGGCACCCGCGGAGGCCGAAAGTCCCACCAGTTCTCCTCGGTTTCCTGCAGGAAGTGCTGCAGGTTCCGCAGCTTCAGCAGGCTCCGGGGCCCGCGGGTGGGGAAGCGCAGCTCGTGCTCGAGCTCGAAGTCTTCTATCCAGTCCCAGTGCTTGGGTCTGGTCCTCCGTTTGACTTGTCGGCGGAAAGCCTGCAGCTGCTGGTATTTGCTGTGGATGTAGGAGCAGCACTCGTTTATCTGGGCCGCGATGGACCTCGCAGTTCTCGCAATCGTCTTCGCCATCGCGCGCTGGGAAACAGTGTAATCAGCAGTAAAGTGGAATGGAGCTGCTGAGGTGAGCGAGGAGTGGGACTTCAGAGCACACCGTGAGATTTTATGGCTTCTCCGCTGAGGGATGCCTTAGTCGAGTTTCATCAGAAGCCCGCGCTGGCATCGTCTCTTTATCCTCCTCCTCTCTGCTTCTATGTGCACCAAAGGAAGCTCTCAGCATCTCAGTCTGCCACTAAACAGGTAGAGATCTCCCCGAGCAAGCTTCCCCAGAAATAGCTCCCGTATACAAGTCTTTTATAATCGCACAACTTTGAT

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0060898 eye field cell fate commitment involved in camera-type eye formation biological_process
GO:0001756 somitogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0006396 RNA processing biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0061053 somite development biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0030684 preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031074 lncRNA upstream 116728 30955780 ~ 30958848 (+) True XLOC_015542
TCONS_00031065 lncRNA upstream 253364 30808329 ~ 30822212 (+) True XLOC_015538
TCONS_00031057 lncRNA upstream 351420 30721071 ~ 30724156 (+) False XLOC_015536
TCONS_00033554 lncRNA upstream 741063 30329405 ~ 30334513 (+) True XLOC_015527
TCONS_00031040 lncRNA upstream 795072 30277334 ~ 30280504 (+) True XLOC_015525
TCONS_00031077 lncRNA downstream 16364 31100444 ~ 31132662 (+) False XLOC_015545
TCONS_00033271 lncRNA downstream 16364 31100444 ~ 31217778 (+) False XLOC_015545
TCONS_00031080 lncRNA downstream 28396 31112476 ~ 31115894 (+) False XLOC_015545
TCONS_00031081 lncRNA downstream 28396 31112476 ~ 31132662 (+) True XLOC_015545
TCONS_00033555 lncRNA downstream 187002 31271082 ~ 31345196 (+) False XLOC_015548
TCONS_00031075 mRNA upstream 91068 30960351 ~ 30984508 (+) False XLOC_015543
TCONS_00031076 mRNA upstream 93050 30969029 ~ 30982526 (+) True XLOC_015543
TCONS_00031071 mRNA upstream 115663 30916188 ~ 30959913 (+) False XLOC_015542
TCONS_00031073 mRNA upstream 122498 30948503 ~ 30953078 (+) False XLOC_015542
TCONS_00031069 mRNA upstream 167276 30904069 ~ 30908300 (+) True XLOC_015541
TCONS_00031083 mRNA downstream 224507 31308587 ~ 31363407 (+) False XLOC_015548
TCONS_00031084 mRNA downstream 246278 31330358 ~ 31364659 (+) False XLOC_015548
TCONS_00031086 mRNA downstream 298510 31382590 ~ 31435158 (+) True XLOC_015550
TCONS_00031087 mRNA downstream 353467 31437547 ~ 31452606 (+) False XLOC_015551
TCONS_00031089 mRNA downstream 370482 31454562 ~ 31457860 (+) True XLOC_015552
TCONS_00031072 other upstream 149272 30916200 ~ 30926304 (+) False XLOC_015542
TCONS_00031070 other upstream 154100 30916188 ~ 30921476 (+) False XLOC_015542
TCONS_00031062 other upstream 242601 30786783 ~ 30832975 (+) False XLOC_015538
TCONS_00031039 other upstream 798514 30276217 ~ 30277062 (+) True XLOC_015524
TCONS_00031038 other upstream 805413 30269306 ~ 30270163 (+) True XLOC_015523
TCONS_00031078 other downstream 17008 31101088 ~ 31101573 (+) True XLOC_015546
TCONS_00031079 other downstream 23849 31107929 ~ 31108414 (+) True XLOC_015547
TCONS_00031082 other downstream 187002 31271082 ~ 31330958 (+) False XLOC_015548
TCONS_00031085 other downstream 246843 31330923 ~ 31345196 (+) True XLOC_015548
TCONS_00031110 other downstream 858379 31942459 ~ 31948455 (+) False XLOC_015565

Expression Profile

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