RNA id: XM_021603541.2


Basic Information

Item Value
RNA id XM_021603541.2
length 4214
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC110524155
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58647160 ~ 58656842 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGAGACTGAAGAGGAAACGAGACACCCCACTCGCTGTTTCAATGAAAGTCAACTAGACCAGACCAAGTTGCTATTACATCCGTGTCTATGGGAGACACACCCAGTTAAGTAGACCGGAACTGACTTTTTTCCCCAATGGTAAATTGCCTGAGTGAACTgtcttcatttatccaccatctttggtaGCTGCTCCACGTCTCACTGCCGGTGAATCCGAACTGGAAGATGGCTGCGGTGGAACGTCCCCCAGTCAAGGAAGGGGTCCGGATAGCTTTACTCTGTTTCTGTTGGTACACTGTTAGTTCGGGAGGTAACGTCGTTAACAAAATTATTCTAAATGGATTCCCTTATCCTGTCACCGTTTCGCTCTTTCATATACTCTCAATCGTCGTCTTCCTTCCTACGTTGTTGAAGGCATGGGGAGTCCCAAAAACAGAAGTGCCAACTATATACTACAAATGGTATATTCTCCCTTTAGCTTTTGGGAAATACTTCGCTTCTGTGTCGGCCCACTTCAGTATATGGAAGGTACCTGTTTCCTACGCACACACTGTCAAAGCCACAATGCCTATATGGGTTGTGTTGTTATCAAGGATTATCATGAAGGAGAAGCAAACCACAAAAGTGTACGTATCTCTCATCCCAATCATCGGAGGAGTGCTTCTGGCCACAATGACAGAGCTGTCCTTTGATGTATCTGGGTTAGTCAGTGCCCTGGCCGCCAcactctgcttctctctgcaAAACATATTTTCCAAAAAGgtgctGCGGGACACGAGGATCCACCACCTGAGACTTCTTAACATACTGGGCTTCAATGCTGTTTTCTTCATGGTGCCTACGTGGGTTCTGGTGGACCTCTCCTCATTCTTGGTTGAGGGGGATTTTACAGGCATGTCTGAATGGAGCGGCACCTTCCTTTTACTCCTCGTCAGCGGCTTCTGTAACTTTGCTCAGAACGTCATCGCCTTCAGCGTCCTCAACTTGGTCAGCCCGCTGAGCTACGCTGTGGCAAACGCCACCAAGAGGATCATGGTCATCAGCATATCACTCCTGATGCTGCGTAACCCGGTCAGCTCCACCAACATCATGGGCATGATGACGGCCATTGTGGGCGTCTTCCTGTACAACAAGGCGAAATATGACGCCAATAAGGAAGCTAAGAAGAAGCTGCTGCCTTCCTCCAAGCAGGACACAATGTCCTTCGACAATTTGGGACTGGACAAGACGCAGCCCAATGGTTCAGTGCCTTTCTCCCAAGGCTCAGACATTCAGTATGGTCGAAGCAACGTGCTGACCGACCACTTCCAGTACAGCCGGCAGGCCTACACGATGAACTACGGCGCCTCCAACCACCAGTATGTGGTTTAGGCTGGTGGATGCCTACATGGATATGCTGTATAAAGAAAGGAAGGCAAGTACTGTCGTATTGGCGGGAGAGGAAAGTATCAATCGTGAGTTGGCCAGCGTTTTGTCCCAATAATGTTCTCCTAACATATTTTCTTCACCTCTGcgtgtttttatttgttttgataTGAACACTTAAAGATAGTTCAGTCCAAATCAGTTtttttcagatgttttcaaaCCTTAAAAGTAATCTGACATTGATATAAGCCCACATCAACTCTTGTAGATCAAGCTGTATGTCTCAATCATGAGTGAATGAGAAAGATTGGCACCATCTAATTTCATAATGTTTTGTGGTGTCAATATTTCTAGTTAATTTGGGATTGAGGGATACCATTGCATCTACACAACAGATGGCTTGGAACATGGACTCATCTGACAAATGTTGATTTTGGAGTGAAGTTAAAGATGCAGTACAGGATCTGAAGCACATATTATACGAATTGGAAAAGTTTTTTTTGCaggatgtaacatatcatacgaaatagGTGACGTAGTGCACAATTTACGAGGACGCATTTTGGCTCGTGATCACTACTTTCAAAACGCCTGTCTGAAATTTGCTTGCTGAGGAGCGGATGTTGCTGTATTCTTTTTACTGTGGAAGCTTGCTAATGCGGTAATAATTGTTACCGTAGCCACAATGGCATAGGTCCAAATAAATTGAACAGAACTTTTACTCCAAATCAAAGAACATGAAATGTTTTGAGTAATGCTTTGAATCAGGCTTGCACTCAGTTATATTGACCCCAATTTTATCAGAGAAGACCTGCTCATTTTACACTGTTTTGTGTTTTTGCTGGGATTGGCAACATTTTGGTCCTATACATGTAAAAACATTTGCCCAGAAGACATTTTTCTTTTTGGTCTTTAACTAGTGATGGAGGCATGgcatgaaaatgtatgtaaacgaTCGTAGTTACAGATAAATTGAGAATCTTTCATTCTGTGGTTCCAAATTTACATTTGAGTTATTGAATCAATTCGTATCTGGTCTGGTAAAAGCTTTGTAGTATGGGGTTACATGGGTCAAGTATCTGAGATGCACCTAGTTTTATGTGGCAGACCTACTTGGATCAGGTATAGAAGTCAGTAGACTCCACATGCTTTTGCCGGTTTGTCATTCTTCTTCCCAATATTCACACTTTAAATTGTCTGAGATTGAGGAATAGTAATTTAGCCTACAGGGAACGAGCTGTTTTTCAAAGCCGATGTGGAGCACCTGAACTAGTTAACTGGTTAAGGTTTGCAcattgtaaaaaaaagaaaaagaacgATGTGACAGAGAGACTGTGACTAACTCTTGTGTGGAAGCTCTATTCTAGTGTACAGCTGGAGAACGGATGGTAATAATGTTGTTAACCCCATTAACTTAAACGTTATACTTGTTGAATATAAAATTCATATTCTTCTAGTCTACATTTTTCATTTTGAGTTTGCTTGTTTCAATTTGTTGCATAACATTCCAGCATTGTAAGTGGACAATTTCTTTGCCGTTTCCTAACTGCAGGGATGTTCGCTCTGAATGTATTTATTGCATGTCTAGTGACTCTATTGTATATTGGGCAGCAACAAACTACTATTTTGGGCAGCAACACATTTTTGCTGTTTACCATCAATACAAATAATAGCATTTATTTGGATATCTTCTCCTATGGTATGTACTGAATAGCACATAGTTCTGGTTGGCTGCACAGAGATGATCCAGGTGGATTTACACATTTGTAGAACTGTGTATGTATGAGCTTGTGTGGAATTCTCAGGTAGTTCCAAGCTTATTTCATATTCCATTTAGTGAAGCTCCCGTATCATTTGGTTCAGTAGGTTTGTTCTGGTTACGTGATGAAATTCATACTGGCGTGGTGATTAGGCTATTGAGATTTTAGTACATGTGATTCACTTATGCCTGTTATCTGCATGTCCTCATGACTTAGAGTTTTGAATTTACCTGTCTATTGGATGGTGTTACAAAGTAAACAATCATTTGTAGAAATCCAATGACAGTGGATAACTTCAATATTAGGGTTTGATTTCACCTTGGCTTATAAAGTATGGAAGATCAAATGTTGGAGCCATGATTGAATTCTACTAAATCTCATTTGTCACCTTTAACATGTAAAATTTGAGCCCATTGTATTATTTTGCgacccatttttatttttttattactgTGCTGACATTCTGTTAAACTGTCTCAAGCTTTCCTCTTAAATCTATGGTTGAGTTTGTCACGTCCTGATGCGAGATGCCAAATGAAAGAAGCTACGTGGCTCAAGTCAATATTTATTGGTCGCTTACACACTTATCGCAGGTGCagggaaatgcttatgtttctgcctccaacaatgcagcaatatctagcaatacaataacaaaacacacatacacccccgAAGGATTTTGACTGCTCTTTATGAGGCTTGTGTGATGCAGTAGCACGGAATGATGGAATCTGATGTATATGTTTAATGTAAAGCCTAATATTTGACTGTACAGTAGGCTAAATAACATTTTGAAGAGAAACTATTTTCATTAAATCTGGGATGGCATTTGAGGTTATGACGTTATTTACTGGAATGTACATTTGACTGTGTGGGGGTTTGCTTTGTAAAAGTTGTATAAATGACATTTTTCCTGCTTTAAAGGATCttgaaaaacagattttttttttactgaaccAATGTTTATAGATTTTTATTTATGGTGTCTAGGTACAGAAAAGTGTACATAAGTGCAACCATGCACAGTCTTGTCTGCTTACGTTTTTagatgtaaaaataaataaatgcattgTGAAATGAA

Function

GO: NA

KEGG:

id description
K15283 SLC35E1; solute carrier family 35, member E1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476567 lncRNA upstream 3629 58620615 ~ 58643531 (+) True LOC110524153
TU476550 lncRNA upstream 26972 58619577 ~ 58620188 (+) True LOC110524154
TU476549 lncRNA upstream 27128 58619351 ~ 58620032 (+) False LOC110524154
TU476548 lncRNA upstream 27128 58619469 ~ 58620032 (+) False LOC110524154
TU476547 lncRNA upstream 27128 58619577 ~ 58620032 (+) False LOC110524154
TU476583 lncRNA downstream 12674 58669516 ~ 58669975 (+) True LOC110524159
TU476603 lncRNA downstream 22744 58679586 ~ 58679864 (+) True G420545
TU476665 lncRNA downstream 146052 58802894 ~ 58803093 (+) True G420606
TU476667 lncRNA downstream 147140 58803982 ~ 58804208 (+) True G420608
TU476669 lncRNA downstream 148237 58805079 ~ 58805298 (+) True G420610
XM_021603538.2 mRNA upstream 1050 58620518 ~ 58646110 (+) False LOC110524153
XM_021603539.2 mRNA upstream 1050 58620518 ~ 58646110 (+) False LOC110524153
XR_005051801.1 mRNA upstream 27127 58579542 ~ 58620033 (+) False LOC110524154
XR_002473549.2 mRNA downstream 5068 58661910 ~ 58669974 (+) False LOC110524159
XM_021603542.2 mRNA downstream 17416 58674258 ~ 58699892 (+) False LOC110524157
XM_021603544.2 mRNA downstream 32750 58689592 ~ 58699892 (+) False LOC110524157
XM_036977965.1 mRNA downstream 33194 58690036 ~ 58699892 (+) True LOC110524157
XM_021603546.2 mRNA downstream 43153 58699995 ~ 58710980 (+) False LOC110524161
TU476101 other upstream 230384 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 747512 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1279823 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 1688995 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 1721984 56923924 ~ 56925176 (+) True G418251
TU476694 other downstream 285886 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 2037415 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 3064695 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3448681 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 3626310 62283152 ~ 62306937 (+) False LOC110524265

Expression Profile