RNA id: XR_002473549.2


Basic Information

Item Value
RNA id XR_002473549.2
length 1961
RNA type mRNA
GC content 0.36
exon number 3
gene id LOC110524159
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58661910 ~ 58669975 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaccttagctttcttgggaacaggaacaatggtggccctcttgaagcatgtgggaacagcagactgggatggggattgattgaatatgtccgtaaacacttgTTCAATGACAAAGTTGAATCTAATCTAAATTTGTAAAACATGGTATATATTGTTGTAATCAATGACTGTGAGGACATTGGGAGGAAACTTCTTCAAAGGGAATCTTTCTGGATCCACAGGGTCAACACACTGTCTCCTCTTGGCCTTAACGAGGAGTTTGACTTGAAATAGTTTTTATAGTTTcaaaattattttatattttaaaatCCTAATTGAatattgtatgtgtatgtatattactgtaaatattAATCAAATTTATTGTGTATGATCATatattgtgatacattgaatgttAATATTGTGTACCTATGTTATACATTTTTACTTTCTGTTTCAGGAAGTACTGCccctatatatactatatatgtcACTGAGGACTGCCCCTATATATAGAACCTTCCACCCCcacctgggatatggatgcctgaTAAAGACATAAGGGTCAAAGCGTTGTtataaatatcacctgggagcatgagcagcagtgtgttgagttttcctttctgttttcctTTTGCATATGGTTGTAACCCACTATTATTTTGGGCTGAGTCCTTCAATGATTTCCGTTGGGAATCGTTTATGCCTATTGCCACTAGCCCTCCCCTTAACAACACTCGAAGAAGACATCTGTGACAACCCTAatcatttctcctcctgtctcctctttctttgttctgttagacaggtatgTGGTGTACACAAGCATAATATCTATAGAACATCTTAGAGTAAATGGTTGTCTGAGTGATACTTAGCTTTTATTATTGAAATTGTAAAGTTTAAATGTGTAAATTGATTGAGTGAAACCGTTAGCGATCTTGACATAGAGATGACTGTGCTAAGCTAGGCTAGCCCATCGAATAACACAATAAGAAATGTCGGCAGCTAATATTCTGGTTTTAACTTATTGATTCATAGGTGAGGTAATATTGTGGTTTCTTTTCTACTCCGTTTATATTTTCTAGGCGCTGACATCTCCCCATTTGTTTAGAAAAACTGTATACGCTAACGCTCAGCTAACTGCTCTAATGCTAGCCTGTCAAGCCTATAGGGTTGCTATGAGCTTAGCAGCTACCGTTACCTGGCTCAGTATAGAGATGATTGCACTGGTTTATGGTTAATTTAGCTATAAAGGTTCAAATAGGCTTCCttatgtgtgtatttatttatattgaaACAGTACATGATTGTTAACTTTTATATCATCTGAGGTTAAGATAAATACTGAGAAGGTATATTTTTAAATGCAAGTCAAGGTATTAGCTAGCGGAATTGTTTTAAATACAGAGAATGTACTATGTTACTGTACTTACAGTACTTTCTAGTCTTTTACAGCATCTGAATGAATTATTCATGTTTTGCAGATCGAAATTCACCCAGGCTCAAACATTACAGTGGGCGACCATGCAAACAGGCCAACTGCGATGGCAAGAGAGCTGTGGTTTTGATGTTGACATGTTGCTGAATAACAACCTGAAATGTGGCAAAACTAAAAGGGGAGAAAAAAACCGATCCTGAAAAAAATGCTGGCAAGAGTGCTTTCCGGGTGTAACAAAGAGACAAGTGGGAACGGCTTGCAACAGTAAAATGGCTGAATTAAGAAGTGATGAGAGAAAAGCATTTAATGAATAGGATGAAATTAAGtttttattgttttgtgtttgttctAATGTTTTATTACCATGGCTACAAGTACTATGACTACAAGTATCACTGAAATAATGCAGGTATTGTGACATAAGGGacatatacagtgtcttcagaaagtattcacaccccttgactttttccacattttattgtgttacaaagtgggattaaaatggatttaattgtcatttttttgtcaacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476567 lncRNA upstream 18379 58620615 ~ 58643531 (+) True LOC110524153
TU476550 lncRNA upstream 41722 58619577 ~ 58620188 (+) True LOC110524154
TU476549 lncRNA upstream 41878 58619351 ~ 58620032 (+) False LOC110524154
TU476603 lncRNA downstream 9612 58679586 ~ 58679864 (+) True G420545
TU476665 lncRNA downstream 132920 58802894 ~ 58803093 (+) True G420606
TU476667 lncRNA downstream 134008 58803982 ~ 58804208 (+) True G420608
TU476669 lncRNA downstream 135105 58805079 ~ 58805298 (+) True G420610
TU476680 lncRNA downstream 161414 58831388 ~ 58831587 (+) True G420621
XM_021603541.2 mRNA upstream 5068 58647160 ~ 58656842 (+) True LOC110524155
XM_021603538.2 mRNA upstream 15800 58620518 ~ 58646110 (+) False LOC110524153
XM_021603539.2 mRNA upstream 15800 58620518 ~ 58646110 (+) False LOC110524153
XR_005051806.1 mRNA upstream 41877 58579542 ~ 58620033 (+) False LOC110524154
XM_021603542.2 mRNA downstream 4284 58674258 ~ 58699892 (+) False LOC110524157
XM_021603544.2 mRNA downstream 19618 58689592 ~ 58699892 (+) False LOC110524157
XM_036977965.1 mRNA downstream 20062 58690036 ~ 58699892 (+) True LOC110524157
XM_021603546.2 mRNA downstream 30021 58699995 ~ 58710980 (+) False LOC110524161
XM_036977964.1 mRNA downstream 30529 58700503 ~ 58710980 (+) False LOC110524161
TU476101 other upstream 245134 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 762262 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1294573 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 1703745 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 1736734 56923924 ~ 56925176 (+) True G418251
TU476694 other downstream 272754 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 2024283 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 3051563 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3435549 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 3613178 62283152 ~ 62306937 (+) False LOC110524265

Expression Profile