RNA id: XM_021603545.2


Basic Information

Item Value
RNA id XM_021603545.2
length 4367
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110524158
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58671471 ~ 58675928 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttctcagaacgttatgtgttaGCTGGGTATTTTAGGCGAAAATCATATTTTAATGAGAGTCACAGCTGAAGCATTCATCACATTATGTTTCTGTCATACAAGTATTTTTTTTCCAGTTAAAAGGAGAAAGTGTTCTGAGGTGAATTTGAAAATGTTTGGGCTGTTTATGAATTCCACTGGGTGCATAGATCAGGTGTGTAGGAGCCACACGATTTGACCCACAGTGTGGTACCCAGCTTTTTAATACTTGAGTGAGCAGTATACAAAAGGCCAACTTGAGTGCTATGGCTAGGCCTGCCACTTTCGTGTATTGCTGATATAAACTGTATATAAGAGGAGGCCAGTTGTGTGCCAGTGAAGTCATCCCTCTCAGAGGTGTTGTATTCTTTTTTTTAACAAGTGTTTGAGACATTCACCCTTGGTCATGGGGCCCCATCTAAACACATAATTAGTCATCCAATAATGGAGAAGTGGCATGGGAGAGAGACGGCACTAAGTGCACTGGCATCGTTCACGTTGTCTCCTTCCATCATAGATGTCACTTCACTACCATTTACAGTCATCTTTGGTTGAGGTGCACAGCTGAGACTCAGGCTTTGTATAAACTGTGTTCATGTTACTGGGCAGCTACCATGACAAAGCTAAGTGACGAGTCTTACCACTGACTTTGTGAGTTTTTAGGTTTTTTTGGATAGTTAGTTATTCATTTAATTTGGAAGTTGCGACATTTGAATGGATAAAACCAAGAGAACAACTCCTTTCAATAAATAATTTATGAGATAAATTAAATCACAAATAAATCACATCatttgtgagaaaaaaaatcaacaagCTCATGATGCTGGCTGGGGGGAAGCCTAAAGGTTTTTCTCGAGAACTTAGTTAATACTGACGCAGAGTGGCACTGGAAATTGCGCAGGTTTTTGGGGAGTCAAGTGACAACTGTTAGTGATGATGGGACATAAAAATGATACAGTGTTCTTTcttaccatccatctacagtctGGGTTTTGCTGATGAGACGTTGACATCTTGCTTGCTTGCTGTGAGTCGAGAGAGCATTTTCATGTTTTTCCATCCACTGGACATTTGGCGAGGTTGAGGACAATTTAAGCTATTGGACAACAGCAAACATGAAACGTGGAATTTACAAGACAAACATCTGTCGCAGTGTCTGCTTGGATTTGAATGGATTTATGAAGTAGCCTAAAGAACGGCTATCTAAAAAAGAACAAATAGCGTGCATTTGATAGCCTACTTCTGGATTGGAAACATGAACGATACACGTAATTCATCTACACATACGTTGCCTGACAAGACAGCTGAAGCGATGGCTGTACCGGTATTAATGTTTGCAGTTGGTGTCATTGGAAATATAATAGCAATAGCCGCTCTTTCTGGATCCAAGCAGGAGCGCAAATCCTCCGCGTTCTTCGCCCTAGTTTGTGGTTTGGCTGTGACGGATCTGCTTGGGACTTGTTTGGCCAGCCCAATCACTATAGCAACTTACctcaatgaaaatgtgttatatGATAATACTAACCTTTGTGAATTCCATTCCTTTTTGTTGCTGTTCTTCGGAGTGGCTGGGCTAAGTATCATATGCGCAATGTCTGCTGAGCGCTACCTCGCGATATGCTGCCCTTACACTTACCAAAGATGGGGAATTGACCAACATTTTGCACGCAAGTGCTTGTTTTGCATTTATCTCAGCAACATTGCGTTTTGTTGTCTCCCAGTGATGGGTATGGCTGGAAGCATTTGTCAGCCCTCCAAAACGTGGTGCTTCATCAACTGGAGGGCTGATAAGACACTGCCTGCAACATATTCGTTTTTATATGCCAGTGTGAGTTTTTTACTGATATTGATGACGATAGTACTCAACTTTGCAGTTTGTGGCAATCTGTTGATAATGCGTCGCAGGAAAATCCAAAGTCCAGTTACAAGAGGGAGCGCACGGGCGCGCTGGAAAGCGCTTTCCTCCGGCGTGGAAGCGCAAATGATGACGGTGCTCATGGTGACCTCCGTGGTTGTTTTAGGTTGCTCAGCGCCGCTGGTGGTACGCGTATTTTCTAACCAGATAACATGGACCGAGAATTCCCATGCAGATTTGATGGCTATTCGGATCGCCTCGGTCAACGCCATTCTTGACCCTTGGATCTACATCCTCCTGAGAAGGACTTTGTTCCGTAAGATTCAGAGATTCTCTAAAGTGTTTTACATTGGTCGCAAAAGCAAAGCACCCATGTTGCCAGTAAAATCATCACAAAGGACATTCCACTACCAAGGAGACATTACAAACACCCATGTATTCACACCTCTGTGAAGCTCCTTGCATAAAAAACATAATTCACCTGCCCGCCACAGTCGCCTAGTGCGCTCACGTCACCCAGGTTGGGACAAAGCTTGCCATTTCTCCCCACAAGTTGTCCGATATCCAGTCTCACAATGTGTTCTGTCGATATAATTGATGATGGGTGGCAATTCACCTGTTTtaaatatataactttcaaaaACAGTAGATGAATTAAacaaattaatcatgtaacagtAAAATTATAGATAGTACCATGGGCTCAAGCATTTGGCTCAATCACAGCTATGTATACGTTTTACACAAACAATAAATATGACATTGTGAAGTTAAAGAGATCCGTTGTATGAACACCAGGTGTGTTTAGTGCTGCTAACCAATTCAGACGTTTTAAGTTCATTGGTAATATCAATGAGCAAAGAGTGGGTCTACGGAATGATTAGGTTTTGAGTCTGTTTAGTGTTGGCCTGAGATGACCCCTTGTTTTTCCCCATCGTGGCCACAGAGAGGTTGTTCATTACTtggttaaaggtccaatgcagccgttttttaTCACAATACCAAATAATTTCCggataacaattaagtacctcactgtgattgttttgaattaaaatggtcaaaaattaACAAAtaacttcttagcaaagagcaattctTCAAGCAAGAATTATGCTAGGACTCTCTGGGATTGGTCTGAGCGGGAAGGCTCAAACGGAAAACTAGCTATTGGCAGAAAGGTTTCGAACTCTCTTCCTTATTGGTCTatttggtgatgtcaccaggcagaccAAAATTGCATCCCACCCACacaggcagaaatttcaggcGGCCTTtgaaaacagctcttacactaaaagggcattaaacataattttcacaattttacagtattattccaaccttatagtgtggaaatatatataaaacacacaaaaaatctAGTTTTTGTTTGCACTGAGCCTCTAACCAAGACCCTTGTTGATAGAGTCACTTTGTCATCACCCTTAGCGGTGTTGGCAGAAAGCGGATGTTGCAAGATCAGGGATACTTCTCTTTCCCCTGAAAAACGGAAGTGGGGACTTCACTTAAATATGGTTTTTAACAGAGGTGGCGCCTCCCCTTCACAACGAATCACGCCAATACTTTTCTTTTCTTGAAACTTGCATAAAGTAGAGCTCAACTTTTTCTACCGCTCTGCTAGCAGGGTTCTCGCTGCTCACCTTCCCACAATCTCCCTCACATTTCTCTGTGTTCCCTCATTGAAAATGAAAAGGGGGAAAAACTTATCCTGCCGAATTCGTTGTTGGTGAAAACCCACTGTCAGGCGTCATTCTATCCCTGTTATGTTAGGTTACTGTGCCATAGACCCCTGAGGGGCTAATGGATCAAGCTCAAAGGCAGTTAATGCACAAGATGTAGTTTAATCTCCCGGATCTACTCTGTACCCTGAAGGGGCAACAAACGCAAAGTAACAGACATTTCACATCAGACACTTTGGTGTCTCTTCTGCAGAGTTGTAAACAACCTCAGAGGAGCAGGATGTGTCCAAGTGTTTTTCTCAAAACTTTGGACTGAATTCTAAACACTGTCCAGCAACTATACTTGCGACTGCAGTTACTCTCAAAAAACAGGCGTTGAACTTTGTCATGGAGGTCATGGGAGAGAGACTTCCCAGGGAGATGATTAGTTCCCCTAGGTTGTGTTCCTATTTTCTACCCTTCACCCAGaaatgtgcacttgttcacttccacTCATGCATTTAAAAGTATTGGATTGGTGAAAGCGGCTGGAGGGACTTTCCACCTGTTCCTTTTAAAGGAATGTACTGGcacaaatcaacgtttattggtcacgtacatacacagtttagcagatgttatagcagtTGCAGTGAAATaattatgttactagctcctaacatgcagtaaaatgtcaaacaagtatCCAAATAATTTAAATATTCGTAAAAaagtacagcaaaaaaaaaaaaacgttggtAAGAATCCAATTAAtaacccaaatagcactgtaacagtaatcAAAATGCAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476921 lncRNA downstream 874 58670050 ~ 58670597 (-) True G420837
TU476917 lncRNA downstream 6512 58664692 ~ 58664959 (-) True G420833
TU476916 lncRNA downstream 6814 58664438 ~ 58664657 (-) True G420832
TU476912 lncRNA downstream 11929 58659278 ~ 58659542 (-) True G420828
TU476909 lncRNA downstream 14064 58657114 ~ 58657407 (-) True G420825
TU476927 lncRNA upstream 7978 58683906 ~ 58684177 (-) True G420843
TU476928 lncRNA upstream 9651 58685579 ~ 58685920 (-) True G420844
TU476930 lncRNA upstream 12634 58688562 ~ 58688785 (-) True G420846
TU476931 lncRNA upstream 13008 58688936 ~ 58689211 (-) True G420847
TU476935 lncRNA upstream 16289 58692217 ~ 58694635 (-) True G420850
XM_021603537.2 mRNA downstream 92860 58573258 ~ 58578611 (-) True LOC110524152
XM_021603536.2 mRNA downstream 103788 58546384 ~ 58567683 (-) False LOC110524151
XM_036977961.1 mRNA downstream 103788 58546384 ~ 58567683 (-) True LOC110524151
XM_036977962.1 mRNA downstream 109083 58546384 ~ 58562388 (-) False LOC110524151
XM_021603518.2 mRNA downstream 196238 58416872 ~ 58475233 (-) False mast3b
XR_005051820.1 mRNA upstream 158334 58834262 ~ 58836111 (-) True LOC110524167
XM_021603553.2 mRNA upstream 176091 58852019 ~ 58856447 (-) True gamt
XR_005051821.1 mRNA upstream 306760 58982688 ~ 59001580 (-) True LOC118964628
trnaa-ugc-13 mRNA upstream 350598 59026526 ~ 59026598 (-) True trnaa-ugc-13
XM_021603568.2 mRNA upstream 379192 59055120 ~ 59115105 (-) False atp13a3
TU476443 other downstream 257328 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 557411 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 965535 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 1045297 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 1059904 57611059 ~ 57611567 (-) True G419603
TU477090 other upstream 350175 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 456942 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1424837 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2383066 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 2940942 61616870 ~ 61617244 (-) True G424474

Expression Profile