RNA id: XM_021603544.2


Basic Information

Item Value
RNA id XM_021603544.2
length 2706
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC110524157
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58674258 ~ 58699892 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaagaAATTTAAGAATGAGGCtgttatgtaacaaaatgtggaaaaagtcaaggggtctgaatactttctgaaggcactgtaaatgctgTATACTCTGTGTATGTGTAATATGGGAGATGGGCTTCAATATTCCAATGTGTTTTTCAGCTGACCACCTGACATTTTCATTCTATTTAATACATGGTAAGACTGGCTTAGCATTGCTACACCAGTTTAGCCCTTATGACCTTTCGATTGTTACTTCTTTCATTACTGATGTCAATATCACCTGAGAGATTATGCTGTTGGTGGGAATTACAGCAACTCCGTTATAGAGTTCCAAAGTATTTTATTGCAACGCCAGCGGATGTTAATACATCACCAGTGAGGCATCTTTCTGACCTTTGGCTCCAAGACATTTCACACGGCTTTGAGGCTCGAGTCGAGCCAAAGAGTAGAAAGGAACAACATCCTTAGCAGTTGCAAGCAGCACAtcattatggagacagaccaagAGGCTTGCAAGGCAGCTGCGAGCTGTCCAGCTCCAAGCCAAGGACCCGTCAAGACTGGCTGGCTGTCCTCCAACAAGAGGGGCCCCCCAGTAACCAAGCCTCCATCTGATGGGACCTCTCGTTTCCAAGGAGACGGAGTTCGCTATAAGGCCAAGCTGATTGGCGTGGACTACGTCCCAGCAGCCCAGGGAGACAAGATGTGTTTGGACTCCATGATGAAACTCAAGGGCCAGGAGGTGGCAGGCAGGAGCCAGGGACGACACAAGCAGAGGGTGTGGCTGAAGGTGTCCATTACTGGTGTGAAAATCTTAGATGAGAGGACTGGGGTTGTGGAGTATGACCACGAGAGGGGGAAGATAAACTCCCTGACAAAGGATGAGTCAGACCCTAGAGCCCTCTCCTACATCTACGATCATGAAGGCACCTACACTCTGTTCTACATCAAGATGGCCAATTTGGCTGACCCTGTCCTTGATGATATCAAAGAAGTCTGCCAAAGCCCAGTAACACAAGAGGACCAAGAGGTCAATAAACCAGTAGAGAATGCTGTCGCCTTACTGCTTCTTGATGAGAATATAGCTTCTCCAAAGGGCCTGGATGACTTGGAAATGTTAAATTCCATGCCTAGCTCTCCGTCAGGGCAACCAAAGCAGATCTCATCCAGGGACGAGCTGATGGACATCTTCTCTTTCCCCAGTCAAAACTCTGCCATGAATCAACCAGGATCTCCAAAGTCTCTGTCAGTTCCTCAGATATTTCCCACCTTCCCTGGTCAGCCGATCGCTGTTGCATCATTCATCTCACCTCCTGTTTCAATACCTTGGTGTCAGCAAGGGCCCCTCCCAACTCTCTCACCCAGTTCAAATGGATCCTGGGGGGCTCCTGCCCCCTGGCCTTCCCAGCCCAACATGACTGGATGGATCCCGGGGTCGGGTGGCATGATGCCCTATGGAGGCCCCCAGCTGCAGGGGTACGGAGTGAACCCACAGCCAGGGGTTATGTGGGGTCAGAACACAATGAGCTTTCCCACCTCTGCCCCAAACTACACACCCTACAGGGCAGAGGGACTCCAGCAGCAGCCCGGCTCTCCTACCACCAACAACAAACCAGCCCAAGGATGAACTGGCTTAGAGAGCCAATGAAATGTCCCTGTTGTCTTCATGTCTGTATGCTTGGCATTGTCAGGGTCGGATTACAGAATGGGCACGCAGGGCACGACCTTCTATGCCCCCTGATGTTCCGGGGTCCCCAGATAACATATTAtaccaaaatgtgtagaattacagaaaatgtgctttaaaactgcaaccttTTCTCtccgcctcatggcaaaatgtgaacaATGGCATGAGATGAGCTGTAAAACAGAACATTCTTCTCTCTGACCCATGGCAaaaagtgtagaattgcaggaaattaactttacaACTGCAAGATTTTCTCATAGCCTCATAACACAAGGTAtaaaatagcattataaaactaCACATTTTTTAAGGAAGTTAGCAGTTTTcctattaaaaaaaatatctggATACCCAAAATGCAGTAGTCCGGCCCTGTGCGTTGTCTTTCAGTACTTAGTAGTGCCTTTTCCATATGTATGTATTCCGTATTCCATTCCGTATGTATGAATCTGTTTACTAGGGTGCAGTTCTACATTGCTTTTGATAATGTACATTTGTGAATTTGAGCTCAACAGCAATTATATCTGTAGATTGTTCAGTAGACTTTACTTTTTTTGACAGGATCATTTAGATGAAGAAGTAAGACGAAAATTAAATTCAAATGCTGTAGTTTTTGAGGGATCTCACAGAGCTGAACTTGTTTACAATTCTGAGAATTCACATGAAAGACAAATTTgacattattttaaaatgtatttctccaTCTATGTAAACAAGATAAAGTGGTTATGTTTTTGTTCTAGAAAGTGAATTCCATGCATGCTGTGGGTCTCATGATGGGATTAGTGTTCATAAATCATGTTTGTGTAGATATTTAAATCAAGTAATGAGGTTTGAATAGATTTGAGTATCTCAGCTCCATTTTGGATTAAATGGGTATTAGGCCTACTGATAATgtaaagagaaaaaaaagtacTCGTTTTTCAAGAGGGACATACACTTTGTAATGGTAATCATATCAAAAGTCATGGAAATAAATTGTGTCATGGATTTCATAATAAAAATGCATATTTTACGGTAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476603 lncRNA upstream 9728 58679586 ~ 58679864 (+) True G420545
TU476583 lncRNA upstream 19617 58669516 ~ 58669975 (+) True LOC110524159
TU476567 lncRNA upstream 46061 58620615 ~ 58643531 (+) True LOC110524153
TU476550 lncRNA upstream 69404 58619577 ~ 58620188 (+) True LOC110524154
TU476548 lncRNA upstream 69560 58619469 ~ 58620032 (+) False LOC110524154
TU476665 lncRNA downstream 103002 58802894 ~ 58803093 (+) True G420606
TU476667 lncRNA downstream 104090 58803982 ~ 58804208 (+) True G420608
TU476669 lncRNA downstream 105187 58805079 ~ 58805298 (+) True G420610
TU476680 lncRNA downstream 131496 58831388 ~ 58831587 (+) True G420621
TU476681 lncRNA downstream 132499 58832391 ~ 58832640 (+) True G420622
XR_002473549.2 mRNA upstream 19618 58661910 ~ 58669974 (+) False LOC110524159
XM_021603541.2 mRNA upstream 32750 58647160 ~ 58656842 (+) True LOC110524155
XM_021603538.2 mRNA upstream 43482 58620518 ~ 58646110 (+) False LOC110524153
XM_021603539.2 mRNA upstream 43482 58620518 ~ 58646110 (+) False LOC110524153
XR_005051818.1 mRNA upstream 104180 58579544 ~ 58585412 (+) False LOC110524154
XM_021603546.2 mRNA downstream 103 58699995 ~ 58710980 (+) False LOC110524161
XM_036977964.1 mRNA downstream 611 58700503 ~ 58710980 (+) False LOC110524161
XM_021603547.2 mRNA downstream 5010 58704902 ~ 58710980 (+) True LOC110524161
XM_021603548.2 mRNA downstream 26639 58726531 ~ 58735992 (+) False LOC110524162
XM_036977966.1 mRNA downstream 26639 58726531 ~ 58735992 (+) False LOC110524162
TU476101 other upstream 272816 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 789944 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1322255 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 1731427 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 1764416 56923924 ~ 56925176 (+) True G418251
TU476694 other downstream 242836 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 1994365 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 3021645 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3405631 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 3583260 62283152 ~ 62306937 (+) False LOC110524265

Expression Profile