RNA id: XM_021603552.2


Basic Information

Item Value
RNA id XM_021603552.2
length 3238
RNA type mRNA
GC content 0.41
exon number 11
gene id LOC110524164
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58808570 ~ 58828505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAACACAGAGGCGCAACATCGCAAGACTTCCGGGAACGCTTGTAAAACAACAAGCAGACCAGGTCAGGGTTTGGAgattgagaagtcaatgagagaagtgaacaaTTCTTCCTTAATTTTCTAGAAAtgtaaaggcacaacctagattcgagccaatgccttaagtagttgaacatgttaatACTCCAATCTAATTTttgtcaaaaatatattttatatcgaCAGAGTGCCTTTGATTTTCCGGCCTTTACATGCACAGTTGGGCGAGAGACGACCGTTAGACCCGATAACATATTCTGCGCGTGAGTTTAGATAACCAACATCGCCTACAAACGTGATCGGGGATTTATATcggagaagcagtttctgcctatctTCCTACTGTACTCTCTTTGTGTGAACCTTTCcggtagataaaaaaaaaaaaaaaaatacggcACAAGAACGAATTGGAGACGACAGACAATCACAAACAGGAACTGGTTTTTCCTATCGACATTTTGAGTAGGCACATGATTATTTTCACGAGCTGTATAACGAGTAATGTTTGTGTAGCTACACAACACATTTCAGTTCATGAAGATGAAACTTCGGTCTCGAAGTATTGCTGACCCTTCATCAGCACGGTTTAATGGTCGGTGGAACTCAAAGAGAGAGGCGCGGAACGTAACTCAAAAGGATGAAGAGGTACAACAGCTATACGACCAGTCACTCTACTCTGATGATATCCCCACCTCTACAAAGCGCCCTCTTGTACAAGGGCGTGGGAGGAAAAGGGTGGCAGCCCCAGACTATGAAGAAAGAGAAGATCTGGACTTCAAGACCCCCGTTAATGTGCGCCATCACCGGGTGTTGTCGGAGCTAAACCCCTCCTTTCCCCTCAATTCCACTGTGCGAAATATTTACTCCCCCGTTGTCCGTTTCCTCACTCCTACCAAGGAAAATGTGAGAACCCCCAGCAGTGGTGATGTGATGAGCCCAGAGCAGTGTGTGTTTGGCTATGGTTCCATTAGCCTTCTCGCTGGAGATGAGGACTGCAATGACACTTTCAGCCCCTTCTCTTTCATGAAGAACATTCCATCCAAGTGCCAGCAATCCAAACCCTGCATAAGAGACATTCCACCTAAGACGAGGAGTACTCCCCAAGCTACGCTAGTTTTAGATCTGGATGAAACACTCATGTACAGCTCTCTGAATGTGATTGAGGATGCAGAGTATACCTTCCGCACATGTTTCCAGGACAATCCGTACAAGGTCTACGTGATTCTACGACCACATGTGAAAGAATTTCTGGAAGCCATGACCAAACATTTTGAGaTGTTTGTTTATACATCTGCGAAGAAAGAATATGCAGAGAAAATCCTGGACATCTTGGACCCAAAGAGAATGCTTTTTCGACACCGTTTGTATCAACAGAACTGTACCTGTGTTCTGGGGCACTATGTCAAGGACTTGGGTGTACTTGAGAGGGACCTTGCTAAGACAGTGGTTTTGGACAACGCTCCACACACGTACCCCTACCATCTGATGAATGTGCTTCCCATCAAAAGCTGGTCTGGAAATGACGATGACAAAGAACTTCAGAAGCTCATCCCATGTCTTGAGAGACTGTCAGGAGCAGATGATTTCCGGGAAGTACTGAAGAGGAGGACGGACCACTTTCACAGATTGCTCTCTGAGGATTGAGAAAAGGCTTCTGATCATCCTTATCCTGGAATGTGTTTAATTGTGAACATGAACTGGATCTTTGTGTACTATCCTTGCCCTTCTGTATGATCCCTGTTAATTTCAAACATGTACAGTTGGGATAAGTTTCCACACTATCACTCTGCAGAGCAAAACATTCCTAATAGTTAGAAAAAAATAAAACCACTTGAAATAGCAACTTCAAATGTTTATACTTAATCATACTAATTTATTGACAGAAAATAGCTTTTTAAAAGTGATCTACATATTGTCACTAAAATAATCAGAGTATGTATCACCTCAACAGCCAGAGCAGTTTCTGTAACTAACAAACAACTTGAACCATAATGgtatttttcagcttttatttgagAAATGTCATGATTTAGTTTTCTGTTTGGATAATTCTGGGAATTTTTACGCGCATATCGTCTCCCTTTGAGTGCCTTTTTTAGTAGGCCCACACTGCAGAAATGTCACGCATCTACTCCCAACATATTACGTTCATGGTTAGCctatttgatttgttttttttgtacTAATCTGTGAAATGTATATTTATATGGAATTCTGACAATGTATTGACCTGGAAATATTAATTTTAAGAACTAACTTGTCAAACTTGAACATATCCCCATCCCTCCTTTCAACAGACGGTCTTGCCAAAGCTAATGTGAAATTCTACTCCGTTTCCCCCCACATGCGGTTAGAACCCAAAGACGGCTATTGTTGGTTTCCCTATTCTCTTACCTTAAGTTTCAACATACTTCACAAATCGGTCGCTCAGGGGTTGGCACATGGTCACTTTTCTGTCGACACAAAGGTCAGGGTAGGTTCATTTCAGAATGTCTTGGAAACCTACATGCttgcaaataaaaaaataaagttgAAGTAACTGATTTGTTTTTAAATCTCTGGGTGGACCGGTGTGCATGAcataatgtttttatttgattgatCACCTGCTGGTGACTTTCTATTAAGATAGAAGTCAGATTTGTTTTCGATCTGGACACAACAGAGCCCCCAAACCCCCTGGTGTATAGGCTACGCTTTTGATGTATTTGCTCCATATGGTCTGTGTGACATGGTACGGAGAAAAGTGTATGTGTGGCATCGCGATCCTATGAAAGCCTATGGTGGGCGGTTGGCTGAACCTTACTATTTTTTTTCTTGAAATTTGATTGAGAAGTTCATTGTGCTATAAGACAAAAGTTGGGGGAAGGGGGGAAAACGAAGTTGGATGGAAGGAATACATTTAAACAACAGTAATTCTGCATCCCTCGAAAGTATGTAGCATTTTTTCTTAGCATAATTTAATATAACAATACGTGTGGGCGGCACATTCGCTGTACATTCTGTTGTATGGATATTTGGACTGCTCTGAACTATTTATAAACTAAACATTGAGTAGTGGTCAATCAAACAAATGAGGCTGTCTTTTATATTGCTCCTCTTGTAATTTGAAACGGGAGTATTAGATTTATGTACTATTGATCAATAGACCACTTAAGTATCTTTGTCAATAAAGAAAATCACTAGTCTCCTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476669 lncRNA upstream 3272 58805079 ~ 58805298 (+) True G420610
TU476667 lncRNA upstream 4362 58803982 ~ 58804208 (+) True G420608
TU476665 lncRNA upstream 5477 58802894 ~ 58803093 (+) True G420606
TU476603 lncRNA upstream 128706 58679586 ~ 58679864 (+) True G420545
TU476583 lncRNA upstream 138595 58669516 ~ 58669975 (+) True LOC110524159
TU476680 lncRNA downstream 2883 58831388 ~ 58831587 (+) True G420621
TU476681 lncRNA downstream 3886 58832391 ~ 58832640 (+) True G420622
TU476689 lncRNA downstream 29140 58857645 ~ 58857865 (+) True G420629
TU476702 lncRNA downstream 68395 58896900 ~ 58897108 (+) True G420642
TU476719 lncRNA downstream 113101 58941606 ~ 58942640 (+) False G420656
XM_021603549.2 mRNA upstream 5907 58756244 ~ 58802663 (+) True LOC110524163
LOC110522978 mRNA upstream 32228 58747592 ~ 58776342 (+) True LOC110522978
XM_021603548.2 mRNA upstream 72578 58726531 ~ 58735992 (+) False LOC110524162
XM_036977966.1 mRNA upstream 72578 58726531 ~ 58735992 (+) False LOC110524162
XM_036977967.1 mRNA upstream 72578 58726531 ~ 58735992 (+) True LOC110524162
XM_021603554.2 mRNA downstream 13944 58842449 ~ 58849428 (+) True LOC110524166
XM_036977970.1 mRNA downstream 34564 58863069 ~ 58877711 (+) False LOC110524168
XM_021603555.2 mRNA downstream 34564 58863069 ~ 58878412 (+) False LOC110524168
XM_021603556.2 mRNA downstream 34564 58863069 ~ 58878412 (+) False LOC110524168
XM_021603557.2 mRNA downstream 34564 58863069 ~ 58878412 (+) False LOC110524168
TU476101 other upstream 391794 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 908922 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1441233 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 1850405 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 1883394 56923924 ~ 56925176 (+) True G418251
TU476694 other downstream 114223 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 1865752 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 2893032 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3277018 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 3454647 62283152 ~ 62306937 (+) False LOC110524265

Expression Profile