RNA id: XM_021603553.2


Basic Information

Item Value
RNA id XM_021603553.2
length 986
RNA type mRNA
GC content 0.50
exon number 6
gene id gamt
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58852019 ~ 58856447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCTATGCCTACGCCTCGTTGACGTCTTGCACAGTCAGCACTTCTGACCCATATAAATCCCCACCGCTACAAAATCTGTCCTTCCTCTGCCACGACGTGGAGACAGCAACTCCGTCCATCCCCCATCTAATAAAGAAAGCCAACCACCAAAATGACTACGGCACAACCCATATTTTCCAAGGGAGAAGACTGCAAAGCTGGCTGGCACGACGCGGGTGCTGGTTACAATGAGACCGACACTCATCTCGAGATTTTGGGCAAGCCGGTTATGGAACGTTGGGAGACTCCGTACATGCACTCGCTGGCAATTGTAGCCTCCTCAAAAGGTGGACGGGTTCTGGAGATAGGGTTTGGCATGGCCATCGCGGCAACTAAAGTCGAGTCCTTCCCCATCGAGGAGCACTGGATCATTGAGTGCAATGATGGAGTGTTCGCAAGATTGCAGGAGTGGGCCAAGGCTCAGCCACATAAAATTGTGCCCCTCAAAGGACTGTGGGAGGAGGTAGTGGGCGGCCTGCCTGACAACCACTTTGATGGCATTCTGTACGACACCTACCCTCTGTCTGAAGACACATGGCACACTCACCAGTTTGACTTCATCAAGGGCCATGCCCACAGGCTGCTGAAGCCAGGTGGCGTTCTCACCTACTGTAACCTGACCTCCTGGGGTGAACTTCTCAAGACCAAATATGACAACATCGACAACATGTTCCAGGAGACCCAGATGCCTCAACTGCTTGAGGCTGGCTTCAAGAAGGAGATGATTAGCACCACAACCATGGATATTGTCCCCCCAAGCGAATGCAAATACTATGCCTTCCGCAAGATGATTACTCCCACCATTCTGAAAGAGTGAAATGGCTTGATGCCACTGCAATGTCATGCCTTCTCAAGTGCCTGTATTTTAAAAAGCCACATTAGTTtactgtcaaatccacaagcacTCAGGGATGTTCATCTTTCAATAAACCAATTTAAATCACG

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0030731 guanidinoacetate N-methyltransferase activity molecular_function

KEGG:

id description
K00542 GAMT; guanidinoacetate N-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477040 lncRNA downstream 9924 58841585 ~ 58842095 (-) True G420948
TU477013 lncRNA downstream 23449 58809034 ~ 58828570 (-) True G420921
TU477016 lncRNA downstream 28517 58822575 ~ 58823502 (-) True G420924
TU476983 lncRNA downstream 75342 58775981 ~ 58776677 (-) True G420894
TU476968 lncRNA downstream 98491 58751176 ~ 58753528 (-) True G420879
TU477044 lncRNA upstream 8652 58865099 ~ 58865767 (-) True G420951
TU477031 lncRNA upstream 10959 58867406 ~ 58868675 (-) True G420939
TU477024 lncRNA upstream 12371 58868818 ~ 58870227 (-) True G420932
TU477032 lncRNA upstream 13928 58870375 ~ 58871526 (-) True G420940
TU477029 lncRNA upstream 15200 58871647 ~ 58873135 (-) True G420937
XR_005051820.1 mRNA downstream 15908 58834262 ~ 58836111 (-) True LOC110524167
XM_021603545.2 mRNA downstream 176091 58671471 ~ 58675928 (-) True LOC110524158
XM_021603537.2 mRNA downstream 273408 58573258 ~ 58578611 (-) True LOC110524152
XM_021603536.2 mRNA downstream 284336 58546384 ~ 58567683 (-) False LOC110524151
XM_036977961.1 mRNA downstream 284336 58546384 ~ 58567683 (-) True LOC110524151
XR_005051821.1 mRNA upstream 126241 58982688 ~ 59001580 (-) True LOC118964628
trnaa-ugc-13 mRNA upstream 170079 59026526 ~ 59026598 (-) True trnaa-ugc-13
XM_021603568.2 mRNA upstream 198673 59055120 ~ 59115105 (-) False atp13a3
XM_021603569.2 mRNA upstream 198673 59055120 ~ 59115105 (-) False atp13a3
XM_036977976.1 mRNA upstream 198673 59055120 ~ 59115105 (-) False atp13a3
TU476443 other downstream 437876 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 737959 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 1146083 57699745 ~ 57705936 (-) True G419714
TU475533 other downstream 1225845 57620054 ~ 57626174 (-) True LOC110524128
TU475541 other downstream 1240452 57611059 ~ 57611567 (-) True G419603
TU477090 other upstream 169656 59026103 ~ 59036299 (-) True G420982
TU477230 other upstream 276423 59132870 ~ 59138257 (-) True lsg1
TU478587 other upstream 1244318 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 2202547 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 2760423 61616870 ~ 61617244 (-) True G424474

Expression Profile