RNA id: XM_021603556.2


Basic Information

Item Value
RNA id XM_021603556.2
length 2110
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC110524168
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58863069 ~ 58878412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccCCCTGGCTGGTGACCCCGTGTGGCAAACGTCGTCATTGCGCAGATTCAGTTTGAACCAAAAGCGGAGTGACCTTCCTCGAGAAGAGCAGTACTGAAGCAATAAACTAGTGACAGCATACCCGTTCCCTGCACTAGCCTTAGAAATGAACAGCAATTTAGCCGGAGATGAAGTTGGGAAACTGTTTGTGGGTGGCTTGGACTGGAGTACAACACAGGAAACTTTGAGAAACTATTTCTCGCAGTATGGGGAAGTAGTTGATTGTGTCATCATGAAGGACAAAACCACAAATCAGTCACGGGGCTTTGGTTTTGTCAAATTCAAAGACCCCAACTGTGTCCGGACTGTACTGGAGACCAAACCCCATAATCTTGATGGCAGAAATATTGATCCCAAGCCATGTACTCCCAGAGGAATGCAACCTGAAAAAGTGCGAACGAAGGATGGCTGGGGTAGCAAAGCTGACAGCAATAAATCAAAGAAGATATTTGTCGGCGGAATCCCCCATAACTGCGGTGAACCTGAACTCCGGGACTATTTCAATAGATTTGGAGTGGTCACAGAGGTGGTAATGATCTATGACGCGGAAAAACAGAGGCCCCGAGGTTTTGGATTTATTACTTTCGAGGCCGAACAATCAGTGGACCAGGCTGTCAACATGCATTTTCACGACATCATGGGCAAAAAAGTGGAAGTGAAAAGGGCTGAACCTCGGGACAGCAAAGCTCCTGGCCAGCTTGAACCTAACCAATGGGGACCCAGAGGCATCCTGAGTGCAGCCAATGGTTGGTCGGCACAGCCTGCCCAGGGCTGGCAGCAGAGTTATGGGCCTCCGGGAGTTTGGGTGTCTACAGGCCAGCCCATGGGTGGGTACGGGCCCCCTTTATCTGTGGGCCGTGGAGCTCCCGTCCAGCCCCCCTCACCGTTCAACGCATTCCTCGTCACAACGACCCCGCCGGGGGGGTTTGGTGCACCTCAGGCCTACGCTCAACAGGGATACAGCACACCACCTCAGTTTGGGTACAGTTTTGGCACGCCTCAAGGTGAGCAGTATGCCCCACAAGGAGTGCCGCCCCCGCCCACGACTCCGGTAACAGGGCCGCTAGGGTTTGTTCCAGCTACAGCACCTACTCAGGacatcagcaaagcacccacgGGACAGCCAGACTTCCCTTACAGCCAGTATGGCCTGAGTATCTACCCTCAGGAGCCCTCTTCCTACGGACCAACGCGTCCTTCTCACAGTAATGGTCAGGATGTGCAGGGAGGAAGTAGTGCAGGTTATGGTCAGGACCTGAGTGGGTTTGGCCATACTTTCGCAGATCCCAGCCAGCAGACCGCTTCATACGGGGCACCAACAGCACAACCGGTGGCGGGCCCCCAGCCGACAGCAGCCGCTTTTGCTCGAGGACAGAATCACAACGTAACGGGCTTTCATCCATACCGACGCTGAGCGTCTCCGACCGCCACAGCGCTCAGTTCTAAAGTCAGGGAAATGTGTTCTGGTCATAAGCAAAACTGGATTTCTGTGTTTGTTTTTTGGAACACAAAATGACACAATTTGGGGGGAAAAGTGAACTCTCATAAAACCAGGGATTCCAATTTACTTCTGTTACAATGTCACATGATGTAAAAGTTGATTTTTGCATAACCTTTCTTTCAAATGTTGAAATGAAAGGAACTTTGTTTCTCCCCACATGTTTTAAAGTAGGACTTTACTACTTTGCAATAGGTTTTGATTGTCTGGTCAAACACTAGCACAGagaatatatctatatatatagagagagagagagagacatatgtaTATTTATGCCAGATACAGAACTGAAAACAGGGTCTAAAGTTCTCAGCTTTAAATTTTagggaaaatgtttttaatttggtGGATTGTGTTTATTTTCTGAGTCTTTATTTTAAAGTTTGGAAAATATGAATATATATTATACACAAACTGCAATTTTTTTAAAGAGAATTTTGTACGAAAAATGTACACTTtgcttgtttttttatttaaagatGTAGACTTCCCTCAGGTGGCTGTTTTTGAGTGCATTTTGCACTTATGCAAAAAGAAAGGAATTTatttcaaataaatgttttaaagatA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476689 lncRNA upstream 5204 58857645 ~ 58857865 (+) True G420629
TU476681 lncRNA upstream 30429 58832391 ~ 58832640 (+) True G420622
TU476680 lncRNA upstream 31482 58831388 ~ 58831587 (+) True G420621
TU476669 lncRNA upstream 57771 58805079 ~ 58805298 (+) True G420610
TU476667 lncRNA upstream 58861 58803982 ~ 58804208 (+) True G420608
TU476702 lncRNA downstream 18488 58896900 ~ 58897108 (+) True G420642
TU476719 lncRNA downstream 63194 58941606 ~ 58942640 (+) False G420656
TU476721 lncRNA downstream 63194 58941606 ~ 58942560 (+) False G420656
TU476718 lncRNA downstream 63391 58941803 ~ 58942640 (+) False G420656
TU476716 lncRNA downstream 63829 58942241 ~ 58942560 (+) False G420656
XM_021603554.2 mRNA upstream 13641 58842449 ~ 58849428 (+) True LOC110524166
XM_021603552.2 mRNA upstream 34564 58808570 ~ 58828505 (+) True LOC110524164
XM_021603549.2 mRNA upstream 60406 58756244 ~ 58802663 (+) True LOC110524163
LOC110522978 mRNA upstream 86727 58747592 ~ 58776342 (+) True LOC110522978
XM_036977967.1 mRNA upstream 127077 58726531 ~ 58735992 (+) True LOC110524162
LOC110522979 mRNA downstream 9802 58888214 ~ 58900154 (+) True LOC110522979
XM_021603560.2 mRNA downstream 33497 58911909 ~ 58936361 (+) False LOC110524169
XM_036977971.1 mRNA downstream 33497 58911909 ~ 58936361 (+) True LOC110524169
XM_021603562.2 mRNA downstream 58413 58936825 ~ 58940467 (+) True ndufa7
XM_036977973.1 mRNA downstream 75401 58953813 ~ 58985589 (+) False LOC110522980
TU476101 other upstream 446293 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 963421 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1495732 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 1904904 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 1937893 56923924 ~ 56925176 (+) True G418251
TU476694 other downstream 64316 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 1815845 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 2843125 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3227111 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 3404740 62283152 ~ 62306937 (+) False LOC110524265

Expression Profile