RNA id: LOC110522979


Basic Information

Item Value
RNA id LOC110522979
length 2732
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110522979
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58888214 ~ 58900154 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCACTATGTGCATTGTTAAAGGAAAGAACTGTACAACGTGAAGAAGTGTACTAAGTTCTCACCAACATGTGTTTGTGCTAGAAAATACTGGTAGGCACTCTGCTAATAAACCTACCTGTAGTATTGTAAGTCTTTATCCCTGAAAGTCTGTGTGGTGTTTAGCAGGTGTCCTCCATGAAACCTGTAGAGATTAAGACCCAATGCTCAGGCACTCGCATGGACCCCAAGATCTCCTCCGGGGAATCCCCCCTTCTTGGCCTTTATCAACAATAGTCACCTGTGGGTGGTCAGCATTGAgaccggggaggagaggagactcaCCTACTGCCATAAAGGTTggtgtaacagtattgcttccatccctctcctcacccctacctgtgcttgaaccagggacccatctgcacacatcaacaattGCCTCCCGCGAAGCATCGAGCAGGCGGATGAGTCAGAGGTGGAGATAATTAATGTTCCCTCCCCAGCCCTGGAGGAGCGCAAGGCGGACGTTTACAGGTACCCCCGCACAGGGAGTAAGAATCCTCAAATTACCCTCAAAACGGCAGAAATCCAAACCAACCATCTTGGCAGAATTGTGAGCACCCAGGACAAGGAGCTGGTCCTGCCGTTCACCACCCTGTTCCCCGGGGTCGAGTACATTGCCCGCGCCGGCTGGACAATGGACAAGACGGCAAATAGTTATGCATGGGCAGTGCTGCTGTACAGGAGTCAGCAGAGGCTCCAGCTGGTCCTGCTGCCCCCGGGCCTATTCATCCCTGTAACTCAGGACCAGACCCACAGGGAGGAGAGTGTGGAGGCTGTGCTTGAGGGGGTCCACCCCTTCATCATCTGTGAGGAGATCACTGACATCTGGATCAATGTCTATGACATCTTTTATCTTTTTGTTCAAACAAGCTATGAGGAGATCACCTTCCTCAGGGTGAATGAGTCCAAAACTGGCTTCTGCCATTTGTACACGGTCACCACACTGTTACAACAGGGCTGTGACCAGTGGGCCAGAGACTACACTCAGACAACAGGCAGGAGACTACACTGTTATATTGATGTTGTTTTCTTCTCAGGGTGCCAAGGAGATTACATTCTACCAGAGACTTTTAATTTCTCAGGGAAGTCGAGGTTCCCGCTATACGGCATGTTGTGTAAACCACACAACTTGGTATCTGGCAGAGACCACCCCACCATCCCATTTGTGTGTTGAGGGCCCCAGGTGCAGTTAGTAAATAACTCGCACAAAGGAGTGAAGTACTTGAGGCTGAACACGCTAGCGCCACTATGCTACTCCGTCGTTGTCATCGATGGAAGAGGGCTCAAGTTCGAGGCTCTGAAAAACAAAATGGGCCAGGTGGAGGGGCTGCAGTACTTGGCCGACAAGTACAAGTTTGTTGACCTAAGTCGCGTGGCTATCCACGGCTGGTCCGACGGCGGCTTCCTCTCCCTCATGGGCCTTGTCTACAGCCCCAACATCTTCAAGGTGGCCATAGAGGGCGCCCCTGTGACTGTGTGGATGGCTTACACAGAGCGCTACATAGACCTGCCTGAGAACAACCAGCAGGGCTGCGAGACCGGCTCGGTCGACCCTGCCCATAGACAATCTGCCCAGCGAGCCTAACTGGTTACTTATTTTACACGGATTCCTTGATGAGACTGTGCACTTTTCCCACACCAACTTCCTGGGTTCTCAACTGATCCGCTGGGAAGCCTTATCTGCTACAGATCTACCCCGACGAGAGACACAGCATCCGCTGCCCAAAGTCTGGAGAGTACTATGAGATTATGCTGCTGCACTTCCTCCAGCAGTACCTCTGATGAGGGCTGCAGTTGAACGGAAAGagcccacctctcctccccccattGCCCAATGtcacccccgcccccccccccccgcgcccAGGCCGAGAGCAGAAATGTGTCGCCTATCAGTTTTTAACTGGACAATGGCTGTAAAGAAGGAGAAGAGTGAAAAAAGCGGAGCATTTTGAGAAACAGGCTTTCAGCATCTAGGAGTGATTTGGTGTTTTATTTGGGATTTTTGTGCCACACCCTGTTAGCAAAACTCCACCCCATGAACTCTCACTACCAAAACTCCTCCTCAGGAACTCTCACTACCAAAACTCCTCCTCAGGAACTCTCAATACCAAAACTCCTCCTCAGGAACTCTCACTACCAAAACTCCTCCTCAGGAACTCTCACTACCAAAACTCCTCCTCAGGAACTCTCAATAGCAAAACTCCTCAGGAACTCTCACTACCAAAACTCCTCCTCAGGAACTCTCACTACCAAAACTCCTCCTCAGGAACTCTCAATAGCAAAACTCCTCCTCAGGAACTCTCACTACCAAAACTCCTCCTCAGGAACTCTCAATACCAAAACTCCTCCTCAGGAACTCTCACTACCAAAACTCCTCCTCAGGAACTCTCACTACCAAAACTCCTCCTCAGGAACTCTCACTACCAAAACTCCTCCTCAGGAACTCTCATTAGCAAAACTCCTCCTCAGGAACTCTCACTACCAAAACTCCTCCTCAGGAACTCTCACTACCAAAACTCCTCCTCAGGAACTCTCACTACCAAAACTCCTCCTCAGGAACTCTCACTACCAAATGTGTCTTTGTTTCTTCTCCCGTCAGTGGCTTAAGACTGCACCTGGTGATGACACACAAGCATTGCTAACACATACACGTATGCACTTATCCCCATTTTTGTTCTTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476689 lncRNA upstream 30349 58857645 ~ 58857865 (+) True G420629
TU476681 lncRNA upstream 55574 58832391 ~ 58832640 (+) True G420622
TU476680 lncRNA upstream 56627 58831388 ~ 58831587 (+) True G420621
TU476669 lncRNA upstream 82916 58805079 ~ 58805298 (+) True G420610
TU476667 lncRNA upstream 84006 58803982 ~ 58804208 (+) True G420608
TU476719 lncRNA downstream 41452 58941606 ~ 58942640 (+) False G420656
TU476721 lncRNA downstream 41452 58941606 ~ 58942560 (+) False G420656
TU476718 lncRNA downstream 41649 58941803 ~ 58942640 (+) False G420656
TU476716 lncRNA downstream 42087 58942241 ~ 58942560 (+) False G420656
TU476717 lncRNA downstream 42087 58942241 ~ 58942640 (+) True G420656
XM_021603555.2 mRNA upstream 9802 58863069 ~ 58878412 (+) False LOC110524168
XM_021603556.2 mRNA upstream 9802 58863069 ~ 58878412 (+) False LOC110524168
XM_021603557.2 mRNA upstream 9802 58863069 ~ 58878412 (+) False LOC110524168
XM_036977969.1 mRNA upstream 9802 58863640 ~ 58878412 (+) True LOC110524168
XM_036977970.1 mRNA upstream 10503 58863069 ~ 58877711 (+) False LOC110524168
XM_021603560.2 mRNA downstream 11755 58911909 ~ 58936361 (+) False LOC110524169
XM_036977971.1 mRNA downstream 11755 58911909 ~ 58936361 (+) True LOC110524169
XM_021603562.2 mRNA downstream 36671 58936825 ~ 58940467 (+) True ndufa7
XM_036977973.1 mRNA downstream 53659 58953813 ~ 58985589 (+) False LOC110522980
XM_036977972.1 mRNA downstream 53663 58953817 ~ 58985589 (+) False LOC110522980
TU476101 other upstream 471438 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 988566 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1520877 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 1930049 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 1963038 56923924 ~ 56925176 (+) True G418251
TU476694 other downstream 42574 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 1794103 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 2821383 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3205369 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 3382998 62283152 ~ 62306937 (+) False LOC110524265

Expression Profile