RNA id: XM_021603560.2


Basic Information

Item Value
RNA id XM_021603560.2
length 3856
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC110524169
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58911909 ~ 58936361 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCTCCTACTACTTTTATTGGTCACACATTGGTCACACATCCCCTAGCACCGATTGGATGATTCCCCTGTCTATCATTGATTTAGCCCCTTTGAAGAGTGAGAAAACGTAAGGGTGGCATGTTTTCCTGTCTTCCTAAATTTATTAACTTATCCCGGGAATGCCATCAGAAGTTAGATTGAACGTTGAAAGAAAGCCATAGAACGTCTGAAAGTGGAGCTAAGGAGTGGTGACCCAGAACTGGATTGACAGCCAGGAAGACCAACCCAAAGTGAACCCCCTGGCCCAGTGTCAAGACACCTTTATGATTCTTCCACAGACTGTATGACTGAGGTTGTGCGTAGACTCTCTGGGGGCTTCTGCTGAAAGGTCTCAGTCCACAACCATGACTCAGTCTGTGCAGGTCAACCCCAAGTTGCCTGATCTGGGCGCACCGTTTCTATTCTCCAGTCAGGAAGAGGCGGATCAACAGGGCTCTTATTCGGTCCAAACTCCGTATGGCTTCCAGCTGGACCTGGACTTCCTCAAGTATGTGGAGGAGATAGAAAGCGGCCACCACGTCCGCCGGGCACCCGTCAACTCTCGCAGGTCATCCCGTGGGGTCAAAGTCTCCCAGCGGAGCCCGAATGTGGGAGGAAGAGCCAGCGGCTGGACCTCAACagagtccctctcctcacccgcCAGTGAAGATGGTCGTgcgccccctcctccacccccacgGAATCGCATCGGCTCCTCTCCCAGTGAGGGGCAACCCCTGTCCCCGCTATCTGTCCTTagcctccccctctctgctgGCGCCAAAGTGCCACCACCACCTCCGCTACGTAACCCCAGGGTAGAGAGGACCCTCTTGGAGACCAGCCTGCGACTGCAGCAGGAGCAGAGCCACCAGCACCAAAATGGCACCTGTTTCCAGCTCTCTGACCCACCAAAGCAAAGCCCCAGGGCTGTGACTACTCATGTTACCCCAGCTAGTGCAGCAGCCACAGTAGATGTCCAGCCCTTGCACCTCTTCTCTGCCGCCCCCAGCCCATCTCAGAGTAGTCTGACCAGACCCAGTCCCCACTCCTCCGGTAGGAGCACCCCGGCCTCTAGCACCGGAATGGCTACTCTGCCTCCCAGCCAGTTGCAGACTGTGAGAGAGCAGATGGCCACTGCCCTGAGGCAActgaaggagatggaggagagagtgaagggcgTCCCAGTGCTGGAAAGAGAGGTGGCCAAGCTACGGGCTGAGAAAGACCTGCTCCTACTGGCACTGCAGGAGAAGAAAACCTTGGCGGCCCAACAACAGGCTGCAACAGTAGTGAGCAGTACTACCACCACAACGATGGACACTGGCACACAGAGTCAGGAAAGTCCTCCTTTTTCCCCCAAGAGTCCCAGAAGTCCCAAGAGTCCAAGCAAAATAGGGGACCTCAGAAAGCTGACTGAGAAGTTTGAAGGCAAGACTGGGAAAGGTGGAGCACGTTCTGAGAAGGTTGTGGAGAAGAGGTCTGTGGCCGTCGGGGACGACATGTTGCTGGACGCTGGGGTCTTCTACTACAGCCAAGGTACCAAGGATGCCTCAGAGGGCACGCCTCAGGTGGACGTCTGCGAGAAAGGTGTGGCCACGGAGGCACCGGCCTTCCGTGAGGAGTGGGTGCAGGCTGGGGTGGAGACAGAGGAGGCCTCGGTTTGGGTGATGGAATCCCAGCTGGGGCTGAGCAGTGAGGTCCAGAGGGAGATTGACACCCTACAGGACACCATCAAGTTCCAGCAGGAGTCCATCTTGGCTCTGGAGGGGCGAGTCGGCCAGGCTGACGAGGACCTGGCGGTGCTCAAAGCCCAGGAGGATGAGAGGAAATCCAAAGCAACGTCCGAGAAGGCGGTCCTTGCCAAAccagactcagcccatgcccaaGTGGGGACCGAAGCCTCTACAACATCCACGCCAGCTTCACAGCATGTCGCAGTCTCCTGTTGTCCTGAGGTGGTTGACGCTTGTGTAGGTGAGGATTTGAGAGCCGTACATTACGACCAGAGCACTCAGACTGACTCTGTGGAGAGCCCTGCAGAAGAAGAATCTACCCCAGTAGCACTGGTCAGCACTGGGAGTCAATGGGAGAATCTGTACGAGGATGAGACTATAGAGCAGAAAGCTCCAGTCACTGCGCTGAAGAAGAGACAGATGACCATTGCAGAGTACAAGGTCACCCCTGAGGAGACGGTCCGTTTAGacgaagggaagggagggaaagaggaggaaacGGTGCCCAGGACACACACAACTCCAACAATGGTGGAAAGTATGCTGAAGTCCATcatgaagaagaaggatgggagTAGTTCCGGTGAATCACGTAGCAGCGGCAAGAAGAGCTTGCAGTTTGTTGGCATTCTCAACGGGGGGTATGAGTCGACATctagtgaggaggaggaagaggggagttcCTCGGGTGGCAGTGAAGTGGATGATTGCTCGGACAGTAGTGATGGCGAAGATGGAGAGGCAGCTCTGGAGGAGACCTCTGATGAAGAGCGGAACATTAATATGGATGATACCGATAGTGATGATATGGCCTTAGAAGCAGGGACTGGAGCCACTGAGGACAGTCCAGATGCAGTGAAAGAGAAATTTGAGCTGAGTGCAAAAATGCATGAGGCTTCTCTCATTCTGAAGAACCACCTGAATGATGATGTCAAAACACTGAAGAGTAAAGAAGTGCTCTCCAGCATTCATACTGTGCAGCTGGAATGGTTCCGCATCTCTAGTGCAAAGATGGCCCAGCCGCCCCGTGTCTCAGACTACCTGATGGCCTTCACTGAGGTCTCCTCTGCCCTGCTGGCCCACGTCATCAACATGACCGATGGCAATGGTAACACGGCCTTGCACTACAGCGTCTCCCACTCCAATTTCACAGTGGTGGGGCTACTACTGGACACAGGCATGTGTTGTGTGGATAAGCAGAACAAGGCAGGCTACACTGCTATCATGCTGGCGGCCCTCTCATCTGTGAAAGAGGAGGATGACATGGTGGTGGTCAGGAAGCTCTTCAGTCAGGGCAACGTCAACGCCAAGGCCAGCCAGGCTGGCCAGACAGCGCTGATGTTAGCCGTTAGCCATGGACGGCAGGAGATGGTGCGGGCGCTACTGGACTGCGGGGCTGAAGTGAACGTGAAGGATGACGAGGGCTCCACGGCGCTCATGTGCGCCAGCGAGCACGGCCGCGCCGAGATTGTCTCGCTGCTCCTGGATCAGCCGGGCTGTGACATCTCCATCGTGGACAATgATGGCAGTAATGCGCTTTCCATCGCCCTGGAGGCCTCTCACAATGACACAGCTGTGCTACTCTACGCCCACATGAACTACACCAAAGCCCAGGCAGCTGGGACAAACAAGTCTCGAAGCCCCACTAGTCCTCAAAAGACATGGCCTGCTGCGGAGTGATTTACCACCaagatagaaaaacaaacattacTGGACATAAGCGTTGAAAAAGCTCCACTGGAATATTGCAGCTGTCTACataaatatatgtatttatatcaTGGCATACGTTATTCATTTGTATTGTTAATATAAGATTGTTATTTTTCCATAAATGTCATTATTATATACAATACTAATCTGCATTTGCAACATTTCTAATTCAAGGTCTGCAGCATTTAGTTTTCTATGATACAGTAAAGCAGACCTCACATTTATTTGCACTCATTTACTGTGTTGAGTTTTAGTTCCCCTCCCTCTTTAACTACCTTCTCAATCTTCATGCCAATGTCATTCAAGTCTGCACTAACTGTCTATGCCTTGTATATTCATGTATTGAttttcatgtaaaaaataaaaatatatttacataacATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476702 lncRNA upstream 14801 58896900 ~ 58897108 (+) True G420642
TU476689 lncRNA upstream 54044 58857645 ~ 58857865 (+) True G420629
TU476681 lncRNA upstream 79269 58832391 ~ 58832640 (+) True G420622
TU476680 lncRNA upstream 80322 58831388 ~ 58831587 (+) True G420621
TU476669 lncRNA upstream 106611 58805079 ~ 58805298 (+) True G420610
TU476719 lncRNA downstream 5245 58941606 ~ 58942640 (+) False G420656
TU476721 lncRNA downstream 5245 58941606 ~ 58942560 (+) False G420656
TU476718 lncRNA downstream 5442 58941803 ~ 58942640 (+) False G420656
TU476716 lncRNA downstream 5880 58942241 ~ 58942560 (+) False G420656
TU476717 lncRNA downstream 5880 58942241 ~ 58942640 (+) True G420656
LOC110522979 mRNA upstream 11755 58888214 ~ 58900154 (+) True LOC110522979
XM_021603555.2 mRNA upstream 33497 58863069 ~ 58878412 (+) False LOC110524168
XM_021603556.2 mRNA upstream 33497 58863069 ~ 58878412 (+) False LOC110524168
XM_021603557.2 mRNA upstream 33497 58863069 ~ 58878412 (+) False LOC110524168
XM_036977969.1 mRNA upstream 33497 58863640 ~ 58878412 (+) True LOC110524168
XM_021603562.2 mRNA downstream 464 58936825 ~ 58940467 (+) True ndufa7
XM_036977973.1 mRNA downstream 17452 58953813 ~ 58985589 (+) False LOC110522980
XM_036977972.1 mRNA downstream 17456 58953817 ~ 58985589 (+) False LOC110522980
XM_036977974.1 mRNA downstream 17466 58953827 ~ 58985589 (+) True LOC110522980
XM_021603563.2 mRNA downstream 70972 59007333 ~ 59013082 (+) True LOC110524171
TU476101 other upstream 495133 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 1012261 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1544572 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 1953744 56943838 ~ 56958165 (+) True LOC100135807
TU474058 other upstream 1986733 56923924 ~ 56925176 (+) True G418251
TU476694 other downstream 6367 58942728 ~ 58944217 (+) True G420634
TU478964 other downstream 1757896 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 2785176 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3169162 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 3346791 62283152 ~ 62306937 (+) False LOC110524265

Expression Profile