RNA id: XM_036977974.1


Basic Information

Item Value
RNA id XM_036977974.1
length 2983
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC110522980
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58953813 ~ 58985589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATGCGACTCAACACCAAGAAAGGGTTTCAGCTTCACAGACATGTTCAGTTCAGATTTCGAACACATCGCAACACAACCGTTTTTAACGCTGCTCGTCTTATTATCTCCCGCAACATTACGTCATTCGCATGCGCCTCTGCCTGAAGACAACGAAGGACAGAGCATGGGATATCTTAGTAGAATACTTCTTCTTACTCAGTTGCTAACCTTACATCATATTTGGGGGGAGCAGACCTGCCCAGGGTTTCTGTGTAAAGATGGAGGCTGCGTTGCCCAGAGTGCTCTCTGTGACAACACTCCGGACTGCCGTGATGGCTCTGACGAGTTAGAAGATACCTGTGGTTTGCGCCACTGTAAGAAGGATGAGTTTGCCTGCAGCAGTAGCCGATGTGTATCCCTCCGCTTCCGTTGTGATGGCACTGACGACTGTGGCGACGGCAGTGACGAAGCCTCCTGTCAGAACTGTACAGCCGACTTCTTCCTCTGTGAGAGGACAGGGAGCTGCGTTGCCAGGGCCAAGCTGTGCGACGGTCGGCCCGATTGCCCTGACGGGCAGGACGAGGGCGCTGACGCTTGTCCCTCCGGCCAGCACCCTGCCCCTCACACCTGCTCAATCTCTGAGTTCAGTTGTGGGGACGGCCAGTGTATGCCTCACTCCTGGAGATGTGACCACTCGCCTGACTGTGCTGACGCGAGGGATGAGGATGACTGTGatcagAATGAGTGTCTGGTGAACAATGGTGGCTGTTCTCACCTGTGTGTGGACCAGCCGATGGGCTTCCTCTGTGACTGCCCTGCTGGTATGAGGCTGGTGCATGACTCCCAGTGTGAGGaaATTGACATGTGTCTCGACTCTGACGTCTGCAATCAGCTATGTGTACATGTCAACGGGACTTTCTCCTGCGACTGCCATGAGGGCTACCTGATGAGCCCAAGGACAGGGGAGTGTAAGGCTAAAGGAGACGTGGCTCAGCTGGTGTTGAGCAGTTCTGAGGGGGTGCGCCGGGTCAACACTGCCGGTATGGAGTACAGGGAGATGGCTGCTCACTTACTGGGACCAGGGCCAATGGCTGCCCTGACTGCAAACCGCACTGTCTACTGGGCAAGGCCAGGACAAGGGTCCATCTACAGGATCTCCATGGATGGGAAGCCCCTGGAGCCTGTCCTGCTGTTGAAAGGCCATGGTGCTGTCCTGGGTCTGGCTGTGGACTGGATCCATGAGCTTCTCTACTGGACCAACGCTGATACTCACTCCATCGATGTGGCCCGTCTGGACGTCTCTGCACAACGCCTCCTGATAGGAGGGCTGGCCATGCCCACTGGAGTGGCTGTGGAACCCTTGTTGGGGTTTTTGTTCTGGGCAGAAGGTGGCAGCTCCCCCAGGATCGAGCGTGCTGGCCTGGATGGAGAAGGCAGGCTGCCACTAATCACCTCAGCCATATGGAACCCAGTCGCCATCTCTCTggACATGCCTCGACGACTCCTGTACTGGGTTGACTCAGGGATGCGCACCATCTCGAGGGTCGGGTTCGACGGGCAGCATCGCAAGACCGTGGTGGAGTCCAATGGATACCTGGACAGGCCCTTCGGATTGGCAGTGTTTGAGGGACATGTATACTGGAGTGAACAGGACACCCACTCCATATGTAGTGCTGACAAGCACAATGGCAGCCTCTTTAGAGTCATCCTGCCCAATATCGCTTCCCCAGGCGGCTTGGTTCTCATTCACCCGGTTCTTCAACCAAAAGGCCCTGCTGTGTGTGGAAATAACGGCGGAGTTTGTCTATATGAGTGTGAGCCAGACCTTTTCTCTGGAACAAGCTCTCCCAGCTTCACCTGCATTCCTCCAAAAGGGAGTAGCggtgatgatgttgatgATACAGTCGTTTCTCACACTCTTCCAGGCCCAGCGCTGTCTGATACAACCTCTGCTGGAATCCTTTCGCTCATAGTTGTCCTGAGTGTGCTATTGGCAGgggtggtgttgtggtggtggagggaggagtgCAGGCCCTCCAGGACACTCGACCTCCAAGACTTCTCCCTGAAGGAGTCCCAGGACCCCCTCATCCAGGCACCAGCCAGAGGCATGGAGGTTTGTCCTGTCAAGGACACTTTGCTTAAGCTGGACTTGGACCATTACTGAGTGTCTTAAGTCACGTGTAAGAGTCACCGGTGTCCAGCTGTGCTCCCACCCCTCCCAGTGCCAGCAGTCCCTGGAGTCTCATCAGGTTATCTGGCCAAAGGGagtgagaagaagagaggaggcatCTTACAGCACTTCCCCTTGATGACCAGTGGTCCTCCCAGGGCCTCATTCAACCTCAATGTTGATTTCATTTGAGTTGTGGCTCATTTAAAGCCTGGATCAAGTACACCTCGGTTTCAGTGAAGGCTAAAAATGTACTTAAACAATTGACTTGAAAATTACTTGAGCAACTTTGCGTTTTCTAACTTGACTGGAGTTTTattggaattgaccccagccTTGGGGGTCCTGGAGCATGTCAGTGATTAGCTACAGATGTCCAGCCTATGAGATACTGTACCTCTCATGCATACACTTGAATTGTGACAACATCTGAATGTTTTTTTGCAATCGGTTGGCTAGTCTATATGTTCAAACTAATCCCCATatttcgtcagggcatggactctacaaggtgtcatcagcatttcacggtgatgctggcccatgttgacaccaatgcttcccacagttgttgcAAGTTGGCTGGATATAATTTGGGTGatggacaattcttgatacacactggaaactgttgtgtgaaaaacccagcagcgttgcatttCTTGACACTCAAATCGGCGCGccttgcacctactaccatatcccgttcaaagggACTTAAGtattttgtcttgccctttcATCCTCTGAagggcacacaaacacaatccatgtctcaagacttgaaaatgattctttaacctgtctcctctcattcatctacacagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476730 lncRNA upstream 950 58952502 ~ 58952877 (+) True G420665
TU476728 lncRNA upstream 2493 58951093 ~ 58951334 (+) True G420663
TU476724 lncRNA upstream 6150 58947469 ~ 58947677 (+) True G420659
TU476717 lncRNA upstream 11187 58942241 ~ 58942640 (+) True G420656
TU476716 lncRNA upstream 11267 58942241 ~ 58942560 (+) False G420656
TU477183 lncRNA downstream 130897 59116486 ~ 59116704 (+) True G421069
TU477194 lncRNA downstream 136715 59122304 ~ 59122532 (+) True G421080
TU477207 lncRNA downstream 145596 59131185 ~ 59133005 (+) False G421090
TU477206 lncRNA downstream 146924 59132513 ~ 59133005 (+) True G421090
TU477252 lncRNA downstream 184444 59170033 ~ 59171379 (+) True G421133
XM_021603562.2 mRNA upstream 13360 58936825 ~ 58940467 (+) True ndufa7
XM_021603560.2 mRNA upstream 17466 58911909 ~ 58936361 (+) False LOC110524169
XM_036977971.1 mRNA upstream 17466 58911909 ~ 58936361 (+) True LOC110524169
LOC110522979 mRNA upstream 53673 58888214 ~ 58900154 (+) True LOC110522979
XM_036977969.1 mRNA upstream 75415 58863640 ~ 58878412 (+) True LOC110524168
XM_021603563.2 mRNA downstream 21744 59007333 ~ 59013082 (+) True LOC110524171
XM_021603564.2 mRNA downstream 40416 59026005 ~ 59036303 (+) False LOC110524172
XM_036977975.1 mRNA downstream 40588 59026177 ~ 59036303 (+) False LOC110524172
XM_021603565.2 mRNA downstream 45875 59031464 ~ 59036303 (+) True LOC110524172
XM_021603566.2 mRNA downstream 52798 59038387 ~ 59050166 (+) True LOC110524173
TU476694 other upstream 9610 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 537051 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 1054179 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1586490 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 1995662 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 1708668 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 2735948 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3119934 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 3297563 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 4059501 63045090 ~ 63051530 (+) True G425224

Expression Profile