RNA id: XM_021603563.2


Basic Information

Item Value
RNA id XM_021603563.2
length 2669
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110524171
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59007333 ~ 59013082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTATTTATAATTTTCAGAGTGAGCCAAGTCAACACCAGACGTTCTGTCGGAAGGGGGAAAAGAGCAACAAGGATGAGAAGGTCTTCTCGTTTGCTTGAGGTGACAGCTTTACTTGTAATAGCCATTCTGTGCCTGGtcatcattttttttaaagaggacATTCCCCCTGATGAACCCTctaaccatgtccagataaacaGAAAGGAATTAACCTACAAAAACAGACCTCAGAAACCAACCAGTGAGAGCGCAGGTGTTTTCAACTGGGGCCATTGTCAACGGAATGAGTCTGCCGCAAATGTGTCAGGATTTTCCTCTCTGCCTGGTCACATCCAAAACTTCCTCTTCTATCGTCATTGCCGCCACTTCCCAATGCTGCTGGACGTACCTGATAAATGTGGAGGCCCTCACAAGTCTGCTGACGTCTTCCTTCTGCTGGTCATAAAAAGCTCACCCGTGAATTACGACCGCCGTGAGGTACTACGGAAAACCTGGGCCAAGGAGAGACTGCAAAACGAAGTGTGGATCCGCAGGATTTTTCTCTCTGGAACCACAGGCACAGGCTTTGAGAAGCGCACGCTAAACAAGCTTTTACGACTGGAGAATCGTGAGCATAATGATATCTTGCAGTGGGACTTCAATGACTCCTTCTTCAACCTCACCCTGAAGCAAATCGTGTTCCTAGAGTGGATGGACAAGAACTGCCGCCAGGCCAGATTTCTCTTCAACGGTGACGATGATATCTTCGCGAACACAGATAACATGGTGGACTTCCTTCAGAGCCAAGAAAACAAAGATGGTGACAAGCACCTTTTTGCGGGCTATCTAATCCGCTATGTCGGACCCATTAGAGAGTCAGGGAGCAAATACTATGTCCCAGTCCAGGTTCAAGAGTCAGACTCGTATCCCCCTTATTGTGGTGGAGGGGGTTTCCTGCTCTCTGGATACACAGCTATGGTCATTTACAAAATGTCCCATACCATTCCCATTTTGCCAATTGACGACGTCTACATGGGAATGTGTCTGGAAAAGGCTGGTCTTAGGCCAGAGTCCCATTTTGGTGTCAAGACTGCTGGACTGCAAGTCCCCTCCCAAAAAGTGGACGCTTACGACCCTTGTTATTACAGGGAAATAATTCTAGTACACAGATTTCTACCCCATCAGATATATATTATGTGGCATGGAATACATGAACCTAACTTGAAATGTGGGAATTTGCAAGGTTCACTTTAACCCTTGAAATCAGACGCCTGCTCAGGTTCCTTTTTCCAATCTTTTTTTGCCAAGCAGTTACTGAGGTGTGCTCTCTCAAAGCAGGTGTTATTCCTGCAGATGTTTGAACAATGCCGGATCTATTGGCATATGGCAGGTTACTGTGAAATTTGACAGCTGGCACTGTTATTCATGTAAATGATTGACGACACATTGATttataatcccccccccccaaaaaaaaatgagTAGACGTGTATACCTGTCACTATGCATCACTTTTATTTATTATACTTTAAAGGGGAAATGAATGTCCATTTTGTTTAGCCGTTGATTCTCACTTTCTTTACACTCCTTGTCTGCTGTGTTTGACCTTTTTATCTGAACACTCTAGTGTAAAGCACAGTGCCTCAGGAACACGCCACCACCCGCTAAGCTCAGATAGGAAACTGTTGTGGTTCACTGCACAAAATACGGTTAGACAGGGCATTCTTTGTCTTTAGGCATTCTGTTTGTTCTTTGGAAATGTTTTCTTGAAAATGTTCTCTTTTTAAATTCATAATCAGAGGATGAACacctgtgtgtctttctgtgaaTCTAATGCTGACTGCATGTTTATAGAATATACTTTTTATCCATTTGTATAACAATTGTGAACAGATCAGTTTGTCCGTCGCACCCTAACACAGGTTGGAGACATAAAATGAACAGACCAGAGGCAGTGGTTGTGGGTTCCTTTTCTTTTGTATCATTTACTAAACGGGTCTTCTTTTGCCCGACAAAATAACTCCAGTACAGGGGACATCCAACGCTGAAACACCAGCGTAACAAAACAAGAACTAAGCTGTTGGCCTAAAGGCTGTGGCCAAAAAGAGAAAGCAAAACAATGAACAGCTACTCCTGTCTTAAACTATCGTCTATACGTAACAGTTACAGGAGGAACGCTTCTCTCTACCTAAAACCTGCCTAGGTTAACAGAGAGACAAGGTGCCCAGTCCCAGATGCTTTCTCTGAGGTAGGAAAAACCCACGCCCTCACAGGTCCTCGTCTCTACTCCCAATCCTCCCCCAGCTCCTCTCCTGGCACACCGATATAGGAGGAAGACTCAAAGCAATTAGTGGTCCCAGCTGTGTACTAATTGGCTTCACACTGAATACCTGTCCCCTGAGGAGGGTGCTGTCATTTAGTCTTCATCTGGCTGGTCGCTGAACTCTCACACAGTGTTGTTGCaaattgcatgtgtgatttattTGTCTTTAatcacacacacgaacacagacTTTTAATTGTCATTTCggtcatttgtgtggtattaaaaaatatttgtctaatgtctccagtcatgtaaaactATGTACAATTGTGTGAAATCATTTTATATAAAGGTCTATTCTTTCCCGGACCCGCATATAATagatgcatgcaatgctttataATAAAGGGGATTTTTGGGGGG

Function

GO: NA

KEGG:

id description
K07970 B3GNT3; beta-1,3-N-acetylglucosaminyltransferase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476730 lncRNA upstream 54456 58952502 ~ 58952877 (+) True G420665
TU476728 lncRNA upstream 55999 58951093 ~ 58951334 (+) True G420663
TU476724 lncRNA upstream 59656 58947469 ~ 58947677 (+) True G420659
TU476717 lncRNA upstream 64693 58942241 ~ 58942640 (+) True G420656
TU476716 lncRNA upstream 64773 58942241 ~ 58942560 (+) False G420656
TU477183 lncRNA downstream 103404 59116486 ~ 59116704 (+) True G421069
TU477194 lncRNA downstream 109222 59122304 ~ 59122532 (+) True G421080
TU477207 lncRNA downstream 118103 59131185 ~ 59133005 (+) False G421090
TU477206 lncRNA downstream 119431 59132513 ~ 59133005 (+) True G421090
TU477252 lncRNA downstream 156951 59170033 ~ 59171379 (+) True G421133
XM_036977973.1 mRNA upstream 21744 58953813 ~ 58985589 (+) False LOC110522980
XM_036977972.1 mRNA upstream 21744 58953817 ~ 58985589 (+) False LOC110522980
XM_036977974.1 mRNA upstream 21744 58953827 ~ 58985589 (+) True LOC110522980
XM_021603562.2 mRNA upstream 66866 58936825 ~ 58940467 (+) True ndufa7
XM_021603560.2 mRNA upstream 70972 58911909 ~ 58936361 (+) False LOC110524169
XM_021603564.2 mRNA downstream 12923 59026005 ~ 59036303 (+) False LOC110524172
XM_036977975.1 mRNA downstream 13095 59026177 ~ 59036303 (+) False LOC110524172
XM_021603565.2 mRNA downstream 18382 59031464 ~ 59036303 (+) True LOC110524172
XM_021603566.2 mRNA downstream 25305 59038387 ~ 59050166 (+) True LOC110524173
XM_021603574.2 mRNA downstream 126355 59139437 ~ 59141452 (+) True fam43a
TU476694 other upstream 63116 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 590557 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 1107685 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1639996 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 2049168 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 1681175 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 2708455 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3092441 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 3270070 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 4032008 63045090 ~ 63051530 (+) True G425224

Expression Profile