RNA id: XM_021603565.2


Basic Information

Item Value
RNA id XM_021603565.2
length 2668
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110524172
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59026005 ~ 59036303 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcggcatttttccatttttgggaaaggttgctggatcgaatccccgagctgacaaggtaaaaaatatgttgttctgcccctgagcaaggcagttagttaacccactgttccttgggcACCGAAGACGTTGATGTCCATTTAAGGCCCCAGCACCTCTCTGATTgaggttaaatgcagaagacacatttcagCTGAAGAATAGGCCTAGTCTTAGGGATGCCGAAGAAGTTCCAGGGTGAGAACTCCAAGGCGGTCACTGCCAAGGCCCGCAAGGCAGAGGCCAAAGCAGTGGAAGACGCCCGCAAGAAGAAGGAGCTGGAGGATGCACTATGGCAGGAGAACGACAAACATGTCCTGAAGAAAGAACAGAGGAAGGATGACAAGGAGAAAAAGCGCCTTGAGGCCCTGGAGCGAAAGAAGGAGAACCAGCGGCTCTTAGATGAGGAGGCTGCAAAGATTAAGGGCAAGGCCaaggaggctgctgctgctgctgtggtggCAGGCAAAGTAACTCGGGCCCAGATTGAGGAGATGTTGCATGTCGAGCAGCAGCTACAACAGCAGGAGCAACCCAAAGAGAAAGAGAAGAGCCACCTGGAGACACCCCTGGAGGAGAACGTGAATCGCATCATTCCTGAGGAAGGTGTTGTGGAGGCTAGAACCATAGAGGATGCCATTGCCATGCTCAGCACGGCTGAAGAGCTCGACCGCCACCCAGAGCGCAGGGTGAAGGCAGCGTTCGCCGCGTTCGAGGATCTGAACATGCCCCTTCTTAAAAAAGAGAACCCCAACATGCGGCTGTCGCAGCTCAAGCAACAGCTGAAAAAGGAGTGGATGAAGTCGCCAGAGAACCCCCTGAACCAGCGCTTTGCCAACTACAACACAAAGTGAACCAACTCCAGCAGCAGCTAAAAAAACTGTTTACCTATGCACATTGGACCTTACAATGGAAGATGCCCCCAACCTATAATTATTCccccatttatgaatgtgttgcTGGAAAAGCTGCATTCATTCCCTAGGAAGGACCTCCGATGCAAGGAATCACCTTGGGACTTCCGCTTGTTTCGTTCCGATTTGACAAGGAAAAGCAAACTCCCAACCAATGTTCCTGATGATTTTATTTTACTGTGCATGTCCACTTGTGAAGCATCTCGGCAGTTTATGGATTTTATTCCCACTGTCAGTTTTTGGCACTTATGTTGAAAAGGGATTAAAGTAATTTATTTCAGTTCACAATACACTAACATATCTAATTCTTTCTGAGAATGAGACTACAGGTATGTGATCTGCACTCTTGCCTATCGTAATCGCCTCCATTAACCCCccaatgatgatgataataactCACGTAAGAAAATCATGACCAGAGCCAGTTGACTTGTTATGAACTGCCATTTTGGGCACCATTGGAAATGACCACCCCTTTCCCTATGATAAAGTGTATTGTGGCACCTGTTCCCCATCCTAACAAGGCCTTATTAGGTGCACCCACTCAATAAATCAATACTGTTGTTGCTAATCCTGGTATCATGCAATATTAGGTCTGAATCCTGCATCTGCTTTCAGGTTACATTGAATTGTATGGAGATTGTTATTGCTTTTTTGTAAGTGAAATTTGAAAAGACtacaaaaaaatatttcaaaTCTCAAATTCATGTAAATCTaaattatccccccccccccccaaaaaaaaatgtaatgcagGTTTACGTACCATTTTCTCACCTTCACGTTTGAGCGTTTATGTAGAAAGGCCATCTCATTTATTGAAAGCATACAGCTCACCACATCTCGTCAGTTGTGTTTTAGGAGCTGCAGCTAAGAAGTGTCTCCTAACGCCCACCACTTCTGTTTCAACAGCACAATCATTTAGCACAAGAGGGTTTTTAAAATTCACTGCATTTTGATCTACATTCATTTCGCCACTTAAATAGACTTTCAGACGTGTGCATATGCCTTACATTAGTGCTCGTTTTCAGCCAGGTTTCCGTCTGAAGAGGATACTGAAAGTGTTTAGCTGTGTTCTagttctctgtccttctcccaaAGTGCAGACAggcatttactgcactgctggagctagaaacaagtAATCTGTACGCGACTAAACTCTGATTTGAAGTGCACACATGTTCACTCCCTTTCATAGATTTAAAATGAATAGACGAGTGTAAGGAATACTTGCACAAATCCAGTGCTTTTAAACACAATGGAGTCAACAAGTGCACACTTACAGTAAAAAGGAAGGGAATTGGAATTCATCCATGTGACTCATCTTTTGTTCCCAGTGGCTCCTGAATTTGACTCTCATGCTATGCCACTGGATGACACTCAGCAGACTACACTCACATCCTCATCCATTTAGTTAATTGCTGATCTATAAGATATCTTATCAATTTTATATTTATAAGGTGGAATTGGCTGTTGGCATTTATACAAGAATACAGTATTGTTGTAGCCATGCCTTTTACTCTGCTACAATACTGTTATAGATGCCAATACCAGACAGGTGTAAGAAGTTActgtggaatatatatatatatatatatatatatagtcaaaACCCTCTTATCCAAGTAAATCTGCATAGGTAGTGTTTCTTTTTAGTTCAAATGAAAGTTGTAACTGAGAGGACGAACAATAAATCTCATTACCATATTTGCTG

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0030496 midbody cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476730 lncRNA upstream 78587 58952502 ~ 58952877 (+) True G420665
TU476728 lncRNA upstream 80130 58951093 ~ 58951334 (+) True G420663
TU476724 lncRNA upstream 83787 58947469 ~ 58947677 (+) True G420659
TU476717 lncRNA upstream 88824 58942241 ~ 58942640 (+) True G420656
TU476716 lncRNA upstream 88904 58942241 ~ 58942560 (+) False G420656
TU477183 lncRNA downstream 80183 59116486 ~ 59116704 (+) True G421069
TU477194 lncRNA downstream 86001 59122304 ~ 59122532 (+) True G421080
TU477207 lncRNA downstream 94882 59131185 ~ 59133005 (+) False G421090
TU477206 lncRNA downstream 96210 59132513 ~ 59133005 (+) True G421090
TU477252 lncRNA downstream 133730 59170033 ~ 59171379 (+) True G421133
XM_021603563.2 mRNA upstream 18382 59007333 ~ 59013082 (+) True LOC110524171
XM_036977973.1 mRNA upstream 45875 58953813 ~ 58985589 (+) False LOC110522980
XM_036977972.1 mRNA upstream 45875 58953817 ~ 58985589 (+) False LOC110522980
XM_036977974.1 mRNA upstream 45875 58953827 ~ 58985589 (+) True LOC110522980
XM_021603562.2 mRNA upstream 90997 58936825 ~ 58940467 (+) True ndufa7
XM_021603566.2 mRNA downstream 2084 59038387 ~ 59050166 (+) True LOC110524173
XM_021603574.2 mRNA downstream 103134 59139437 ~ 59141452 (+) True fam43a
XR_002473551.2 mRNA downstream 130950 59167253 ~ 59169330 (+) True LOC110524179
XM_021603576.2 mRNA downstream 314476 59350779 ~ 59358665 (+) False srsf11
XM_021603575.2 mRNA downstream 314484 59350787 ~ 59358665 (+) False srsf11
TU476694 other upstream 87247 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 614688 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 1131816 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1664127 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 2073299 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 1657954 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 2685234 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3069220 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 3246849 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 4008787 63045090 ~ 63051530 (+) True G425224

Expression Profile