RNA id: XM_021603566.2


Basic Information

Item Value
RNA id XM_021603566.2
length 8585
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC110524173
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59038387 ~ 59050166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTACGGGGGTCTAGTCAGTTATTTCTCATGCTTTGGGTCGATAGAGCAGAGAAAAGTAATAAATGGGAGATTTTTTCTCCTTAAAGAGTCATACATGTATTAAGCAAGCAAAGAGAGGGTCTGATAGTTGTTCAGTTTAAATGCACAATATTGTGAACTGCATTTAACCAGTTCCTTGTGGAGTTTCTTGAATATTATGTAGTCGTTTGATAAATTAGGCTAGGTTTCTTGTCCCGGGGGCAAGTATCTGCGGTGCATTAGGACACTGTTAGACGGAAATGTAAAATCAATTGAATAATATGGGATTCTAATAAGTTTCTAAAATAAATAGTACTGTGGATGTTTTACCGTCACCACATTCTACAAGCTCAGTCGGAAAATACACAAGGCTAAATAATGACAAAGGTTAGCGTAcacacaaatgtttttttatattgTATATTCAACATTGATAACTCAGTTATGGTTGACAATATAGGTTTATATATGTCCTTAGTGCCTACATCCGTAGCAATGGTGATATCCCTGTTTGAGGAAGATTCCTATCAGAGGGGCTCATCTGGTTTTGACAGGAGCTCTCCAGTCTCACTTTGGGAGACTGTTATACACATGTCTCCTAAAAATGTTTTATCTGTTAGAACTTCTATGTTTGACTTGGATCTTTGTTAGCTTTTGCCGTAAAATGTAGAGCATGTTGTTCACTTAAAATGATGTCTTATTGATCAGATACTTTACAGCTTTTAAGAGGGAGTAGTGTCAATGTCTTTTGTATAGTATTCCTTCATGTTTCCTCTGCTTTCTTACAGATTATTTTTGTGTGAACCCAACGCTCTTTTAGCTGGATGACTGTAATACACCATGAATATGGATGCAGCAACCGGCATAACCTGAGGAAATAGGTTATTAATAATATTATGGACTGAATCTTATTTTTGTTCTTCAAAAAATGATCAACAATGCATTGGCTATTGCACATGGTTATACCAACATAAGCAGTTGGGTTGAAAATGCCAAACATTTTCATTTGAATCTGGATTCCTTCCTAGCAAAGTCTTTGCAGTTCATCAATGTAAACAGTGTTACAAGTGACAAGATTTTCCCATTAAGTTCATGTTCAACTAACTTGCCAGCATCACCGTTTTTTCTAAATTCATAAAATTATTCAACAATACTTAGTTAACTAACAAAAACTGAATGTTGATTAAAAAGACAGTTAAAAACAactaaatatgaataaaatataCAACATGTACAGGAAACATTAAGTTAAGCTGCTATCGGATTGTGGGGCACCCCCCAAGTCGGTGCTACACATTGGTAGTACGGAGgagtagctagccagctacttacaGAGTCCATACGGGGAGGCTGAGGACGCCGGGGACAGCGAGCTGTGGTAAAGGCTCCGGAAAAGTCTCGGACTGACTCTGATATGACCACCGACCTCCCTTGCTGTGACCAAaatgctccctccatcccttcaccgCTCAGACTGTTCAACCTCCATTCTTGCCTCAACTCCCTGACTTTTTGATCTTCTTGtatcttgttttgttcattgaAATTTGGTTCCTTGTATGTGTTACTGCAATTCAGCTTTTAGCTGCCATAGTACAcaggaaattaaataaataattgtcaTCATCATACATTATGAGGCTGGTTCTGGTCAAACCCACCAATGCAACACGTCGGCTCGATTCAACAGGAGACGCTTGCAACGACCAAGACCCGGATCACTGCAACTCTCGAGGGCAGTCTCTACCAGACAAAGCCCCTGAGGTCATGCAGTATCGCTACTCTGGAACTGCCCTCCAGCCCCAAATGTCAATACCAGAGCAGAGCAATAACAGCATTTCCACTTCCACTTCTCCGCCACAGGCTACTCCAAATGGAGTCGCTCCACCACGGAAATCTCCACCATTAAAAACTACACTGtcaaaactgagcaatcaagaTCTCCTGCTCTTTTGTAGCCAGGTGGGTGGTACTCTTGAACTGCAGCGTGAAAGCCCACTGTTGGCTGAGTGGCATGGGACCACGGTGGGACATCCTGATGCGGACTGTGGCTCTGTTTGCTATTCTCCTAGTACAAAACATGGATCAGAGGTGGCCGGTTTCCAGCCACAATCAAAGCAGGGCTTCTTGAAGGACTGCCTCTCCACATTCTCCAAGAAGGGAACTCCTCCTTCTCTACAGTATACCCACTCCTATCCTCAGAACTCCCTGGTGTCATCGTCATCCCGGTTTTTCAGGCAGAAACCAAGTCAAGAGGATCCCTCAACAGGGACTGTCAATCCCGAGAAGGATAATTTCACATCCCGATGCAGAGGAGAAGACGGGCTGAAGGAGTATAATCAATGGCAGCAGCAGACCCATAATCGTTTCAAGATTAAAGAGCATAACCTACCACCAGTCTCGACTACTGAAAAAACAGAGCCTTCACTGAATATACCTCTGAATGGCAATGAGTCAAGTAAAGTTAGGCAGCTCTTGGTTTTGTCTCAATCTCAGGACCAACAGAAACTTCCCTTAGATACACAACACCAATGGATGCTAGGAAACGGTTTACCTAGCTGCTGTGCCAATGAGTGTGGAGTGCATTGTGGAAGCCAACAACCTTACTTAAACCAGCAACTACAGCAACACCCTCAAAGGCAGCATTGTTGTGACCATCTTAGCATTCTAAAATGCCATCAGTGTTCTCTCTACCCATCCAGCAGCAGCCCACGAGGGAAGAATTCATTCCCGGCTACTAGCGACAAAAGCAGTGCTCACTCCTCTTCCAGTAGCCAGCGGTGGCAGGAGAACCATCAACTAGAGGGAGAAGGGCAACGACAAGGGGAGCAACAGGTACATCCTCATACCAAAAAGGTTGGCCATGTTGGTTCAACGCCTTCCCTGTCCAAGAGCAGTAGCCCACTCCCTCCCGACACAGTAGTGACAAGCGCTAAATACAATGGGGATGTTGGGAGACCCCTGAGCAGCTTAGGAGCTTCGCCACCCAACCTTTCAGAGCTGGACTCAGCAAGACAAGAGCCCCTCCAGACTCTTCACAGGTCCGTCCTGGAGGAGGTGTTCTCCAAAGGCCTCAGTGAGGACAATAGTAAGGGCAACAGCGAGGGAGGAGGAGACGCGCCACAGAAGAGGACTAAGGACATTGGCTACAGATTGGGCCAGCGTAGAGCGCTATTTGGAAAGCGCAAACAGCTGAGCGACTATGCCTTGATTTTCGGGATGTTTGGGATTGTTGTCATGGTGACGGAGACGGAACTGTCCTGGGGGGTTTACACGAAGGAATCATCATACTCATTTGCTCTGAAATGCCTCGTCAGCCTTTCAACTGCTGTATTGCTTGGCCTCATTGTGATGTACCATGCACGGGAAATACAGctCTTCATGGTGGACAATGCAGCTGACGACTGGAGGATTGCTATGACATATGAGCGGATCTTCCTGGTTGTGCTGGAGCTGCTGGTCTGTGCCATCCACCCCATCCCGGGCCAGTACATCTTCACCTGGACAGCCCGGCTGGCCTTCACCTACCCACACTCATTGACCAATGCCGACGTGGACCTCGTCCTCTCCATCCCCATGTTCCTCAGGCTCTACCTAATCGGTCGCGTCATGCTGCTGCACAGCAAGCTTTTCACGGATGCCTCGTCACGCAGCATCGGCGCCCTCAACAAGATCAACTTCAACACGCGGTTCGTCATGAAGACCCTCATGACCATCTGCCCCGGCACGGTGCTGCTGGTCTTCAGCGTCTCTTGTTGGATCATCGCAGCGTGGACGGTGCGTGTATGTGAGAGGTATCATGACACACAGGAAGTGACTAATAACTTCCTTGGGGCCATGTGGCTCATCTCTATCACCTTTCTCTCCATTGGTTATGGAGACATGGTCCCTCACACTTACTGTGGAAAGGGTGTGTGTCTGCTGACTGGAATCATGGGGGCTGGCTGCACTGCCCTGGTGGTTGCTGTAGTTGCCAGGAAGTCTGAGTTGACCAGAGCTGAGAAGCATGTTCACAACTTTATGATGGACACTCAGCTCTATAAACGAGTGAAAAACACAGCTGCCAATGTACTCAGAGAGACATGGCTTATCTACAAACACACCAAGTTAGTCAAGAAGATTGATCACGCCAGGGTACGCAAACATCAGCGCAAATTTCTGCAAGCCATTCACCAACTGCGCAGAGTCAAACTGGAACAGATGAAACTCACCGACCAGGCTAACACACTTGTGGATCTAGCCAAGACTCAGAACATGATGTACgacctggtgtctgacctgcaGCTGCGCAGCGAGGAGCTGGATAGGAGGATTGGTAGTTTGGACGACAAACTGGACTCCATCCTAGTCAATCTGCAGGCCCTACCCAGCCTGCTCTCCCAAGCGGTCACACAGCAGCACAAGGACTTCCTGGATGGCTTGGCCCACCGTGTACGGAAAGCCTCGTCGGAATCGGAGCTTCACTGGGTTCCCGCTAGGTGCCAACGGTCCCTTTCCACTGCACCACAGACCATTCCTTACAGCTGACAGCCTAGCCACATTTCCACGATTGTGACCTTAAATGGATTTATCCTGGATTGCCAGTCTGTGTACCTGGGCCATTCTTGAATAGAGGTGGCATTTAGGCATGGCATTTTAGGAAAAAGTTACTTTTTTGTGCAGTCCCCCCAAAAAGGGAAAAATGCTAGTCTTAATAAAATCCCATTACACCATCGTGCTAGGGTGGCTAATGCTGCTCCCGTATTAGCCACCCTAACTATTTCCCGCTACGTTACCTGCGTTGGGACACCAAAGACCAGACGACATAATTTGGCAAAACTTGGGGCTGTCCCATTAAATTCTAAACGAAGCTTCAGATTTATACCCCGTGACGTATCTGGGTTTCCCCTTGTCTGTGGTGTAACTGCCTGCATTATACCTGTCGAATCAGTGAGCTGCTTTTGTAGTAGTCATGAAACCACACCCGCTTTAGAAGTTTAGAACGAGAAACTgcaggctatatagaaataatgacaattacatttAAAATGATTAAATATCAAGGATTTATCAGACTAAATCGGTGTACATTACATCACACATTCCAGTGTTTGAACTTGTAACAGAAGCATGGAATTTCTACTCAGTTCATTCCATGGCAATGTCCGCGATAGATAACGTCAAGAGCCACTTGTAGATTTGACAGGTCTAACATTACACATCTGACACCGCCTAAACAAAAGCAGTGAAAAGCCACATATGCATTTGTCAGCTAAATGTGGGTTACCGCTGATCTGATTGCATCTTGGCCTAAGAGAGTACCaagagtcataatacccataaaacctagtggtcaaacagggaaatggttccaaatgTTTTTTCCACCATTACATTTTTCCCCATAGTTGATTTGAGAAACACTTCAAATTAGGGTTGCGTTCCATgcaggcttaccctggcgtgacattttgataaccatgtaaatctctctaggacaaggtgacatCCATATATTCGCCTGTATTTACCTCCCCAAAATTAAaagctaattagctgctaatgtggctattataaagaactacaaatgccataatgatctggacgagactgccgaatcgaggcaaaggtaagaatctctggattaacgaTGTGATGTttgctaaatgtagtaatgaataaataggctacatttctttaaaaattGACAATCTGtaaactgtcttgtgcaagttttacaTTGGACAATATAGGGATTTGTAGTTTGCGTGGGAAAAATGAATGTTGgtaaaacgattggaaccattttcctgttagaccactaggttttatgggtattctGACACACTGTGGGGCTCTAGTATGGCCGGGATTCAATGCGATTGCGCTTTGTCAGCAACATACCTTTTAAACATACCTTTTAAAGGCGCATGTGTTCCTGCATTCATGGAATCCGCATCACGGAGGTATAATAAGAACAGTCTGCGTTCATGGTAGATGCTGCATATGTCCGCTCAATCGCAAACTACCTGTAAATGGCACATTGTCGACAAAGCGCGATTGGATTAAATCCCGGACTAAatttttttgttttactataaagtagtcaaacatgtttttttgaagaccacatttattgaaaagacaatcaaaagaaatctaAAGAAATTAGAAACAATCCTTAGTAAAGAAATCATATATATAAATTACAAGCAATCTACATCTctgcaacaaaaaacaaaaacatttccagAGAAGAATCTTACTGAGGGTTGGGAGATTAGATTTTGTGGCAACAAACAAAGACAGAAAATTTGAATAAAATGTTAACCAACAGGCTTTGTTTTGCATTCAGTTAGGTATTAATTTTATTATAATTCTCTATATGTAACAAATACACACATTTCCCTGAGGAAACAATTCCACTGGAAGTTCTACAGACTCAGTGGCTGATATGTTCTAAATGCCTCAATGGTTCGTTTCAAACACTTAATAAAAAAAACAGGTGATTACAGATGTCAACAACTGGTATAATGTACCTTTTAAGAGCATAGAGTTTCAGCATACACTTCATTGCTATGATATAGCCGTATCTGGGTAAAATATCATTTATCAGAATAACAATTTGTAAGTTTTAGGGTTATCATTATTGATTCAAAGTTGAAGCATTAAGGTGCATGGTTATGACAGTTGAGAGAATCATTCCCCTAGCAGCAAAACAATCCTCTCTAGAGGAGAGGGGTTGTGATATCCACAGCAATGCACACTCTTCAGCCTGTACATTGTGATTTTACATACAGACTGTGTATAAAAACTCAAAGCATCATTTACATATTTTAGGTGCCAGGTgctgaaatgaacattcaacTAAAGATTGTCAGAATATTTCTGCCCAGAAACAATATTTGTCAAACTGAGGTGCcaatacaatgccttcagaaagtattcacacccatttactttttacacatttttgttgGAGTGGGAGTTTTTGGTcaacaatccacacacaatactcttgtcaaagtggaagaaaaattataTATTTATGAAAAATAGAACACATAtttcttgattagataagtattcaataaatgttagaatcaccttcggcagcaattacagctgtgagtgttttggggtaagtctaagagctttgcatacctggCTTGTACAATATTAGCTTATTATGCcatttaaaattcttcaagctctgtcaaattggttgttgatgattgctggacagccattttcaagtcctgccatagattttcaagcagatttaagtcaaaactgtaactagtccaatcaggaacattcaatgttgtcttggtaagcaactgcagtgtatatttggctttgtttttttaggttattgttgACAGGTGAATTTGTCTACCAGGAAAGCaaatcaggttttcctctaggatttttcctgtgcttagctctagtCCATTTATCTTGATCTGAATTAACTCCCGGTCTTcaccaatgacaagcataccctaacatgatgcagccaccaccatgcttgaaaatatgaagtgtggtactcagtgatgtgctgGATTTTGTACCAAACAAAACACTTTGTATATAGATCAAAAAGTTCTTTACCAAGTGTTTTGCAGTATTgcttcagtgccttgttgcaaacaggatgtatgtttttgaatgtttttattctgtacaggcttccttcttttcactctgtcaattaagttagtattgttgagtaactacaatgttgttgatccatcctcagttctcccatcacagccattaaactctaacaaTTTAAAAAATCAGTATTGGTCTCATggcgaaatccctgagcggttttccttcctctccggctacAGAGATAGAAAGAAcacctgcatctttgtagtgactgggtgtatttatacaccatccaaagtgtaattaataacttcaccacccTCAAATATTGTCTGCTTTTTGTTTTCTACCAATAGgcgcccttctttgcgaggcattggaaaacctccctggtctttgtggttgtatCTGTGCTTGAAAATTACTTTTGAACTGAGGGACCttccagataattgtatgtgtggggtagtcattcaacaataatgttaaccactattattgcatGCAActtaagcacatttgtactcctgTACGTATTTAGGCTCGCCATATGAAATGGGTTGAATAGTtggctcaagacatttcagattttcatttttaattaatttgtcaaATAAATtctaaaaaacaacattttacattatggggtattgtgtgtagaagtAAAGGGGTgggactttctgaaggcactggataTTATATGGAATCCCTTATTTCAAATCATTAGATTAATAGTAACTGTTTTCAGAGTACTGACAAGATATATTCCTCACGTGACTAGATATTGGTCGTAGGGCAAGGAGTTTCACACCTCACCAAGCAACATTCCAGGCTTTAAAAGTATAACTACAGCCCAGTTTTTCCTGGTTAGGTCACAAGGTCAGAAATAACTTCTGGCCCTAGACAATCGCACTTCATCATTGGCTTAAATAATAATTATAGAAATGCCCAATAGAATCATGT

Function

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0016286 small conductance calcium-activated potassium channel activity molecular_function

KEGG:

id description
K04942 KCNN1, KCA2.1; potassium intermediate/small conductance calcium-activated channel subfamily N member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476730 lncRNA upstream 85510 58952502 ~ 58952877 (+) True G420665
TU476728 lncRNA upstream 87053 58951093 ~ 58951334 (+) True G420663
TU476724 lncRNA upstream 90710 58947469 ~ 58947677 (+) True G420659
TU476717 lncRNA upstream 95747 58942241 ~ 58942640 (+) True G420656
TU476716 lncRNA upstream 95827 58942241 ~ 58942560 (+) False G420656
TU477183 lncRNA downstream 66320 59116486 ~ 59116704 (+) True G421069
TU477194 lncRNA downstream 72138 59122304 ~ 59122532 (+) True G421080
TU477207 lncRNA downstream 81019 59131185 ~ 59133005 (+) False G421090
TU477206 lncRNA downstream 82347 59132513 ~ 59133005 (+) True G421090
TU477252 lncRNA downstream 119867 59170033 ~ 59171379 (+) True G421133
XM_021603564.2 mRNA upstream 2084 59026005 ~ 59036303 (+) False LOC110524172
XM_036977975.1 mRNA upstream 2084 59026177 ~ 59036303 (+) False LOC110524172
XM_021603565.2 mRNA upstream 2084 59031464 ~ 59036303 (+) True LOC110524172
XM_021603563.2 mRNA upstream 25305 59007333 ~ 59013082 (+) True LOC110524171
XM_036977973.1 mRNA upstream 52798 58953813 ~ 58985589 (+) False LOC110522980
XM_021603574.2 mRNA downstream 89271 59139437 ~ 59141452 (+) True fam43a
XR_002473551.2 mRNA downstream 117087 59167253 ~ 59169330 (+) True LOC110524179
XM_021603576.2 mRNA downstream 300613 59350779 ~ 59358665 (+) False srsf11
XM_021603575.2 mRNA downstream 300621 59350787 ~ 59358665 (+) False srsf11
XM_021603578.2 mRNA downstream 300626 59350792 ~ 59358665 (+) False srsf11
TU476694 other upstream 94170 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 621611 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 1138739 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1671050 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 2080222 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 1644091 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 2671371 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 3055357 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 3232986 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 3994924 63045090 ~ 63051530 (+) True G425224

Expression Profile