RNA id: XM_021603578.2


Basic Information

Item Value
RNA id XM_021603578.2
length 2440
RNA type mRNA
GC content 0.47
exon number 13
gene id srsf11
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59350779 ~ 59358665 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAAACGaaaggctgtggtctatcttggtttagatATATGCATCTTTGGTAGCGTGCTAATGGCCGTGGGAATTCAATTGTGTAGCATTAGCTAGTGGAAATGATTGTTGTTTGCTTGCTTGACTGCACAATTATATGTTACGTTCTTTAGATGCTAAATTAGTTGGGTTGTTACATCTAGCTAGACGTCTGTGCGTTTCAAATTAACATCTAGTCGTGGAAAATGACGAACGTTATTCAGGTGACAAATGTCTCTCCGAGTACCACCTCCgaacagatgagaactctcttcgGGTTTCTTGGAAATATTGAAGAACTGAAGTTATTTCCACCAGATTAAGGTAGGAATTACAAGACGTCTTGATCATCCCTCTGAAGCTCTCATGGCAAAGACAAGAAAAGACTACAAGAGATGCAACGTTCTTTCATTGCTCTCTCTTCCCAATTTGAATCTTCCTTGCCTGTGACTTCACGTGTCTGTTTTGTAAAGTTCCTTGAACCTGAGTCGGTTGGAGTGTCCCAGCATCTGACCAACACTGTCTTTGTGGACAGAGCCCTGATTGTTGTCCCATTCGCAGAAGGAGTGATTCCTGATGAGTCTAAAGCTCTATCACTGCTGGCACCAGCGAACGCCGTGGCAGGATGCATGCCTGGAGGAGGCCTTCTCCCCACTCCGAATCCTTTGGCGTCCATGGGAGGCGTGCCTCTTTCAGCTCTCGGAAATCCGAACATGGATCACATGGCTGCCATGGGCATGTCTGGCAACATCAACCCCCAGGCCCTCTCTGCTGACTTTCTGAAGCTTATGCAGTCCATGGATCCTACTAAGATGAATCCAATGGCTGCTGGTATGATGATTAATCCTGGTATGAAGAATGACTCCAACAAGGAGATAGAGGAGGCCATGAAGAGGGTCAGAGAGGCCCAGTCACTCATATCTGCCGCTATCGAGCCAGGAAATAAGAAAGACGACAAGCGCAAACATTCCCGCTCCAGGTCCCGGTCGAGGCGGAGGAGGTCCAGGTCTCGTCACAGGCGATCAAAGAGCAGGTCTCGACGGAGGTCCCACTCGAGGAGTAGGAGGCGGTCGAAGAGCCCCCGCAGACGGAAGTCTCACTCCAGAGAGAGGGGTAGACGCAGCAAATCCAGGGATAGGAGGAAAGAAGATAAATCCAAAAAGCGCTCCAAGACGCCGCCTAAGAGCTACAGCAGCACCAGGAGGTCTCGAAGCATCAATCGGAGACGTAGAAGAAGCCGCAGCGCCTCTAGGTCACCAAAAAAGTCCAGGTCCCCAAAGAGGAAACTGTCCAGGTCCCCTTCCCCTAGAAGGCACAAGAAGGACAAAAAGAAAGACAAAGAGCGAGAGAAGGACCGTGACAGGGGGAGGAAAGACGTCAGAGATCGGAGCCAAGACGAAAGAGAACGCTCCACTAGTAAGAAGAGCAAAGACAAGGATAAGGACCGAGACCACAAATCTGACAGTGAGAAAGGAGATGTCAAGAATGCTTTGCTCTTGAAGGTGACCAGGGATTACGATGAGGAGGAGCAAGGCTATGACAGTGGAAAAGAGGTAGAGGacgaagaggagaggaagagcgaCTCTGATTCTGCGTCTCCCCCGAAGCCCCAGGAGTCTGACGAGAAGCTTGCAGGGGAGAGCGGCAAGAAGTCCAAACAGAACGGAGATGACCACCATGATGAGGAAGACATGGAGATGAGCGACTGAGTACACCCAGGGAAACCCAGCCAGATGATGTCACTGAAAACCGACAGGCTCCATTCCCTACCGTTCTCTTTTTAAAGGCGTCTAGATAACGTGTCTGATCTTTTAAATGAATACTTGTGGGAATCTGGTGGGTTGTAGTCCTATTGGGGAGATGTACAGTTTTTAGAGGTATAGAGACACTTTCCATCTCTAGACTGGTTAGGGGAAATATTGTTCCTGTTTGAAATAGCCAGTTTATTTCTGCCTGTGTCTGGTGAGCATGTGTAGGAAATCAAAATATAAAATGTCAAATTGCTGTACTTTTATGTTGAAGGGCCTGTTGAATGTGAGGGATTTTGAAAGTGATTTCCTTTTTGGGCCTCAACGATTTTATTCATCTTGAACATATAGGAACTGTTTTCTCCTAAATGACTCACTGAACTTATGTATACTTAAACCTTTTACAGGACAGGGGTTGGCCCCTCAACTACTCAGACTGTTAAATTGTTTTTAGCCTGGTACCATTCTGGTTTCGGTGTAGCTTTCTATTCTTTGTTGTAATCTTGCCAAATTGACTCAATCTGTAAAGCACTTAATACTGTTGTAGACATACCCTTCCACCCGTGACGATATACTGTAGATCCAAATCAGTGTTTGGATTATTATGATGGAACACCCTGTACTGTCTACATGTTTTACAAAGGAAAGTCTATAATAAAACGTGGTCAAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477490 lncRNA upstream 3261 59340051 ~ 59347531 (+) True G421362
TU477313 lncRNA upstream 112953 59233537 ~ 59237839 (+) True G421188
TU477252 lncRNA upstream 179413 59170033 ~ 59171379 (+) True G421133
TU477207 lncRNA upstream 217787 59131185 ~ 59133005 (+) False G421090
TU477509 lncRNA downstream 417 59359082 ~ 59359566 (+) True G421376
TU477505 lncRNA downstream 1251 59359916 ~ 59361000 (+) True G421372
TU477657 lncRNA downstream 306059 59664724 ~ 59665892 (+) True G421517
TU477767 lncRNA downstream 351952 59710617 ~ 59712799 (+) True G421614
TU477769 lncRNA downstream 359360 59718025 ~ 59718250 (+) True G421616
XR_002473551.2 mRNA upstream 181462 59167253 ~ 59169330 (+) True LOC110524179
XM_021603574.2 mRNA upstream 209340 59139437 ~ 59141452 (+) True fam43a
XM_021603566.2 mRNA upstream 300626 59038387 ~ 59050166 (+) True LOC110524173
XM_036977975.1 mRNA upstream 314489 59026177 ~ 59036303 (+) False LOC110524172
XM_036977979.1 mRNA downstream 97699 59456364 ~ 59463907 (+) True LOC110524183
XM_021603594.2 mRNA downstream 232395 59591060 ~ 59595336 (+) True LOC110524186
XM_021603598.2 mRNA downstream 285118 59643783 ~ 59661241 (+) False LOC110524187
XM_021603596.2 mRNA downstream 285119 59643784 ~ 59661241 (+) False LOC110524187
XM_021603597.2 mRNA downstream 285119 59643784 ~ 59661241 (+) False LOC110524187
TU476694 other upstream 406575 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 934016 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 1451144 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 1983455 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 2392627 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 1335592 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 2362872 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 2746858 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 2924487 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 3686425 63045090 ~ 63051530 (+) True G425224

Expression Profile