RNA id: XM_021603585.2


Basic Information

Item Value
RNA id XM_021603585.2
length 9530
RNA type mRNA
GC content 0.52
exon number 43
gene id LOC110524184
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59468780 ~ 59563676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTAGAGTAGCTGGCTAGCAGTTATTAGTCAGCTCGATAAACCAGCAAGTAGGTTTGAAAAGGATGTACAATTCAACGTATTTTACTACAAGACAGGTTTTAATATTCGGGTAAGATAGCAATAGCAAACAGGTACACCACCTTGTAGATACATAACTTTGCGGGTTGCTTATGTTTTTGACTGTTAGCTAATTTAATTGCGTAATTTTACTGCTTGATTCTGAACGACAACGTCCTTAGCTAacaggctaacgttagctgaaTGTATTTGGTTAGCCAATCTTGATTTAATCAACAAGGGAACTACAAAAGCAGCTTTTTAAATTATCCGTCAGTTGTATGCGGGAAATACAATAAGGAAATGAGTCATCTTAGACGATGAGAAAAACAACTGAACAAGGTGCTGGGTGGTGAGAGAACAGAAGGCAGTGTGGACGGCATGCTGAGGCGACTACACCTGCCCCAGAATGAGTGTCAATGATGGCGAAGGTGGAGCAGCTAGCAAAGATGGGCGGGCCTACAGCCTGCAGGTTTACCCACGGCTCTCAGCGGACTGCCCACCTTGCTGTTCCCTCAAGGTGCCCAAGGATGCCACGGCTGCCTCTGTCATCCAGGACGCAGCCTCGGCCCTGGGTGTGGACCCGCAACGCCTCTACGTGCTGGCCGAGGTGAAGGAGTGCGGCGGGGAGGAGTGGGTGCTGGAGTCGGGGGACCTCCCCGTCCAGAGGGTCCTGCTGTGGCCTCGCAAAGCCCAGGAGCAGCACCCCCAGAGCGAGGGCTTCTACTTCGTTCTCCAGGAGAGGAACCGCGATGGCACCATCCACTACGTCCACCTTCCCGTCCTCTGCAAGGAGCAGGAGGCACAGAGGTTGGCGGCCAGAGGCTTCCTCCCCCCGCGCCAGGAGGACTTTGATGACCTGTGCAACCTCCCAGTGCTCAATGAGAGCAGCATCCTGGATAACCTGCGCAACCGCTTCCACAAGAAAAAGATCTACACCTATGCCGGGTCTATCCTCATTGCCATCAACCCCTTCAAGTTCCTACCCATCTACAACCCCAAGTACGTCAAGATGTACGAGAACCATCAGCTGGGGAAACTGGAGCCACACATCTTTGCCATCGCGGACGTGGCCTACTACGCCATGCTAAGAAAGCGGGTAAACCAGTGCATCGTTATCTCTGGGGAGAGCGGCTCAGGAAAGACGCAGAGCACCAACTTCCTCATCCACTGTCTGACTGCCCTCAGCCAGAAGGGCTATGCCAGTGGAGTGGAGAGGACCATCTTGGGTGCTGGGCCTGTGCTGGAGGCGTTTGGGAATGCCAAGACGGCCCACAACAACAACTCCAGCCGTTTTGGGAAGTTCATCCAGGTCAACTACTTGGAGAGCGGGGTGGTGAGAGGggCAATCGTGGAGAAGTATCTCCTGGAGAAGTCTCGCCTGGTCTCCAGAGAAAAGAATGAGAGGAACTACCATGTGTTTTACTATCTACTGGTGGGAGCGTCCGAGGAGGAGCGCAGGGAGTTCAAACTCCTGCAGCCTGAAGATTACCTCTACCTCAAgcagGAAAACTTTAAGATCGAAGATGAAGAAGACCTGCGTCATGATTTTGAGAGGCTGCAGCAGGCCATGGAGATGGTGGGCTTCCTGTCTGCCACTAAGAAACAGATCTTCTCTGTGCTGTCGGCCATCTTGTACCTGGGCAACGTGACGTACAGGAAGACGTCTACAGGCCGAGACGAGGGACTGGACGTGGGACCACCGGAAGTCCTTGCTACCCTCTCAGACCTGCTCAAGGTGGAAGAGGAGTTGCTGGTCGAGGCACTAACTAAGAGGAAAACGGTGACAGTCAATGACAAGCTGATTCTGCCCTACAGCCACAGTGAGGCCATCACTGCGAGAGACTCCATGGCCAAGTCTCTGTACAGTGCACTGTTCAACTGGATTGTCCTGCGCATCAATCATGCACTGCTCAACAAGAAAGACATGGAGGAATCTGTCCCGTGTTTGTCAATAGGGGTCCTGGACATATTTGGCTTTGAGGACTTTGAGACCAACAGCTTTGAGCAGTTCTGTATCAACTATGCAAACGAGCAGCTTCAGTATTACTTCAACCAGCACATCTTCAAACTTGAGCAGGAGGAGTACCAGGCGGAGGGCATCACCTGGCACAACATAGACTACACTGACAACGTGGGCTGCATCCACCTCATCAGCAAGAAGCCCACTGGTCTCCTGTACCTACTGGATGAGGAGAGCAACTTCCCCCATGCCACTGATAAGACCCTGCTGGCCAAGTTTAAGCAGCAGCACCAGGAGAATAAGTACTTTGTGCCCACGCCTGTGATGGAGCCTGCCTTTGTCATCCACCACTTTGCTGGGAAAGTCAAATACCAGATCAAGGACTTCCGGGAGAAGAATACGGACCACATGCGTCCAGACATTGTGGCTCTACTGCGCAGCAGTGACCGGGCCTACGTGCGTCAGCTGATCGGGATGGACCCTGTGGCCATGTTCCGCTGGGGCATCCTGCGAGCCACCATCAGGGGGATGGCTGCCTTCAACGAGGCTGGACGTCGCTGGGCTGCCAAGACCGCAGGTGTGCAGCGCCCCACTTCCAGGACTCCTTTGGGGGAGCTGCAGAGGTCCAACACGCCTGTAGAAAGGATGTACCGACGGGCTTCTATGCTCGATTTCTACTTTGATCACTCTGACGAGCGCCCACTAGAGGCCTTCGAAGACATCTTTGCTAGCTATGAGAGTAAgaaGGACATGCATGCCCAGATAATCAGCTCCATTAAGGACTTGCAGCTGGATGGTGAGGACCCTCGCAAGCTGCTGCAGTCCTGGGGTCGCCTGCGGTTCCCTCGACACCTCCTTCAGAAAAACAAGAACGCGAAGCAGAAACAGATTATACCCAAGAGCCTGCTGGACTCTCGCTCCCTGAAGTTCATCGTCGGTCGGACCATCCACGACCGCTCCACCAAGTCTCTGCATCACCtcaacaagaagaagaagacccCCAGCATCAGCGCTCAGTTCCAGACCTCTCTGACAAAGCTGCTGGAGAATCTGGGCAGAGCAGAGCCCTTCTTCGTCCGGTGTATTCGCTCCAACTCTGAGAAGaaggAGATGTGTCTGAATGAGACCCTGGTGCTGCAGCAGCTGCGCTACACAGGCATGCTGGAGACTGTTCGCATCCGAAGGTCTGGCTATGGAGCCAAGTACACCTTCCAGGAATTCATCGAGCAATTCCGAGTGCTGCTGCCCAAAAACGCCACACCCTCCAAGCCAGAGGACATCTCAGCCTTGTTCCAGAGGATGAATCTAGACCACACCACCTACCAGATAGGCAAAACCAAGGTTTACCTGAAGGAACTAGAGCGTCAGCAGCTGCAGGACACGCTGCACAAGGACGTGATGCGTAAGATCATCTTCCTGCAGCTCTGGTTCAGGGCGCGCCTGGAGAGGAGGTACTTCTTGGAGATGAGACAGGCGGCCATCTTGATCCAGCGTGCATGGCGTAGGCAACACAAGGAGAGACGGCGTCAGGCGGCCACGCTGATTCAGGCCGTTTGGAGGGGCTCTAGACAGAGATCACAGTACCTCCGCAGGCGGACCAGCATCAAGAAGATACAGGCTCTGGCCAGAGGACACTCAGCACGGAGGAGGTGCCATTCAATacgggaggacaggaggaaaaaggaggatgaggaagaggaggccagGAGGGAGGAAGCTGCAGCTAGGCtagtgagagaggcagaggaggcaACCCAACTGGAAATGGATGCAGAGGAAGAGGCGttcaggagaaagaaagaggcagaGTGGGAGTCCGCGgagaggagggcgagggagaatgAAGAGGCAAGGCTGAGGCAGGCAGAAAGCGTCAATGAGGAACCTGAGACACAGGAGGAACTAGAGGCACAGGTGGTAGCTGAAAGGACTCTAGATGAGAACCGGCATTGGGACAAAGTGCCTGTCCAGGAcaaggaggagcagagggaggaagTGGAAGATGGAGAAGCTGCAGCTAGTTCACCTTCTGAGAAGGTGGAAAAGGGGAATGCTTCTGCAGTCTCCCAGCCTGATAAGGGCATCAGTATACAGGCTGAGGCTGGGCcccagctggaggaggagagccAGGCTGTGGAGGAACAGGAGCAAGCCCACTCCGAGGAGCCCGAGGAGGAGGGGACCACAGAGGCAGCTGCCCCCCACTCACCAGAGAGACACAAGGGGGCTCAGGCGGCTGCGGAGGCTACCCCCTCCGCAGACCCCCAGTCGGGGCAGAAGAAGCTACGTCCTCCCCCCCTCCACAAGGTCACAGCCTCCAGGAGCCAGGAGAAGAGGGAGCTTCGGCGCCAGCGGGGCCTGGagcacagccagagagagagtaaGCGGGTCGCCTCGGCAGCCACCAAGGAGGAGCCATCCCCTAAGGTCATAGATCAGGAGGCAGCCAGCCGAGCTGAGGAAAAGCCAAAAGGCCGGACGGATAGCAAGGAGATGGACCAGTACACCTTTGTAGCCTGGAAGAAGGACGACAAGGGGAAGAAGGAAGCAAAAGCCACCACCCCTGCTCCTATACGCCCCAGCACCTTACCCCTGAACCCCCCTGAGCCAATGGCTAACAGGAACGGCCATGAGGTCCTGGGTCCAGGCAACCTGACTCGGTACAGCCAACAAGACGCTATGAAGGAGAAGGCAGAGAAATGGAAGGAGGGGAAGATTGATGTACAACAACCAGAGAGTACCAGTCCTCCTGAGGCCCACAGCAAGGACAGGATAAAAAAATATTCACAGAGTGTTGGAAACTCGTCATCTTTTGATGCTATGTCCCCTGGATCGGCTGGTGCTACGTCAAACAGAGAGGTCAGATCACGTTACCGTAAACGTGCCAAACACAAACGTCGGCTAGCTCGTAGACGCTCGCCTTTTAAGAAAAGTGCAGAAGTGGACTATTGGACCTGCTTCCCTTTGTCCCCTGTGGGCCCAAGCAGGCCCTTGCACTCAAAGTCCATGGATAAGTCTCCTACAGAGGATGGGTCAAAGGGCAGCATGAAGAGGAGGACCCATGACACATCAGGCCACCAGGACACTGTCCATACTCATCCTTCCACCCCAGAGAAACCCACAGGGTTCCTGAGGAAGATCCTGAAGAAACGTCCCCATAAGGAGCCTCAGACCCCTGACGATGTAGAACTGACCATGGCCCAGGCCCTGATCGAACGAGGAGAAGACCCAGCTAGTGGAGGTCGGGCGGTGAGCCGGAACCCCACCATCAAGATCAGCCGGGCCACACGGGTCTCAGAGCAGTGGAACGCCTCACTGGACCGGGAGATTACCAACGCCAACGAGCTCCGACATCTGGATGAGTTCCTGGGGAATCAGgtgaatgACTTCCGCTCCAGGGGGAAGCAGTTGTCGGCAACCGAGCACATCTTCGTCACAGCCACCATGCAGTTCAGAGAGACCATCAAGGGAATGTACTCTCTCCCaAAACCCCACATTGGCTACAACGGTCTGATGCGTGGCTACCAGAACAAGGTGATCAGCCTGGCCGGAGACAAGCAGAAGGGTGAGGTGCAGCTGGTGGTCAACCTCTTTCAGTCTGTCCTGGACGGCTTCATACGGGGAGAGATCAAGAAGGAGGAGGCAGAACCAGCTAAGCCTGATAAAACTCGGAAGAAGAGGCGCAAAAAATACAAGAGTATGGAGAACCCTTTGGACCATGTGTTCAGCACGTACCAGGTTAACATCATGCAGTCCTGTGACCAGTGCAGCTCCTATATCTGGGGCATGGAGAAAGCCTGCATGTGTAGCTATTGCAAGATGGTGTGCCACAAGAAGTGCCTCTGCAAAATTGTCACAGACTGCTCCACGTTTTGTGTCAAAAAGAGTGATGAGGAGTCTGGAGGCCTGCACTTTGGGGTGCGAGTCTGTCACCTGACCAGCGACAAGAACACTGTTCCcatggtgctggagataatgcTGGAGCACGTGGAGATGAACGGCCTGTACACGGAGGGGATCTACCGCAAGTCTGGCTCTGCCAACCGCATGAAGGAGCTCCACCAGCTAATGGAGACTGACCCCCACGCTGTGTGCCTGGAGGACTACCCCATCCACACAGTGACGGGGCTGGTCAAACAGTGGCTGAGGGAGCTGCCTGACCCCCTCATGACCTTCATTCATTACAATGACTTCCTTCGGGCCGTAGAACATCCTGAAAAGCAAGAACAGCTACATGCCATCTACAAAGTGTTGGAACAACTCCCCACCGCATGCTTCAACACCTTGGAAAGGCTCGTCTTCCATCTAGTCAGAGTGTCTAAGGAGGAGTCTCACAACCGCATGTCTCCCAACTCCCTGGCCATCGTGTTTGCCCCCTGCATCCTCCGCTGTCCAGACAGCGCCGACCCGCTCATGAGCATGAGGGACGTGGCCAAGACCACCACGTGTGTGGAGATGCTGATCAACGAGCAGATCCGAAGCTACAACGAGAAGATGGAAGAGATTGAACAGCTGGAGTATGCCGAGGCTCTGGCCGTCAACCAGCTCAAACTCAAGAGGCAGAACACGCTGCACTGGCATTTGCCCCTCAGGTTTTCTGCTCCGTACAAAGGAGTGGTGGTGCATGAGAAAGAGTGCTCTGACCTGACTGTGGTCCCAGGGAACGATGTTCCGCTGGACTCCGATACGGAGGCTGAGAAGAACCTGATGGCGCGCATCAAGTCCATCAAACAGGAGAAGGAGGAACTAGCCTACAGACTGCCAGAGCTGGAGCAGCCTGGTTCAGACCAGGAGAACCTGGATTCTGAGGCGTCGGTGAGCTCTGAGAGCCTGCTGGACGAGCGCTGCCACAACTCTGAGCCTGAAGGCCAAGTTGACCTTGCCCAGAGACCTAAGGCCCCAGGGGGCATTCCTCTCTCTGCAACCTAGTCTCCTCTGGCTCCACCTCCCGGCCACAACACCATCGCCCTATCATCCTCGGCACGGTAAAGCTGCCGCCGGGCATCCACACGCAGCCCCCCGCTGCGGCCCTCAACCCCTCCTGCCAGCCATGGCTTCAGCCTGCTCAAGAGGCAGAAACAGCCCGCCCGACGCAAAGACGGCACCCAGTCCCTGTACATCAGTCCAGACAAAGGCCTGTtcccctctcccacctcctcctccatctcctccctctctagctcCACACCACAAAGTCTCCAGGCCACCAGCAAGGCCCTCAGATGCTTCTCAGACCCCGACATCCCCTATAGTGACCCAGCTtgacacagacaggagacagaataGAACTCGATAAGGAACTGGATATCTATGGTGGGCCCCCCTCGGTCTTGAGGATACAGTATGGAGTCTGTTATTGTCGCTGTTGCCATGGACACGGATCAtggatgtgtgtttatatacttGTGACTTATGCCTGGTAATAACAGGATGTGTCACCAAGCACTTTTTCTACACTTAATATATTGTTGTAGTTTTTTAAGAGACAAATTAAATCAAGTTTGCGCGGCCGCATGGACTCTATGGACAAATGTTTTCTTTTTTAAATACTTAGTTTTCATGAGGAAAAACTGCAGGCAATTGCACATTTCCATTCCACGGTCTCCTTATGAGAAGACCCAAACAGTttgctcaatgtaaagtcaatagTGCCTTGATTTGCACATTGTCAGTGTACAAATTCGTTGGTAATTTCTACTTTTAATATTCGAtgagggggggtgtgtgtgtatgtatctttGTATGATACTCTTGTGCTGGTTCAAAGAAATTGTAGCAACTCGAGACATGCTCGAACGAGGACCAAAACACTTGTGATCCAGTTATGGGGCCTTGAACAGCCTTCTCGTGGGAAATGGATTAACGCCACGTTCTTCCCTCTCCCACCATTTCCTCCCTGTATAGGAACTGCTTTCATTTGTCAAAGGGGAAATGGGAGCAGCACTAGCCACTTTCCTCCTGGATGAAAACCCGCTAAACCCTTGTCAAGGTCTGCATGCCATGTCTTATAAATGGACCTTTTTTAGATTCTACTTTCTGTAACGTTTCTGCAGCTACATACATATGGCTTCAGTCAACTGTACTGTACCTGCCACTATGTCAATCGGAGGGTCAGGATCACTATCGACTACAGAGGACCCCCTCTTCAAAAGTTGTTTGACATGTAATACTAATGAGTGATTCCTCACGGAACCAGACCAACAAACAAAACATGCTTTTGGGGGGTTTTCACGAAATGTAATCTATGGAATAgtcctttggaggaaggattgtcatatatttgacattttgtATCTAAAAGCATAATTTGAGAAATAATGAATCAAAGTTGGCATATGTATGTCATTTTGGACCTCACCTAGGCCTCCTTTTAAAGCTCCAGGATGTTTCATCTGTAGATGCGAAAGTAAAGATTGGTGTCATATGAAGCTCTACCTCTTGCTCTGTAATATGAGTAGTATTTTAATTTCAATAAGACATTTTTTACATTAATTGATGAATATTGACAAATTGAATAttgaaaatagatttttttgaTTTGGCCTATTTATCAATATATTGTTGAACATACTTTAGTCTACATGCATATCAAAGTTCAAGAGTGGGATCTCTGCTAGTTTAAGTTATGGCCCGTTTTTATCCAGAGCAATTGACGTAGTAGGCATTGTAGccaatcacagccctcctttTACTTGTATCATTGCACATCCTGAAAATCACCAGCAGGAATCCATTTTCACTTTCACTCTGTTGGTAATGCTTACAAATTTGGATCATAACGCTAAAAGTAGCAGACACCCCAGTCTGGAACTTTGATATGCCCGCAGagtatattatgttcaacaatataTGTATCGATAGCAATGATTCTCATCTATCATTGCATAATAATCACCGCTCTATCGGACATAACACCTAACACCTGTTTTTTTTTAGACCTTTGAGCTATTGCTCTGGGTAGGAAATAGTCCATGTGATAGCACAGGATGATAGCCTAGCTCCTTTTGCATCGCTAGAGCTATTGCTTGAGCTAATAGACGCTTGAGGGACCTGTATTATGAGTCTAATGCATTATCAAATGCCTCCTAGCGTGTAGAGGAGAACCAACACAATCGACCAAGCCATTGTTAACGTGATCATTGTGGGTACCTGTTTGGGGTTATTAGTAGGACCCCAGAGCAAAGCGTTACAGCTTCATATGACACTAATTGTTGCTTTGTAGCATCTACAGATTCAACATTATGGTGTGTTAAAGGAATAAAGACAAAATGTCAGAAATATCCCAGTAATACTTCTTCCAATGGATTacattttgtggggggggggggggggtggaggaatgTCTGGGTTTTGTGAGGAATCACACTGTCCTTCTGACTGCTGTTTGATGTTTGTGCCTGCATACTGAGAATGCCAATTTGGAATGTCTGGGATTGAATGGTGTGAATTGAATGATGTGAGCTGTAATGAATATTAACAGGACAATACAGTACATGCTTGTATCCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478149 lncRNA downstream 95175 59372985 ~ 59373605 (-) False G421951
TU478150 lncRNA downstream 95389 59372985 ~ 59373391 (-) True G421951
TU478148 lncRNA downstream 96026 59372319 ~ 59372754 (-) True G421950
TU478146 lncRNA downstream 97281 59370649 ~ 59371499 (-) False G421948
TU478145 lncRNA downstream 97281 59370980 ~ 59371499 (-) True G421948
TU478292 lncRNA upstream 99648 59663321 ~ 59664610 (-) True G422088
TU478293 lncRNA upstream 101045 59664718 ~ 59665888 (-) True G422089
TU478336 lncRNA upstream 155036 59718709 ~ 59731791 (-) False G422125
TU478339 lncRNA upstream 168386 59732059 ~ 59734459 (-) False G422125
TU478332 lncRNA upstream 168543 59732216 ~ 59734459 (-) True G422125
XM_036977978.1 mRNA downstream 20583 59359886 ~ 59448197 (-) True LOC110524182
XM_021603571.2 mRNA downstream 330351 59131152 ~ 59138429 (-) False lsg1
XM_021603572.2 mRNA downstream 337769 59125081 ~ 59131011 (-) False tmem44
XM_021603573.2 mRNA downstream 337769 59125081 ~ 59131011 (-) True tmem44
XM_036977977.1 mRNA downstream 353675 59055120 ~ 59115105 (-) True atp13a3
XR_005051822.1 mRNA upstream 44709 59608382 ~ 59612038 (-) True LOC118964629
XM_021603602.2 mRNA upstream 102242 59665915 ~ 59709687 (-) False LOC110524188
XM_021603601.2 mRNA upstream 102242 59665915 ~ 59709692 (-) True LOC110524188
XM_021603603.2 mRNA upstream 146942 59710615 ~ 59714101 (-) True cope
XM_021603608.2 mRNA upstream 181803 59745476 ~ 59754819 (-) True LOC110524192
TU477230 other downstream 330523 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 432481 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 1054637 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 1354720 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 1762844 57699745 ~ 57705936 (-) True G419714
TU478587 other upstream 537092 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 1495321 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 2053197 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 2086294 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 2095360 61659033 ~ 61659585 (-) True G424502