RNA id: XM_021603609.2


Basic Information

Item Value
RNA id XM_021603609.2
length 1612
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC110524193
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59772761 ~ 59776656 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataaaaatgaatatGCAAATCTTTGCGAAACCCCGAGGTTGATTGGTGTCGTTGGGTGTTCTGGGACAGTGATTGGTCACTGTAACAATGACACAAATCTGAGCTCACGTCTGCGTGACGCAAGTCACAGTTGTCTACAAATTGAGGGCTCGCGCCTCTTCATCAATGAAATAGTAAAGACAGCTGGGCTCTGCCACTATACTGGAGACAAAACACCGAAACTTGAGTTACTCCCTGCCTCGTATTAGTTGGATTGCATTTGTTATTGATTGTGAGTGTCACTTCAGCTGGGACTAGGAGCAGAAGTTTCAAAAACCGACTCAAAATGAAATACGTAATAGGAATTGGCGGTGTGACTAATGGTGGGAAAACCACTTTGACGAATAGGCTGATCAAGTCACTACCTAACTGTTGTGTGGTTCATCAAGATGACTTTTTCAAGAAACCTGACCAGATAGAAGTCGGGGAGGATGGCTTTAGACAGTGGGATGTGATCACAGCATTGGACATGGATGCCATGGTGAACACGATTCGAGGCTGGAGTGAGAACCCAGTGAAGTTTGCACACTCCCACGGTGTCAACGTGTCCCCTTCCACAGAGGTTGCCGACCCAGATCAGCAGatccacattctgattgtagAGGGCTTCCTTCTGTACAACTACAAACCCCTGATGGACGTGTATAACAAGTGCTACTACATCTCCATTCCATACGAAGAGTGCAAAAGGAGGAGAAGTACAAGACAATACACCGTCCCTGACCCCCCGGGTCTGTTTGAAGGCCATGTGTGGCCCATGTACTTGAAGCACAGGAATGAGATGGTTGAGAGCGGTTTAGACATCGCATATCTGGATGGCTTGAAATCAGAAGAAGGGATCTACAGCCAGGTGTATGAGGACATCCAGAATACACTGTTGAATCGTTTATAGCAGGAACTCCATCTCCAAACCTGTATAAACCTGTAAATAGCATCAAGActgaagattttttttaaaattgaagCATTTTTTCTTATTGTGTAAATTATATTGAAGGTATGTTAACTTATGTTTGACAGAATCATTTCTGTTTGTTTTCTTATCTAATCTGTTAGTCCATTGCTTGTGTTAATCAAACCACTGCCTAGTATCTGAGGGAGAGGGACAAACTGACCATCTGTCAATGAAAAtattttttgtatggaggtcaatgcgAATTGCCAAGTTTCTacatgaggcttatttgatcaaatagattCATGTTTACGTTTGTTACAAAGGAACTGATATGTGGATTCACATGGCATTTTGATAACTGAGGTACAAATAATTCTTTATTGGAGTTGTGCCTCTGCCCTCTCATGGTCTAGAAGGGTCCCACCTGAACTGGCCGCTTGCCTTCCATATTTGAGGAAATGTATTTCCTTTGTTAGAATAGAGCGGTCACTTGACTATTATGAATATATCACATCTTTGTTAGTCTGTACTTGGCTTTGTTTTGGCAAGTAAATTGTTTAAAATGTGTTCAGATTTCTCAATGTTACTCCTGTGTCCTGTCTTTATTTACAGTTCTGAACTTAATTGTGGTACATGGGGTATGAGTAaataaagtttacatacaccttaaccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478373 lncRNA downstream 10323 59762173 ~ 59762438 (-) True G422157
TU478371 lncRNA downstream 11602 59760950 ~ 59761159 (-) True G422155
TU478355 lncRNA downstream 31132 59741404 ~ 59741629 (-) True G422139
TU478354 lncRNA downstream 32213 59740282 ~ 59740548 (-) True G422138
TU478339 lncRNA downstream 38302 59732059 ~ 59734459 (-) False G422125
TU478410 lncRNA upstream 46768 59823423 ~ 59823649 (-) True G422191
TU478413 lncRNA upstream 48050 59824705 ~ 59825043 (-) True G422194
TU478419 lncRNA upstream 65256 59841911 ~ 59842034 (-) True G422200
TU478424 lncRNA upstream 67405 59844060 ~ 59844263 (-) True G422205
TU478425 lncRNA upstream 69336 59845991 ~ 59846213 (-) True G422206
XM_021603608.2 mRNA downstream 17942 59745476 ~ 59754819 (-) True LOC110524192
XM_021603603.2 mRNA downstream 58660 59710615 ~ 59714101 (-) True cope
XM_021603601.2 mRNA downstream 63069 59665915 ~ 59709692 (-) True LOC110524188
XM_021603602.2 mRNA downstream 63074 59665915 ~ 59709687 (-) False LOC110524188
XR_005051822.1 mRNA downstream 160723 59608382 ~ 59612038 (-) True LOC118964629
XM_021603612.2 mRNA upstream 11089 59787744 ~ 59797770 (-) False LOC110524194
XM_021603614.2 mRNA upstream 11089 59787744 ~ 59797771 (-) False LOC110524194
XM_021603611.2 mRNA upstream 11089 59787744 ~ 59801204 (-) True LOC110524194
XR_005051823.1 mRNA upstream 128190 59904845 ~ 59914276 (-) False LOC118964630
XM_021603643.2 mRNA upstream 202352 59979007 ~ 59981619 (-) True klf2a
TU477230 other downstream 634504 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 736462 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 1358618 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 1658701 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 2066825 57699745 ~ 57705936 (-) True G419714
TU478587 other upstream 324110 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 1282339 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 1840215 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 1873312 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 1882378 61659033 ~ 61659585 (-) True G424502

Expression Profile