RNA id: XM_021603614.2


Basic Information

Item Value
RNA id XM_021603614.2
length 3649
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC110524194
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 59787744 ~ 59801204 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctctctccatctgagGGAGCGGAGACAGGGAGCAGGTGCAGCTCTCTCCTTAAATGGTAGTGGGTAACGTCATGTGACGCAGCAGCCAGTCAACAACACAGCATCACCAGGAAAATGGTGGCAGATCAGCTTTAaggaaaaggaggaagagaaaaTAAGTCTATGTATCATTAGGCTCTGAATGATGATGTGCCTGAGGCTCCCTATGATCGACTGAGAAAAGGGCATGCATAATATTCTAAGATCCTGTGCTGTAAAATCAAGTAGTTGCCTGGACCGTCTTTGAATCCATCCTCATTTTTGATAAGGAAGTGACAAGGGAAATTACACCACGTGTTAAGGGGTAACCTAACGGTGTGTCTGCCTCCCCTGTACAGTGAATAAGACCACTTCCTGAGGACGGTGACATGGAGTCTTCCTGTGGCCTCACCGATGACCGAGCCTCTCCCCCCAACTCTCTGAATGTTAATGCAGTTGGAGGAGGTGGAAGTGGAGGAGGGTCCACCCATCGTAAGCGGCGTACATTAGTGGCCCCGGACATGAACCTGTCCCTGGACCACAGCGAGGGTTCCCTGCTGTCTGACGACTTCTTGGATACGCCCGACGACCTTGACATCAATGTGGACGACATCGAGACCCCAGACGACAACGACTCCCTGGAGTTCATCACCAACGGCAACGAGCTGGAATGGGAAGATGACACGCCAGTGGCCAACGCCAAAGCGGGGCCTGGTGacggagaagaggaggatggtgCTGATGGGACGGGTGGTAACGGGCGCCTGTGGAGGACGGTGATCATTGGGGAGCAGGAGCACCGCATCGACATGCAGGTCATCAGGCCGTACCTCCGCGTCATCACCCATGGAGgTTACTATGGCGAGGGTCTGAATGCCATCATAGTGTTCTCAGCCTGCTACCTGCCCGACAGCAGCTGTGCAGATTACCACTACATCATGGAGAACCTCTTCCTGTATGTGGTCAGCAGTCTAGAAATGTTGGTTGCTGAGGACTATTTGATCATCTACATGAATGGAGCCACACCACGGGGCAAGATGCCGGGCATAGGATGGCTGAAGAAATGCTATCAGATGATTGATAGGAGGCTGAGGAAGAACCTGAAGTCTCTGGTCATCGCCCACCCCACCTGGTTCATCCGCACTGTGCTGGCCATATCTAGGCCTTTTATCAGTGTGAAGTTTATGAATAAGATCCAGTATGTGCATAGTCTGGATGAGCTGGCAGAGATAGTCCCCATGGAACATGTGCAGGTCCCGGAGTGTGTGGTGCAatttgaggaggagaggatcagagcTCGGAAAGAAagGATGGAGCAGGAACAGCAGGAACAGCCAAACCCACACGCGTCTTCTTCAGCCAAGGCAGAGAGGCCCAAGTCAATGATCACAGGGCAAGGAATCTGAAAGGGACCTGCTCCTCTTTATTCATCTCATACCATGTTGTTGAAAGAAGTTTGGAGCATGAAAACTGTGTTTATAAGAAGAAACATGAAGTCCAACAAGTCTAAGAATACTTCCTAATCTATAAATATCAAGCTGAAGATTTTTCCATCAAGATATTAAACTCCCCAACACACTCCTCAGCGGTTCTTAGGTTGCCAACTGATTCCATCAGGACATTCCAAGGAATTGTCTGTTCTGGGGACTGTACAACTCCATGTTACATCATTTTACGACCGCTGAAAGTAGTTACTTTTAAACGACGCCCCCAGTCACCACCGTGGGTTTTGTATCCATTTCAAATATAGATGACACTGCGATACTCTTGCCTAAGTCAAGATGTAAGAAAAAATAACATGAATATTGTACAAAATGTTCCACCGGACATAAATGGTGTAAGGTGTCAGTGGCAGGCAGGTAACCAGACCTTTTACAGTTTTGTGTTGGAGGCTCTTGCAGGGACAATGGTAGACTAGACTtgagtatgtatactgtatacagaCAGTGTTGGATGGTGTGTCCTAGGAGCTGCACTGAGGGCTCTGCCAGGCCTAGTTACTGAGAGGAAGATatgccttagagaagaagaggggaggaggaacagagagTCAGGCAATGCCCCTTAGTGCTCAGCATTGGTGTGCTGTGGCATCATTTCACCCATTAGCGCTATGCTAGCCCTTGAACATTTAGATGTAGACTGGAATGCTTTGCGAGACATCGGATGCCTTCACCTTTGCTTCATTTTGGCCTCATCATTTGTCAGAGTACAGGCTTTATTTTTGATCAACTGTTTTGCATTAATAATTTGGATGGCATCATGTTTCATATACCCAGATTGGTCCGGGGATCATTCAGTGCCCAACTAACCAACCCATGTACCTTACATTCTGATGTGCCTCAGGATTCTTGTCTGTACATTAATATGGGGGCCCACTGAAAGTAATAACAAGAAATGTGCTGGTTTGACTGTAATGTCAAGAGGACTGCATTTCATTTCAGTTTTTCAGTCATTGATGTTGTGACTTAATGGTATCATTTCTGTATCATGCTGTGTTGTGGGTGCAGTCAAAGCATGCCAACATGTTGTCAGCATGTAATGTACCTTCAGATGTCCTATTGGATTATGGACCAGTCGCCTAATGGTCAATCTTCTATTGGATACTTACCTACTGGGTGGTAGAGGGGAGGAAGTGTTAagagtttttatttttgtaaagattacatacatacatgtattgtaAGTGTTGTTTTGCACTATAGAATTTGATTGTCATTAAATTGTGAGCATAACATCTAGATGTGTATATTTGGGGACAGGTTGCCTTCCTAATATGTAACTCAAGATGGATTTTTGTGTGCTCTTCTAATTTTTGTACAAGTATACTGTAGTACAATCAATATCATGCATTGTATTTGTTGGTAACCTGTCAACCCGTCTAGACAAGTATGATAATCAAAAATGTCTCTTTCTGAAGTGCCATCCAAATTCAAACGATACCttgataaatataaaacataaCAGAAGTCATTTTCTGTGGACAGGTTTGTGGATGGCGATGGGCTAGACTAGAGGTGATTGATATTCAATGGACAAAGTAAGAAAATGGCTTCCAAACATTTGTATACACATAATTGTAGTGTTACGTTAGAACATTGGACAGATTCATTTGCCTTTGATTTCTGGTAGAGAAATACCTATCCCATCAAAAGGTAGGCTTAAACGTGGCACAGAATTGCAGGAGTTTTTCTGCAGTCTCCCAAAGCTGCTGGAGAGAGAGTGCCGTTTTCTAAAGCATGTCAGCTCTTCTGAGTGCCTCTCCTTCTTTTCACCAAATTCTACACAGAAAACTATGATATGGAATGTACAATTCTAAATTGACTACtgggatttttttccccccaaattGCTAGTAAACTGATTTTGTTGACACAAGTGTATTTTGTTTTGgtaaaaggttctacatggaaagcAACCCCTGAGCGTCCAAAAATGTCTTTCAATCATATTTTCAGTCTTTAAAAGCACAATATGTTATTACACTGGAAGATTTGGAAGAGATCAGTGGGCAATTTGTCGGCTGGAATACTGTGTGTAGCTTATTTTTCAAAACTGCATGTTCTTTAGATTGTGATGTACATTCTTCCATGTAAATACAAAGAAGTAAACTGTTCCACCCGACAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478373 lncRNA downstream 25306 59762173 ~ 59762438 (-) True G422157
TU478371 lncRNA downstream 26585 59760950 ~ 59761159 (-) True G422155
TU478355 lncRNA downstream 46115 59741404 ~ 59741629 (-) True G422139
TU478354 lncRNA downstream 47196 59740282 ~ 59740548 (-) True G422138
TU478332 lncRNA downstream 53285 59732216 ~ 59734459 (-) True G422125
TU478410 lncRNA upstream 25652 59823423 ~ 59823649 (-) True G422191
TU478413 lncRNA upstream 26934 59824705 ~ 59825043 (-) True G422194
TU478419 lncRNA upstream 44140 59841911 ~ 59842034 (-) True G422200
TU478424 lncRNA upstream 46289 59844060 ~ 59844263 (-) True G422205
TU478425 lncRNA upstream 48220 59845991 ~ 59846213 (-) True G422206
XM_021603610.2 mRNA downstream 11088 59772761 ~ 59776656 (-) True LOC110524193
XM_021603609.2 mRNA downstream 11089 59772761 ~ 59776655 (-) False LOC110524193
XM_021603608.2 mRNA downstream 32925 59745476 ~ 59754819 (-) True LOC110524192
XM_021603603.2 mRNA downstream 73643 59710615 ~ 59714101 (-) True cope
XM_021603601.2 mRNA downstream 78052 59665915 ~ 59709692 (-) True LOC110524188
XR_005051823.1 mRNA upstream 107074 59904845 ~ 59914276 (-) False LOC118964630
XM_021603643.2 mRNA upstream 181236 59979007 ~ 59981619 (-) True klf2a
XM_021603647.2 mRNA upstream 318759 60116530 ~ 60134272 (-) True LOC110524206
XM_021603652.2 mRNA upstream 484603 60282374 ~ 60289431 (-) True LOC110524209
NM_001124604.1 mRNA upstream 500433 60298204 ~ 60306640 (-) True lpl
TU477230 other downstream 649487 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 751445 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 1373601 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 1673684 58112387 ~ 58114060 (-) True G420193
TU475656 other downstream 2081808 57699745 ~ 57705936 (-) True G419714
TU478587 other upstream 302994 60100765 ~ 60101056 (-) True G422347
TU479791 other upstream 1261223 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 1819099 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 1852196 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 1861262 61659033 ~ 61659585 (-) True G424502

Expression Profile