RNA id: XM_036977998.1


Basic Information

Item Value
RNA id XM_036977998.1
length 2439
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC110524211
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60368391 ~ 60395175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCTCATCTGAATCACACTTCTCTGGGTTGGAGGAGTGCACATTAACTTTCCTCATCACTCCTGCCATTTTATCTGGCTTTCAAAACTGGAACGCTGCGCTTCGCTAATGCGTTCATCCATATTACATTCCAAATTAGATATTTTAATACTTTTGTGAAGCCATTCTTAGGCTGAAGCTGAACTAAAGAAACATTTCGGGAAACACCTGGATAGCCTACTGCTTTGGTTTATACAGCTTACATTTTTCCACTTGAGATTTCTATTCGGCTCTTTCGGGTCCATTCCAAAGACTTTGAATACTATTTGTAGCCTATATCCTGTTTCGAATAGACTAAAGCAGCTTTTACcacaatattttatttttctatACCAAAAgttttatttttaaccaaatagtACGACAATGGCAGGTTTGAATTCTTTGGAAGCTGTGAAGAGAAAGATCCAGTGTTTGCAACAGCAAGCCGACGACGCAGAAGACCGGACCCAGGTTTTACAGCGAGAACTGGATGGGGAACGAGAACTTCGGGAGAAAgCGGAGGGTGATGTGGCGGGTCTGAACCGCAGGATCCAGCTAGTGGAGGAGGAGTTGGACCGggcccaggagaggctgtctaccGCGCTGCAGAAACTGGAGGAGGCAGAGAAGGCCGCAGATGAGAGCGAGAGAGGAATGAAGGTGATAGAGAACAGAGCCTCTAAGGACgaggagaagatggagatccAGGAGATGCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCCGACCGCAAATACGAGGAGGTGGCCCGTAAGCTGGTGATCTTggagggagagctggagagagctgaggagagggCAGAGGTCTCAGAACTTAAATGCAGTGACCTGGAGGAGGAGTTGAAAAATGTGACCAACAACCTCAAGTCCCTAGAAGCCTCGTCTGAGAAGTACTCAGAAAAAGAGGACAAGTATGAGGAGGAGATCAAGGTTCTTAGTGACAAGCTGAAGGAGGCTGAGACTCGTGCAGAGTTTGCAGAGAGGACTGTGGCCAAACTCGAAAAGTCCATCGACGACCTGGAAGAAAAATTAGCAGGTGCTAAAGAAGAGAACTTGGGGATGCATCAAGTCCTGGACCAAACACTGCAAGAGCTCAACAGCTTATAAACATGATGAAGAAGATGGAAAGGATAAAAGTCTTGCAACATTCCATAAATATTCAATTTCGTTCCACATTTCCAGCTGTAAAGTCTTATTCCCAGGGAAAGGGGATTAACTTAAATACTTGTACCCTTCATTTTCTCTTCTCTTTTTAAGTcacaactttctctctctctctttaagagAAATGCATTCCAAATCACCAGCTTCCTCGAATCCCATTTCTTATGTTTACAGCATTTTGTTTCATGGAACTTTTGAGATTATAGACCAGCAATAAAATAAAATGGATTATGACCATATTTACAAACAGTCTTTCAGGCCAATTATTCAGGCCAATTAGTAAAGAATAGAAAAAACAACAATTCATATCTGAAGTGTGCACTCCAAGAGCATGTTTTTGAAATGGGTCTTGTGACATGGTTTTCATTTTACGTATGATTCATGAGCTCCACCTCGAGGTCTTATGTGAACAGTTTACAGGAATCAGCTTTACTGTCCATGCACCCATCGACATGGTCATATTTAATGCATTCACAATGTGTGTGACCATATTCACAGGTTGGACTGTGCCTTTTCAGAATGAGCCAATATTCTACCTTTGGTGTGCTTGCGTGTGTTAACATGGTCGTTGAGACGAAAGGATGACTCAAGGAAAGTATGGTGAACATGTCTGTGGTGCTACTTGTGGTGGTAAAATACTATGACCGACAGTCAGGTGGAGGGTTTGCCAAAGCCAAACTCAAAATGTTTTTTGATGTGAAAAGAGCCTCATGCAAATCCTTTAAAGAACATCATCCCATCCTCTGACTTAACCTATAATCTGTATGGTTTTAAAGTGCCACCATATGCTGACATGCAGCTTTATAGCACCTCCTTTCCACTATCCCAGCTCTACATTTGACTGCCTGAGCCTTGGATGTAAAATCACATTCCTGGTATTAAATGTGGTGGTAGCATATGCAGTAAACGTTATGCCAAATAAGCACCACTGGAGCCTCAATCAAGGTAATAAAACATGGATACTTATTGTATATAGTAGAATAATGTTAGTTATTGAGAAGATGTATTGCTCCAGTTTTTCACCACTTTCCGGCAGGGGAACTCTCGAAACCAAAGAATACAAATACCAGAGAAGATGAACCCTCAAATGTTTTTATTGTTGTCTGTGAAGGTGATCATGGCTTCTCATCCTTGGCCCGTGAAAAAAGCTTCTCATTTGACTTGAGTCTGTGTTGAAATGTTTCATTCACCTTTCCCTCTTTCAAtctaatacatttttacaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478748 lncRNA upstream 53670 60322657 ~ 60322919 (+) True G422500
TU478045 lncRNA upstream 78023 60297185 ~ 60298566 (+) False G421867
TU478812 lncRNA downstream 26256 60421431 ~ 60421644 (+) True G422561
TU478813 lncRNA downstream 26981 60422156 ~ 60422600 (+) True G422562
TU478814 lncRNA downstream 28375 60423550 ~ 60423839 (+) True G422563
TU478817 lncRNA downstream 38036 60433211 ~ 60433863 (+) True G422566
TU478821 lncRNA downstream 49137 60444312 ~ 60444602 (+) True G422570
XR_005051588.1 mRNA upstream 108742 60223797 ~ 60267847 (+) True LOC118964531
XM_021603650.2 mRNA upstream 196315 60165608 ~ 60180274 (+) False LOC110524208
XM_021603651.2 mRNA upstream 196315 60165608 ~ 60180274 (+) True LOC110524208
XM_021603645.2 mRNA upstream 214655 60153246 ~ 60161934 (+) False malt2
XM_021603659.2 mRNA downstream 3815 60398990 ~ 60407448 (+) True LOC110524213
XM_021603653.2 mRNA downstream 12378 60407553 ~ 60411038 (+) False hsh2d
XM_021603654.2 mRNA downstream 12378 60407553 ~ 60411038 (+) False hsh2d
XM_021603655.2 mRNA downstream 12378 60407553 ~ 60411038 (+) False hsh2d
XM_021603656.2 mRNA downstream 12378 60407553 ~ 60411038 (+) True hsh2d
TU476694 other upstream 1432372 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 1959813 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 2476941 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 3009252 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 3418424 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 299082 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 1326362 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 1710348 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 1887977 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 2649915 63045090 ~ 63051530 (+) True G425224

Expression Profile