RNA id: XM_021603655.2


Basic Information

Item Value
RNA id XM_021603655.2
length 1949
RNA type mRNA
GC content 0.46
exon number 7
gene id hsh2d
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60407553 ~ 60411038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGTCAGATATTTATATCCCAAGATCGACCACAACGAAACTGTCGTTTTTATTTTTCTTACTTTCGATTGCACCTGTGCTGTATATCTTATCAATCGTATATATTGAAGAGGACTACTCCTATAGAATTAAAATGAAATGTTTAAATTAGCTTGATAAAGCTGTAATTGGTATTGAGGCTAGGCAAGGCTATTTTACGACGATAGACCTACCAGATTCACGCTTGGGAAAAATATCTCCACCCTTTTCCCTCACAGGAGCTAACTTGTAAAGGTGTGTGAACAGAGCAAAGCTCCAGTTTCGAGTTGCTCCTCATGAGAAACTGCAAATTATAGAGGAACAATCAGAGCAATAGCGAAGTGCTCTTTGAAATTAGGGACACAACTGGGGGGGTATGGATGGAACACAGACTCAGGGAAGACATGACGCCCATTCCTGGTTCACTGAGTTCCAACTGGACTGTGTCATCAGGAATGGGGTAGTTCCAGAATGGTTCCATGGCATTATTTCCAGGAAGGTTGCTGAGGAAATGCTCCTGTCCAATCCCACAGGCTACTTCCTGATCCGTGTCAGTGAAAGCAGGATAGGATACACACTCTCCTATCGTGCCACTGATCGGTGCAGGCACTTCATGATCGATGTGCTGAAGGACAATCGCTACATTATTGTAGGAGAGGACATGCATCACAGCTCACTGCAAGACCTGGTGAACTTTCACCGCAGGGTGCCTATCATGCCTTTCAATGAGCTGCTGACTGTAGCTTGTGGACAGGTATCAAAGGACAAGACTGATTACGCAGAACTGTTATTCCCCAAAAGACCAGCCATGAACCCTAATCATGGTGTGTTGCCAAATAACCCCCCACACATGCACAGTAGTACTCATCTGAAAGTAGCTGAGGACATTCCACCTGCCCTCCCACATCGTCCCAGCACATTGAGTGACCCTGCCGGCCCACCTCCAAACACTAGCAAACCACCTGTATCTCCAAACACACCTTCTCCCAGACTCTACCCCTGCCTGGAGACTGAGTTAAACACACTGAGCTTCCAAACCCCAAGCATGGTAGATCATACTGCTAAACCAGTGCCATTGCCCAGGAAAATGCATGTAGTCACCACGGCCCAGCCGGACCAACCTCCTGAGTTACCTGCCAGAGGCCCTGCTCTACCACAGAGAAAGGACACGGACCAGAGCAGCACAACATCTAAAGGTCCCACAGAACCCAGGACTGTGGGTACAGGCAGACCACAGACCCGACCAAACACACACCACCAGGACCCAAACTCCAACCAACAGAAGAATCAAGATGTAAAGTCCGTGGTCAGCAACCTGAGCTACTTCAGGAGGAAGTTCCATAAGAAGAGAAGTGCCTCTCAGGAGCACATGTATGCAGAGATTAGTGTGGAGGATGAGCAGGGGCAAGACCAGGGGAAACTCACAGCCGTGGAGGCTAGAGATAGGGACATTGATACAGCTGCTGATAACGAGTATCAGATGctaccaggagagattgacaatGGCCTTCCACCCATCACTGCTGCCACCGCTGTTAGACCCACGGACTGTGGGTTACTGCCAGAGTATCTGAACCCTCCTCCTTTTGCCCCTGGATACTAATGTCCACTTCTCTACCCTCAGGATGGCTGGGTGGCCAAACGGACAAATGCATTTTGAGAAGGCACTGATGAGTTAAAGTTAGTCTGAAGATTTTCTAGTTTAACTGGATATATCTAGAATCTCTTTTACAATGTGACATTGAGAACTATTTATGTCTGCAACCAGCTCTGGTTAGTGATTAGACCATATCCAATGTTTTTTTACAGTGCTATGTATTGGTCAACTATTTCATATCAAATGTGAAAAtacttttgttttatttaatttgatGTGAGGAATTATGTTAGACATCTATGTATTATTTTCATTAAAATACAACCATGGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478748 lncRNA upstream 84634 60322657 ~ 60322919 (+) True G422500
TU478045 lncRNA upstream 108987 60297185 ~ 60298566 (+) False G421867
TU478812 lncRNA downstream 10393 60421431 ~ 60421644 (+) True G422561
TU478813 lncRNA downstream 11118 60422156 ~ 60422600 (+) True G422562
TU478814 lncRNA downstream 12512 60423550 ~ 60423839 (+) True G422563
TU478817 lncRNA downstream 22173 60433211 ~ 60433863 (+) True G422566
TU478821 lncRNA downstream 33274 60444312 ~ 60444602 (+) True G422570
XM_021603659.2 mRNA upstream 105 60398990 ~ 60407448 (+) True LOC110524213
XM_036977998.1 mRNA upstream 12378 60376589 ~ 60395175 (+) False LOC110524211
XM_036977996.1 mRNA upstream 12388 60368391 ~ 60395165 (+) False LOC110524211
XM_021603663.2 mRNA downstream 16072 60427110 ~ 60432323 (+) True LOC110524215
XM_036977999.1 mRNA downstream 24725 60435763 ~ 60452642 (+) True LOC110524216
XM_021601327.2 mRNA downstream 69130 60480168 ~ 60484430 (+) True LOC110522875
XM_021603673.2 mRNA downstream 123495 60534533 ~ 60543487 (+) True ctns
XM_021603674.2 mRNA downstream 135143 60546181 ~ 60566583 (+) True LOC110524221
TU476694 other upstream 1463336 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 1990777 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 2507905 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 3040216 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 3449388 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 283219 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 1310499 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 1694485 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 1872114 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 2634052 63045090 ~ 63051530 (+) True G425224

Expression Profile