RNA id: XM_021603663.2


Basic Information

Item Value
RNA id XM_021603663.2
length 2310
RNA type mRNA
GC content 0.38
exon number 4
gene id LOC110524215
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60427110 ~ 60432323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGACTAACCACGGAAGGCAGTATGACATCACCAACCCTGCCTTTACATGCCAGGAATCATTTGCTAGTTGTTACTCACGCTTAGCAAGTTGCTTCGAGTATTGTATGATTTAATGAAAGGAGCAAAAACGACTTTAGACCGTTGAGTTATTTGCAACCGGGGAGAAACACAAAAGTGTCTGAACATTCTGAAACAATGTCTTTCATCCCAGGACAACCAGTTACTGCTGTTGTGCAACGGATAGAAATCCGCAAACTCCGCCAGGGTGAACATTTGATCCTGGGTTTCAGCATTGGAGGAGGAATAGACCAAGACCCGGGCCAGAACCCCTTCTCTGAAGACAAGTCAGACAAGGGCATCTATGTGACACGGGTGACACCAGAGGGACCAGCAGAAGTTGCAGGCTTGATGATGGGAGACAAAGTAATGCAGGTAAATGGATGGGATATGACCATGGTGACACACGATCAGGCACGCAAACGGCTGACGAAGAAGAATGAAGATGTCGTGCGGCTACTGGTGACCAGGAAATCCCTGGAGCAGGCTGTCAAACATTCTATGATGTAATGACTccaaacagtagcagcagcttggTGACCTCATTGTCTTTCGACAGGTGGCGTCCCTTCTATGCAACGCTAGTCCTTTCATGCAGACTGAGTTCGCTATCTGACGTCAGACAATGCCAGTGACCGAAAGCACAGTATTCCAAAGCTTTTCTTGCAAGCTGTAAGGTTGGGGTGAATTCCATATCAAATTTGTCAATTTAGGAGGTGGAAAGAAAATGCTATTCAAGAATTGAAAATGGGCATTTATTTTCCTTCAGATttttcacttcctgaattgatggAGTTGAAATTAAATTGATTACAGTCCTACTCACATTTTCCCAATTCAAACATGGTACAACCCTTTTATAACATCGCTATAGAACCAATATGGTGCAAGTTATTGGGATCATTAATGCCTTTACTAGCTGACATGAGAATGACTTATTAAGTAATTAGTACACTTCATTACAGTTAATGATCTGTCACTTTTAATTTAGCCAACTAATCATTTGATGTTTTCAAGTCGATGTCTTTACAAGCCAAAGGAAAACAATGCCAAGAAACTGTAGATTGATAAAGGATGCTTTGCAAACACATGTGTACAACGCACATAGCATTTATCTGCTACGGTAATTTGTATGTATTCCATAGAGGCTTCCTGTTTATATGAGTTGTTATGTTTGATGTATGGCATTAATAAGAATGGAACGCTTAGTGCTTAACACTGCTCTGTGTTGGTCGAAATGAATGAATATTCATCGGGCTTGGACAATATATCTTTATTTTGGTATCTTTATCCATGCAGTGCATCTACCAAAGTAACAAGCACAGCCAAACTGCATACTTTATATTTCATTATACTCTAATTGTACTTGTCTACCAAATACTGTAATACTCATTTGAGGATTGGATTTTTGTAGGTAGTGTAGCAGGAACACAGTTACTTCTCATTCTCAACCCTCTGGGTATAATTCATTTGGTGTTGCCATCGTTGCCTGGAAATCAAGGCTAGGGTATAGTCAACTTTAAGTGCCTTCTTTCTCAGGTTTATATAGAGAAAGTGGCATGTTGGATTGTTAATTAGGTTGCTTGCTGGTTGATGTCAGACAGCTAATACACTTTAGTTGAATGCTGAACCAACGTTGAAGGATCAAATGAAATTAGACGTTTGAATACACTTGAATACAAATTACACTCTAGTGAGTACCACTAAAACGTGATGGCGCCAATAGGGTTTTAGTATTCATGCTCCTTTCCATTCCTATATAGTTCAGTAATATATCCTTTTTCACTGCCTCAGCCATGTTTTACACAGTGATGCCTCACTTTTGTAATCCAATCTTATCAATTCCTATTCAAATGAATCAAAGGTAAAATAATATTGTAATGTGGATTGCAATAGTACCTAGTATGTTCTACTAATTCAATATTTTgtatggctttgtttttgctagAATTCTTTGAATTGGGAGATTATCATTATACTGTATATCGTTGGCAGAGTGATGTAACTAAGTCTACACACACTTTTGTAAAGAATTAACACTTCAAAAGACTGCCCAAACTTTTGATAAATGTAGCCTTGCATGAATTTTCTATAAAGTTGATTTCTATCAATATGTCGTTTGTGTTAAAATATCTTTTTTTATAATTACTCCAAGTATATGAGGAAAAACTTTGAATGATCATTTTGGCATATGATTGTATATTGGACACTTTCCGAATGTTCTTTAACATAAATCAAAAATGAACTGAAA

Function

GO: NA

KEGG:

id description
K24067 TAX1BP3; Tax1-binding protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478814 lncRNA upstream 3271 60423550 ~ 60423839 (+) True G422563
TU478813 lncRNA upstream 4510 60422156 ~ 60422600 (+) True G422562
TU478812 lncRNA upstream 5466 60421431 ~ 60421644 (+) True G422561
TU478762 lncRNA upstream 8698 60331178 ~ 60418412 (+) True G422514
TU478748 lncRNA upstream 104191 60322657 ~ 60322919 (+) True G422500
TU478817 lncRNA downstream 888 60433211 ~ 60433863 (+) True G422566
TU478821 lncRNA downstream 11989 60444312 ~ 60444602 (+) True G422570
TU478871 lncRNA downstream 69729 60502052 ~ 60502319 (+) True G422612
TU478878 lncRNA downstream 77361 60509684 ~ 60513454 (+) False G422618
TU478879 lncRNA downstream 77361 60509684 ~ 60573995 (+) False G422618
XM_021603653.2 mRNA upstream 16072 60407553 ~ 60411038 (+) False hsh2d
XM_021603654.2 mRNA upstream 16072 60407553 ~ 60411038 (+) False hsh2d
XM_021603655.2 mRNA upstream 16072 60407553 ~ 60411038 (+) False hsh2d
XM_021603656.2 mRNA upstream 16072 60407553 ~ 60411038 (+) True hsh2d
XM_021603659.2 mRNA upstream 19662 60398990 ~ 60407448 (+) True LOC110524213
XM_036977999.1 mRNA downstream 3440 60435763 ~ 60452642 (+) True LOC110524216
XM_021601327.2 mRNA downstream 47845 60480168 ~ 60484430 (+) True LOC110522875
XM_021603673.2 mRNA downstream 102210 60534533 ~ 60543487 (+) True ctns
XM_021603674.2 mRNA downstream 113858 60546181 ~ 60566583 (+) True LOC110524221
XM_021603679.2 mRNA downstream 258150 60690473 ~ 60692763 (+) False LOC110524224
TU476694 other upstream 1482893 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 2010334 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 2527462 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 3059773 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 3468945 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 261934 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 1289214 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 1673200 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 1850829 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 2612767 63045090 ~ 63051530 (+) True G425224

Expression Profile