RNA id: XM_036977999.1


Basic Information

Item Value
RNA id XM_036977999.1
length 2722
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110524216
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60435763 ~ 60452642 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTTTCCTCCCACACAGACCTCTGCTCGATGTCAAGGCGTTTTTCTATCGCGCCGGAGGGCTGGAGAAAAAGCGCTTAAGCTCATGTAGTAAATTAAAATGAACTGtagatgtgtgtgagtgtgtgctacTGTACTTCATGTGAGTGGAAAGCAGGCAAGGAAAGAATGAACCATACCGTGTGAGGACCGTCATAAGATAAGAGTGAAGAACCATCAGTTGAAGACGTTCCACCAGGACCAGAGAAGCTCTCCATGACTGTGAACTATCTCAATCCGTGAAGACAAGAAAGGAAGCATCAGAAACAGGTTTCCCACGAAACCTGCCTCCTGGACCAGGTGCTGGAGCTGATTATGAATGAGAAGCCCCCCAACACTGCCAGCCTTTTCCTGAACGAGGACGCCGACAAGCCCCCCCTCCCCAATCGAGGCCTCTGGCGGCGGCTACGTAGAGCCATGCAGAAGAGAGCGGCCAGCACCCAGGACAGGATGAGCACCATCACTAAGGAGAGCATCAATGGCTTCCTGAGACGCAACCTCTTTGTCCTCCTCACCATCGCAGCAGTGGCTCTGGgtgtcATGCTGGGTTTCGCCCTGCGGCCCCACAACCTGACCCTCAGGGAGATCAAGTACTTTGCCTTCCCTGGAGAGCTGCTGATGAGGATGCTGCAGATGCTGGTTCTGCCTCTCATCGTCTCTAGCCTGGTCACAGGTATTTCCTCTCTGGACAGCAAAGCGTCTGGGAAGATGGGAATGCGGGCTGTGGGTTATTACATGGTGACCACCCTCATCGCGGTCTTCATTGGCATCGTCATTGTGATTGTCATCAAACCAGGGAAAGGCCATAGGGACAGCCCAGTGGCCTCTAGCGGTACCATAGAGCCGGTACACGCAGCTGACGCCTTCCTGGATCTCATCAGGAACATGTTCCCTCCTAATTTGGTGGAAGCCTGTTTCAAGCAGTACAAAACGGTCTACAAGAAGACCATCCACACGAAGAACGTGACTGTTGCCCTCAGTCTGACTGACTCCCTCAACGCTACAGAGGCTGCCTTGGCTGTTAACATGAGCAGAGTGCTGCAGACCATCCAGGAGACAGTGGTGGAGATGATCCCCATGTCTGGTTCCTCTAACGGGGTGAACGCCCTGGGTCTGGTGGTGTTCTCCATGTGCTTCGGCCTGGTCATTGGCAGCATGAAGCAGCAGGGACAGGCCCTCAGGGACTTCTTCGACTGCCTCAACGAAGCCATCATGCGCCTGGTGGCCATCGTCATCTGgtatgCTCCAGTGGGCATCCTGTTCCTCATAGCAGCTAAGATCGTGGAGATGAAGAATCTGGCCGAGGTGGGAGGTCAGCTGGGGATGTACACAGTGTCTGTCATCGTGGGTCTGCTCATCCACGGCTTGTTTGTCCTGCCCCTGCTCTACTTCCTGGTCACCAGGAAGAACCCCTACACTTTCATGGCTGGCCTTCTGCAGGCCCTCATCACAGCACTGGGAACATCCTCTAGCTCTGCCACCCTGCCCATCACCTTCCGCTGTCTGGAGGAGAACAACCGTGTGGACAAGAGAGTGACACGCTTTATCCTTCCCGTGGGTGCCACCATCAACATGGATGGCACTGCCCTCTACGAAGCCGTGGCAGCCATCTTCATCGCCCAAGTCAACGACATGGAACTCAACTTTGGCCAGATCCTCACCATCAGTATCACAGCAACAGCTGCCAGCATCGGCGCAGCAGGCATCCCACAGGCTGGTCTGGTTACCATGGTAATCGTATTGACATCGGTGGGACTACCCACAGAGGACATAACGCTGATCATCGCTGTGGATTGGTTCCTGGATCGCTTAAGGACTACCACCAACGTGCTGGGGGACTCTATCGGGGCAGGCATCGTGGAGCACCTGTCTCGCCAGGAGTTGCAGAGCCAGGATGTTGAGGTGGGCAACTCAGTGATTGAAGAGAATGAGAAGCCCTACCAGCTCATCTGCCAGAAAAACGACTCAGTGAAGCATCGCAACAGTGAGACCCCCATGTAGGGGTTACGACAGTCTGAAAGCATCCACTAGCCGCTACCGTACTTCTTCAGTGTTTGTAGATATGGAGGAACTGGATAGGTGTAAACAATATGGGGAAAGCTATTGGATGCCGAGGTGAAGCCATCACCATATTGCTAACACTTATCTGGGTAACTTCAGATCTGCAAACACTGTAGGGATAGTGGCTGGAGATCGTTTTGACACTGTTAACCATATCAACTGTTTTGGTCCTTTCAGTCCAAATCTGAGATGCATCTCAATtgtctagagcagtggttcccaaactttttatagtcccgtgcCCCTTCAAACATttaacctccagctgtaccccctctagcaccagagtcagcgcactctcaaatgttgttttttgccatcattgtaagcctgccacacacacattatatgatacatttattaaacataaaaattagtgtgagtttttgtcacaaccctgctagtgggaagtgacaaagaggaggaccagggcacaaataataatatattcataataaataattttgctctttatttagccatcttacatattaaCTTTATTTGTTCATCTAAAATTGTGAAttactcaccacaggttaatgagaagggtgtgcataactctgcaatgttgggttgtattggagagagtctcagtcttaaatcattttccacacacattctgt

Function

GO: NA

KEGG:

id description
K05614 SLC1A3, EAAT1; solute carrier family 1 (glial high affinity glutamate transporter), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478817 lncRNA upstream 1900 60433211 ~ 60433863 (+) True G422566
TU478814 lncRNA upstream 11924 60423550 ~ 60423839 (+) True G422563
TU478813 lncRNA upstream 13163 60422156 ~ 60422600 (+) True G422562
TU478812 lncRNA upstream 14119 60421431 ~ 60421644 (+) True G422561
TU478762 lncRNA upstream 17351 60331178 ~ 60418412 (+) True G422514
TU478871 lncRNA downstream 49410 60502052 ~ 60502319 (+) True G422612
TU478878 lncRNA downstream 57042 60509684 ~ 60513454 (+) False G422618
TU478879 lncRNA downstream 57042 60509684 ~ 60573995 (+) False G422618
TU478881 lncRNA downstream 57042 60509684 ~ 60513454 (+) True G422618
TU478918 lncRNA downstream 138829 60591471 ~ 60591691 (+) True G422654
XM_021603663.2 mRNA upstream 3440 60427110 ~ 60432323 (+) True LOC110524215
XM_021603653.2 mRNA upstream 24725 60407553 ~ 60411038 (+) False hsh2d
XM_021603654.2 mRNA upstream 24725 60407553 ~ 60411038 (+) False hsh2d
XM_021603655.2 mRNA upstream 24725 60407553 ~ 60411038 (+) False hsh2d
XM_021603656.2 mRNA upstream 24725 60407553 ~ 60411038 (+) True hsh2d
XM_021601327.2 mRNA downstream 27526 60480168 ~ 60484430 (+) True LOC110522875
XM_021603673.2 mRNA downstream 81891 60534533 ~ 60543487 (+) True ctns
XM_021603674.2 mRNA downstream 93539 60546181 ~ 60566583 (+) True LOC110524221
XM_021603679.2 mRNA downstream 237831 60690473 ~ 60692763 (+) False LOC110524224
XM_021603683.2 mRNA downstream 241578 60694220 ~ 60695904 (+) False LOC110524226
TU476694 other upstream 1491546 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 2018987 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 2536115 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 3068426 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 3477598 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 241615 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 1268895 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 1652881 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 1830510 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 2592448 63045090 ~ 63051530 (+) True G425224

Expression Profile