RNA id: XM_021603666.2



Basic Information


Item Value
RNA id XM_021603666.2
length 891
RNA type mRNA
GC content 0.47
exon number 5
gene id ccl44
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60459847 ~ 60462194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGCATGTCTGTGTttgagggagagcgagggagagagtgaaaaggagggagggagggagaaatataagagacagaaatagaggggAAGGTAACACAGCAGATTACTTCCCTGCCAGGCTCACCATGTTTCTGTTGCAGACTGTGACTGTTATTTCTCTGACTGTCATTCTCCTGGGCTCGGTGGAAGgtaACGGGGTACAGATGCAGAGAGATGTTCAGTGCTGTATGCAGTACTCCCAGGGGAAAGTGCGCACCAAAGACGTGCTGAGGTTTGAGGTACAGACGGAGGGGCCAGACTGCAGTATAAAAGCCATCATACTGTACACCAAGAAGGCGGTGAAGTGTGCTGACCCCAGAGACCGAAAGGTCAAGAGGTTACTGAGGAAGCTGCTCCAGAGGCAGAGGACCAAAGCACATAGGATCATGTGGCTCTACCCTCATGGCAACCTGCCAGTCATGTCGGAGGACAAGAAGGATGGGTGGGATGCCTTCCATGTGGAAtgagtgtgagGCCAAGTAAACTTCCAGCGGCTTGTCATCCTAACTCAGCCAAGCTTTCTGACTCTCCAGTCGTCTCGTGTCAATATCTCCCTGGGAGTGTGGTGGCTGAGCTGTCATTGCCATACAGTCCATGAGAGGTTTTGATATATAGCTAAATGTATTTTACACTGACTGTCGCTAACTATGCCAAAGTATTATGCTAAGTATTTCTGATTACTCTAGCCCAAGAAACCAGTCTTCACCGTCTATGTATACCTGTTCAATGTATACCTGTTCAATTTCCTAGAGGGCTTGTTCTCTCCTGAAACACAATGTAATGTAGAAAAATGCACTGTCTGTTTAAACACGACATCTGAAGTGGATCTTTTCTAAATAAATGGACCTGAAAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU479416 lncRNA downstream 16283 60443339 ~ 60443564 (-) True G423109
TU479417 lncRNA downstream 17429 60442213 ~ 60442418 (-) True G423110
TU479415 lncRNA downstream 17887 60441716 ~ 60441960 (-) True G423108
TU479414 lncRNA downstream 18292 60441299 ~ 60441555 (-) True G423107
TU479409 lncRNA downstream 23492 60435661 ~ 60436355 (-) True G423102
TU479460 lncRNA upstream 39866 60502059 ~ 60502263 (-) True G423151
TU479464 lncRNA upstream 42999 60505192 ~ 60507727 (-) True G423154
TU479466 lncRNA upstream 43469 60505662 ~ 60566413 (-) False G423155
TU479425 lncRNA upstream 47490 60509683 ~ 60512739 (-) False LOC110524219
TU479426 lncRNA upstream 47490 60509683 ~ 60512939 (-) False LOC110524219
XR_005051825.1 mRNA downstream 33313 60414163 ~ 60426534 (-) True LOC118964632
XM_021603660.2 mRNA downstream 60985 60395594 ~ 60398862 (-) False LOC110524214
XM_021603661.2 mRNA downstream 60986 60395024 ~ 60398861 (-) False LOC110524214
NM_001124604.1 mRNA downstream 153207 60298204 ~ 60306640 (-) True lpl
XM_021603652.2 mRNA downstream 170416 60282374 ~ 60289431 (-) True LOC110524209
XM_021603668.2 mRNA upstream 9119 60471312 ~ 60476448 (-) False LOC110524218
XM_021603669.2 mRNA upstream 9174 60471367 ~ 60476400 (-) True LOC110524218
XM_021603672.2 mRNA upstream 47486 60509679 ~ 60513235 (-) False LOC110524219
XM_021603670.2 mRNA upstream 47486 60509679 ~ 60513480 (-) False LOC110524219
XM_021603676.2 mRNA upstream 143015 60605208 ~ 60626475 (-) True LOC110524222
TU478587 other downstream 358791 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1321590 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 1423548 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2045704 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 2345787 58112387 ~ 58114060 (-) True G420193
TU479791 other upstream 596801 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 1154677 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 1187774 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 1196840 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 1426005 61888198 ~ 61927422 (-) False G424649

Expression Profile