RNA id: XM_021601327.2


Basic Information

Item Value
RNA id XM_021601327.2
length 1454
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110522875
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60480168 ~ 60484430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaggcatttgattgtggcctgtggaatgttctcccactcctcttcaatggctgtgcgaagttgttggatattgCTGGGAACTAGAATACGCTGTcctacacgtcgatccagagcattccaaacattcTCAATGAGTgacgtctggttggcgcccccccttgagttgtgctgtggcggagatctttgtgggctatactcagccttgtctgaggatgCACGACGACAACATTGTCCACCGAGACATGAAAGCAGAGAATGTCTTCTATACCACCAGCTACTGCATCAAGGTGGGAGACCTTGGCTTCAGCATAGTGACTGGTCCAACCGAGGTCCTCACCACATTCTGTGGTTCCACATCCTACGCCGCTCCAGAGCTCTTCAAAGAGAAAGGCTACATGGGTCGTTACATGGACATCTGGGCATTGGGCATCCTCCTCTACTTCATGGTCACCCAGGTCCTGTGCTTGGAGGAGCAGGAGGTGAAGTTGGCCTTTTCTGGCCTGGGCTTCATGGCGGCCCATCTGCAGAGCAACACCTAACACAGACAATTGCAACCCCCTGACGGGGACCTACCGTATCCTCCTCCACCACATCCAGAAGAGGAGGTCCGTGGAGGATGTGGGATATGCAGGCCTCTACCCTAAGGACTTTGTCACTACCAAGAGATGGACGCCACTGCTGTTATGGTCAAGCACAACCCAACTAATGTCTGTGTTATGCTATAGACCATGGTTTCGTAACAGTTTTTGTACCAGGGACTGGCAAGTTATGGATCTTCTCTTAGGATTAAAACAAACACTTTTGGAGGACCACTTACATTGAAATCAAACATTTGAGAACTGAAGTTCTCAGACAACTATCTGAGGGATCAGTTAGCAATATCTCAGAGACCAGTGGTGCTCCATGGacaagacacaaacacacccgTGCAGACATGTGcatactctcactcactcacacacacacaccgctctcTCAGGGATCTGCTGTTGCTTATTCATCGTAGTACAGAGGATAGGTAGATAAATACCACCATCTTGTGctcacattattcattacatttCAGTATGCCTCAGAAATCTGTGATGAAAAGAAACCGTGGTTAAGATTACAGGATCTGGTTTGTAATGTACAGTCCATTAATTCTATTGAGGCTTATGGACTAACAAGGCTTCAGCTTGTTGTGACCGTCACTTGTGACCGTCACTTTACTCAATAGGCCTATGTTCTGTTCAATAGGCTTACAGCAAGAGGCAGACTGAGTGCTATTAATCCTTTGCCTATCTTCCAAGCCTACTTAGTCCAGTGCTTCATCAAAATATAACCGGGGTTGTGCAAGGGCATGGCTAATCTTTCTTTGTTGTGATACAGGAAAAGTGCTTTGTCCAGATATGAATTGTAAGGGAGTCAGGCACCAAGTGTGGGCCCATGTCCTGATATTTTCATTGCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478821 lncRNA upstream 35566 60444312 ~ 60444602 (+) True G422570
TU478817 lncRNA upstream 46305 60433211 ~ 60433863 (+) True G422566
TU478814 lncRNA upstream 56329 60423550 ~ 60423839 (+) True G422563
TU478813 lncRNA upstream 57568 60422156 ~ 60422600 (+) True G422562
TU478812 lncRNA upstream 58524 60421431 ~ 60421644 (+) True G422561
TU478871 lncRNA downstream 17622 60502052 ~ 60502319 (+) True G422612
TU478878 lncRNA downstream 25254 60509684 ~ 60513454 (+) False G422618
TU478879 lncRNA downstream 25254 60509684 ~ 60573995 (+) False G422618
TU478881 lncRNA downstream 25254 60509684 ~ 60513454 (+) True G422618
TU478918 lncRNA downstream 107041 60591471 ~ 60591691 (+) True G422654
XM_036977999.1 mRNA upstream 27526 60435763 ~ 60452642 (+) True LOC110524216
XM_021603663.2 mRNA upstream 47845 60427110 ~ 60432323 (+) True LOC110524215
XM_021603653.2 mRNA upstream 69130 60407553 ~ 60411038 (+) False hsh2d
XM_021603673.2 mRNA downstream 50103 60534533 ~ 60543487 (+) True ctns
XM_021603674.2 mRNA downstream 61751 60546181 ~ 60566583 (+) True LOC110524221
XM_021603679.2 mRNA downstream 206043 60690473 ~ 60692763 (+) False LOC110524224
XM_021603683.2 mRNA downstream 209790 60694220 ~ 60695904 (+) False LOC110524226
XM_036978000.1 mRNA downstream 286326 60770756 ~ 60858538 (+) False LOC110524227
TU476694 other upstream 1535951 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 2063392 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 2580520 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 3112831 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 3522003 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 209827 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 1237107 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 1621093 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 1798722 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 2560660 63045090 ~ 63051530 (+) True G425224

Expression Profile