RNA id: TU479427


Basic Information

Item Value
RNA id TU479427
length 2151
lncRNA type sense_over
GC content 0.45
exon number 5
gene id LOC110524219
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60509679 ~ 60513480 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGGACTGAGCGAAGAAAAACTGTTCAGTGGCATTCAATTGTGAATCTTGTTCAAATTGTACCTCTTCCCAGCAATTGTAAAACATACCGTGGTTGTCATGCCAGAGGAGGTGTGGCTGATTGAGGTAACAGGGTTGGTAGAGAGGTGAAGGTATTATATAGCAGCTATAAAACAGCCAAGGGAACTCAACGAGGACATTTCTTCTGAGAGACTATCGGACCCCACAGCAGCAGTGACACCATGAGGTTCCAGGCTCTGTTCTTTCTCCTGCTCCTGACATGCATGTATCTCACTCTGGCTCAAGGGTCGTATGAGAACTGCTGCCTGAGGCATGTTACTGGCCTGAAGAAGAGTACCAAGAGGAATGTTGTAAGCTACAGGATACAGGAAACAGATGGAGGCTGCAACATCAAGGccgttgtGTTCATACTGAAGAAAGGGAAGACTGTTTGTGCCAATCCCAGCCACAAATGGGTACAGCATCTGAGGACTGTTGTCGATAAGACTCCAGGGAATGAGGGGATGTAGTTGATCAGTTGCTTCGTTGGAGGATCTTTCAACCAGTGTATGCCAATTTCCAAAAATAGGACAGTCATATCATCCTGTAACTAGAATGTGAACTTCATCATTATATTACTCATTATATTACAGTTTGGCTTAATGAGTTTATATTACATGCTTTTGGGAGGATACCTGAGATTCCATGGTTTAGATGGCTGTTAGCATGAGGTGACTAACCGTGCCTGCTTGTAATGTGCCACGGCAGCTTAGCATTATTGTGTGTGAGGGGcggaggggatggaggggggggttATTCACTATCCTCATGGGTACCGGAAATCCCccaaaagtcctcacaaggatagtcaATTAAGGAACATTTTCCCTCAtggggacatttcccacatccccatgaggacaaaggctattgtaagcttaggggttaggtgtaggttcagggttagggttagggttagggttcaggttagaggttagggaaaataagattttgaatggaaatcaatTTTTGGAGGGGGGTGGGGCAGAATGCATTGAAAAGCTACAATTCCTATTTTGTTAAACCTTgagacactacatgaccaaaagtatgtggacacctgctctagtcaaacatctcattccaaaatcatggcattaatatggagttggtctgccctttgctgctacaacagcctccactctcctgagaaggctttccactttaTGTTGGAAccttgctgcggggacttgctttcattcagccacaagaacaaaTGTGAGGTCGGCATTGAtgatgggcgattaggcctgccTCACAGTcgatgttccaattcatcccaaaggtgttcaatggggttgaggtcagggctctgtgtatgCCAGTcaagttaagatttcccttcactgggactaaggggcctagcccgaaccataacagccccagaccattattcctcctccaccaaactttacagttggcactatgcattgggacaggtagggttttcctggcatccgccaaaccaagattcatccgtcggactgccagatgatgaagcgtgattcatcactccagagagtgCGTTTCCAAAGCTccagtccaatggtggtgagctttacaccactccagctgcttagcattgcacatggtgatcttcggcttgtgtgccagaggcagtttggaactcagtagtgagtggtGTAACCGAGAACAGACAATTTTTAAGCGCTGAGTGCTTcgcattctgtgagcttgtgtggcctaccccTTTACTGCTGAGCCGTttttgctcctagatgtttccacttcacaataacagcacttaaagttgCCCGGGGTAGCTCAAGTAGGGCAGAAATTTcccgaactgacttgttggaaaggtagcattctatgatgccacgttgaaagtcactgagctcttcagtaaggccattctactgccaacgtttgtctttggagattgcatggctgtgtgctccattttatacacttgtcagcaacaggtgtggttgaaatagacGAATCCactttgaaagggtgtccacatactttgtatgtATAGTATATTTTTCTATCAGTACTATGTGTTAAAAGCAATATTTGTATAACTTCACATTTGTAATAAAGCAAAAAATGATAACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479464 lncRNA downstream 1956 60505192 ~ 60507727 (-) True G423154
TU479460 lncRNA downstream 7420 60502059 ~ 60502263 (-) True G423151
TU479416 lncRNA downstream 66119 60443339 ~ 60443564 (-) True G423109
TU479417 lncRNA downstream 67265 60442213 ~ 60442418 (-) True G423110
TU479415 lncRNA downstream 67723 60441716 ~ 60441960 (-) True G423108
TU479493 lncRNA upstream 42801 60556269 ~ 60575773 (-) True G423180
TU479465 lncRNA upstream 51401 60564869 ~ 60566413 (-) True G423155
TU479513 lncRNA upstream 79147 60592615 ~ 60592825 (-) True G423200
TU479515 lncRNA upstream 80435 60593903 ~ 60594197 (-) True G423202
TU479518 lncRNA upstream 82547 60596015 ~ 60596282 (-) True G423205
XM_021603668.2 mRNA downstream 33235 60471312 ~ 60476448 (-) False LOC110524218
XM_021603669.2 mRNA downstream 33283 60471367 ~ 60476400 (-) True LOC110524218
XM_021603667.2 mRNA downstream 47489 60459847 ~ 60462194 (-) True ccl44
XM_021603666.2 mRNA downstream 47490 60459847 ~ 60462193 (-) False ccl44
XM_021603665.2 mRNA downstream 47492 60459847 ~ 60462191 (-) False ccl44
XM_021603676.2 mRNA upstream 91740 60605208 ~ 60626475 (-) True LOC110524222
XM_021603678.2 mRNA upstream 165230 60678698 ~ 60682706 (-) False ndufa11
XM_021603677.2 mRNA upstream 165230 60678698 ~ 60682883 (-) True ndufa11
XM_021603680.2 mRNA upstream 182435 60695903 ~ 60728972 (-) False cers4a
XM_021603681.2 mRNA upstream 182435 60695903 ~ 60728972 (-) False cers4a
TU478587 other downstream 408627 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1371426 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 1473384 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2095540 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 2395623 58112387 ~ 58114060 (-) True G420193
TU479791 other upstream 545526 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 1103402 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 1136499 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 1145565 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 1374730 61888198 ~ 61927422 (-) False G424649

Expression Profile