RNA id: XM_021603673.2


Basic Information

Item Value
RNA id XM_021603673.2
length 4298
RNA type mRNA
GC content 0.42
exon number 11
gene id ctns
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60534533 ~ 60543487 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAACGCGTCATAGCAGTGCCAAGTCATATGACCTAGTGCAAGCTCACGGAAACAGAGGAAAACAAAGGACTGCTCAGCTGCGCTATCCCTCGAGATGGCAGATAAGAACTTTCGGTTATTCTTGTTCATAACACTCTGTACGGTCATTACATGTGATGGGAGTGTATCCCTATCTGCTCCAGCCACTGTAAATCTGGAGGAGAAAAGTTCAGCCAATATCACCATAACGCCTAGCTCTCCTCAGAATGTCTCAACACTCATTATTTTTAACTTCACCGACTCCTCTGCAAATGTTACCTCAATACTTAAACTGCCTCAACAGGTAGAGTTGCCTGCAAACGCCACATCAAGCACTTTTGAGGTTCATGCAGAACATGTGGGTCAGGTGACAGCCTATTTATACAGCAACAACACTGGCATTGCAAGCCATAAGACCCGAATCCGTTTCTTGGTTATTAGAAGCAACACTGTTGATATCATTAACCAAGTAATTGGTTGGATTTACTTCCTAGCATGGTCTATATCATTCTACCCTCAAGTATATGAGAACTGGAGAAGAAAAAGTGTGGTGGGGCTGAACTTTGATTTTCTGGCACTCAACTTGACAGGATTCATTGCCTACAGTGTCTTCAATGTAGGCCTCTTCTGGGTTCCGTACATGAAGGAAGAGTTTTTGAAGATAAATCCAAATGGTGTAAACCCAGTGGATGCCAACGATGTGTTCTTCAGTCTCCATGCAGTTGTGCTGACTCTTGTATATGTCTCTCAGTGTGCCATCTATGAAAGAGGAGGGCAGATGGTGTCCAAGATTGCTATTGGCCTTCTGGTGATTGGTTGGACGTTTGCCCTGGTCACCCTCTTTGTTGCTGTGGCCAGTAAGATCACCTGGCTGGAATATCTCTACTATTTCTCTTACATCAAGCTAGGTGTCACCCTCGTCAAATACATCCCACAGGTCTACATGAACTATCAAAGACAAAGCACAGAGGGTTGGAGCATTGGCAATGTGTTGCTGGACTTCACAGGAGGCAGCTTCAGTCTCATTCAGATGTTCCTTCAGTCATATAACAATGATGAATGGAAGCTCATCTTTGGGGACCCCACAAAGGCAGGACTTGGCTTGTTCTCCATATTCTTTGATGTGGTGTTCATCATTCAGCATTACTGTCTGTACAGACATAAAACACATTATGAGCTTGTGGTTGACCAGGAATAGGCTAATTGTAATTGACTGTTTACCTCTGCCAGTGAGTCCAAACGATTTACTGAAGGACTAATATAAGGGCTTTCTTCTATGTAGTGTTCCCAGTCATTGAATGGGAAGCTATTTAGACACAGGGGGGCCATACTTCCTCGTCTCAAAATGCGTCAGCCAATTAAAATATTTGGTGTAGTTGCACGTGATCAAACACTATTGgtactttcaagacaactgggaactctgggggttggggggaatgaggttgaatcatgacatcagtgatcaaTCTACAGGTCGAAAAGTcaaagctctagaaagaggctagagttcccgacttggaattccgagttggaagactgctcaaaatatattttcccagtcgtagatagcgcacccccccccccccccccagttggcAGTTGTATTGAATGCTCGGAAGTGTCCGATTTTCCAGGTTCcggttgttttgaacgcggcattaaTGTTCCCTTCAGATAACCTGTCAGATTTAGGCTGCtattccaaacacttaaaagacacaccctcagccctcaaattaagtggacacttctgatgacgtattATTACGTCTGATGAGTtgacacttgcagggcaagggaaGGACGAATTAATTTGAAATGGACTGCTCTTGCCAGGAAATGTGTCACTCGTTCATCCCACGGTTGTGTTTTCAGTCATCATGGAACTGTTGCGTGTGCCTTTTATATgctctacagtcaattatgattgcattTCATATCTTGGCTAGAAGACAACGCCTCCGCAGACATTGAAAGTTAGCCTTCCAACTATATCTGGAAATTACAATGTATAAGTGTGATGTCAGGGAAAGTTTATATGCGCAAGCAAACGTTTCCAAAAGccaaccaaacaaaaacatcatGACTTTTATGATGTGTTTGAGccgtcatgtgcattagtagcagaatgtataacttatttacatttgtTTCTACTTACACTTGAATGTTGACTTCTCCATATAATGTTGGTTTTAAGTTTTGGCTGACGTTTCTTAGTGGATGTACAATCATCGCAAATTGAATATGGGGCTTTTCAAGCCCtggagtgaacataattgtaaACTCGATCAAAAGCGAGGGCAGAAGGGCTTACGTTGCCAACTTCCCTTGCTTagctaatcatttggaccgacGACAAAGGAGGCTGCCGTGATTCCCCCAATTTagataaaggttacatttaaaaaatatatataatttaacgTGCATAAGTGGTGGAGGGTGTTTATTTTATGGGTTTGGAATGCAACCTTAGCAAAAGGCTAACTTGCATAGCTGGCCCGTGATCATATCTGGTTCAAATGCTGTATCGATCAATTCAAATCGTTGACGTAGTTGGACCTGATCGAACACGTTTTGATGAAAGTGTCCTTAACAAAAGTCCAATGACACGTTCTGATAATCAAAGCAACTAGATCACGTGTGTTTGACTGGACTGGTCAAACACACGTGCTAACTCCAGGTTGCAGATTGTGGCAAGGGTTTGAATCTCATGAGTTTATTTTCCCCTTTTTGAAATGCAGAATTACtttttgtgtcagtgtgttgaGAAGTGTAGCCAAAACCATGTGAATGAAGATTACGCATACATTTAATGAGGAGCTTCTTGTTGGAGTCCCTCTTGCAGACCGAAACAGGCTACTGGCACTGCTACATAAACAATCGTCACTTCTATAAACTATATTACATAGATGTTAGTGCTGTGCGATTTTAACCGGcatcggttcaattatttgaaattCTATTTATTTCCGTTTTATTTCTGTGAACTAGATGTAACGTTTCTATACAGATATATTAGATCATGCATTTCCAACAgtccaatattctacatagtttagtgcAGAAAACATGGTGATTAATTACAATGAGAATAATCCATTGCGTGCCAGTTTAAACTTGTCTGGTCTGTCCTGAGCAAGGCAAtggggtgcgttcgtaaattcatttTTGCTATCTAcactgatttcagagcactcttgtttgagtgtgccagagtgcagaataactgatatAATTTACGAATGTGCAACACCCGTTGAAATTGAAAGGTGTCAGTAAAGGTTGGGGGAAAAAAACGCAAATAAATTGTTgctagcagcacagttagtcactaaTGCTCTAGATAACGTGACAACAGCCTAactagctctgctagggcaagtaaaatggtgaGTGAGGTGTTGTCTCATTTGTGtgtggaagtagctagccaactttagccagttagctttggCACTtaactgccgttgtgaggtcagaacgctcagattgaccctactcctcggccagagggTCCAGTGTGCGGCCTGAACGCTCCGAGagtgaaacgctctgaatttacttgagtgataatgccagagaagccggtgttttGAAGATGTATTGGCACAGGTGTTTCGTCTTGGGCCTGCAAACCGTGCCATTATATCCTCCGAACTCCGggttcgagggcattatcacttttatacaacaggttaccaacatattcgagtaatgattgacatattttcattaatgtTATTTTGATAAATGTATTCATATTATTTCATCCTTCCGCAAGATATAGTccagacacaaatctagggttgctacccaagccggctggtcattTCTTCTATGAGACCCAGTCGTCCATAGATTCTGGGAAAAAAATAATTGAAcatgacccagtcgttcgttctaaatgtgcCATAACCATACTGGCTCGCAAAATTCGTATCCCTTGCCTGCTCTAGCTAGCCATAGTTGGCTAActcacagtcacgtcaaacagtgctgccagaataacaacagtagctgcatttgcttttgttaaagctgttttctagtgatgACATGTATTTggacatccataacaatgagctaatgaggtgtGATTTTGCAtagcatagaaaatgtgctctcccATCAGGACAGTTGTTCAGAGGTtcagagcttcaatgccatacaacactccttccgtggcctccaactgctcttaaacgctagtaaaaccaaatgcatgcttttcaaccgtttgctgccaGCACCCGCAcgccgactagcatc

Function

GO: NA

KEGG:

id description
K12386 CTNS; cystinosin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478878 lncRNA upstream 21079 60509684 ~ 60513454 (+) False G422618
TU478881 lncRNA upstream 21079 60509684 ~ 60513454 (+) True G422618
TU478871 lncRNA upstream 32214 60502052 ~ 60502319 (+) True G422612
TU478821 lncRNA upstream 89931 60444312 ~ 60444602 (+) True G422570
TU478817 lncRNA upstream 100670 60433211 ~ 60433863 (+) True G422566
TU478918 lncRNA downstream 47984 60591471 ~ 60591691 (+) True G422654
TU478922 lncRNA downstream 53128 60596615 ~ 60596844 (+) True G422658
TU478923 lncRNA downstream 53536 60597023 ~ 60597372 (+) True G422659
TU478938 lncRNA downstream 82003 60625490 ~ 60625880 (+) True G422674
TU478939 lncRNA downstream 82466 60625953 ~ 60626221 (+) True G422675
XM_021601327.2 mRNA upstream 50103 60480168 ~ 60484430 (+) True LOC110522875
XM_036977999.1 mRNA upstream 81891 60435763 ~ 60452642 (+) True LOC110524216
XM_021603663.2 mRNA upstream 102210 60427110 ~ 60432323 (+) True LOC110524215
XM_021603654.2 mRNA upstream 123495 60407553 ~ 60411038 (+) False hsh2d
XM_021603674.2 mRNA downstream 2694 60546181 ~ 60566583 (+) True LOC110524221
XM_021603679.2 mRNA downstream 146986 60690473 ~ 60692763 (+) False LOC110524224
XM_021603683.2 mRNA downstream 150733 60694220 ~ 60695904 (+) False LOC110524226
XM_036978000.1 mRNA downstream 227269 60770756 ~ 60858538 (+) False LOC110524227
XM_036978001.1 mRNA downstream 227270 60770757 ~ 60861371 (+) False LOC110524227
TU476694 other upstream 1590316 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 2117757 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 2634885 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 3167196 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 3576368 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 150770 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 1178050 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 1562036 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 1739665 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 2501603 63045090 ~ 63051530 (+) True G425224

Expression Profile