RNA id: XM_021603676.2


Basic Information

Item Value
RNA id XM_021603676.2
length 4981
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110524222
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60605208 ~ 60626475 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGCTCTGATAGGAGCAGGCTCGAGCCAAGCAGGAGAGTACTACTACATTACACTGTACATCAACAAAAGAGGATACTTTGAACTTTTCCAGAAGGAACATTGCTTCAGtgtctgcctgtttctctctctctcggtgatTGACATGTAGCAGCTGCCACACTTACAATCAGCGGGGCTCCCACTTAGTCGGGGCACTCAGTATCTCTGACACTCGGTATCTCTGAAGTTTCCATCACTGGAGCGCCGAGATTCAACGCTGgagttattctctctctctctgtctgtgagtgAGGACGGAGCTGGAATTAACTCTCAAGGACCCAAAGGAGGATACACCTTTCATGACGCACATTGATATAATATTTGTTTCAACCTTCATTGATGTTCCATATGAATGGAAAACTTTGGAGGGTTACTGGAAAACCTATACTAACATTACGAGGTCTGGAAGAGCGTATCATTAATCAATTATGATCCTCTTTTCCCTCACTTTTCTGCAGTGTTGAAGACATCTGTGGGGCGAACAGCTCAGTCAAGCTCTCCTGGAACATCTCGTATTGTTCAGAGATTGTTGTGCTATAATCTAAACATAGGGAAATGGACAGACTGAACTCATCTGGATCTTGGAGTTTTTTTAAAAGTACTCTCATGAGATTTGACCATATTTCAGTCCTGCGTAAATAGCATGATGTTTATTTAACAACGCACTGCAGGAGATTTCTAGAGAATTGATGTTGTTTTCCACGTTTGCTTTTCTTTGAAACACAGTGTTGGTGTATGGGAGCTGTGGACTGATTATTTATTACCATAAGAGGTGCTGGATTTCCAGGGCTGGTTCTCTCTCGGGGAGTCTGTCAGGTCTCCTTCAGCATTCTGACAGTCTGGCTGTGTGTGAAGGGGGGGGAAGAGTCATCTGGAGGGAACAACTCTACACCTCAGGCATTGTGTTTTTTATACCTTTACAAGACTGTATCTGACCTAACACCTTGGCTTTACTAAGGCACTCTGAGCACCTGGAGGTAAAACTATGGGGATTCTGGGCTTCTTCCTCCACCAGCGGAGCCTCGGGATGTGTGACGACGGTCTTCAGCAGATGCACAGACGCAGCAGCAGCCTGGTAGTCCTGAGGGAAAGCCCCGCTATTCTCTGACTCTGACCACCGAGTTGGACTGCTTGACCACTGGGCTGAAGGGAGAGCTGCTAcgactctctcctctactctgcctCGCCTGAGCGGAGGTCAAGCGAAGAGTTAGACACGCAGACGAGTCTGGATAAGCCGGGCGAACGAGTGTCAATGCTCCTACTTATTCTACGATGAAGTTATGGAAGTGCGCCGCCATCGCCTTGACTCTCTGTGGAGCAGCACTGTCCCTCTTCCTCACTCGAATCATGGTTCCCACGCCACCGCATCACATCCCCTCCTGGTACACGTCTTCGTCGCGGACGTCCTTGTCCTCCAACTCCTCCCTGATCGGCGGCCGTCATCGCAAAGCGCGGTCGGTGGAAGGCGTTGGCAACATTTTGACAGAATTCATGCACATGTTCCAGAGCTTCACAGAGGGGGAGCTGAAGCAGATGATCGGGACTCTGGTGGAGAAGAAGGCACGGCAGGAGGCCAGGCAGGAGGCCAGGCAGAGCAAAAGGACTAAACGGGCTAAGAAAGCATCAAAGCCATGTTCCCTGCGGGAGGTGGAAGTGACTGTCAGTGAGCTGGGTCTGGGCTACCACAGTGATGAAACGCTGCTCTTCAGGTACTGCAGCGGGAACTGTAAAGCTAGCCGACGCAACTACGACGTCATACTGAAGAAATGGACGAGGAAAGGCATCTCAAAGAGGGAGAAGAGCCCGTGCTGCCGGCCCAAGGAGTACGATGACATTTCCTTCCTGGACAACAATAACAGATACAAGACGCTCCATAACTTTTCTGCTCTGGCCTGTGGCTGTGTATAACGCCTCTATAGCCATTTTGATTTCCCAGATACTGTGTCGAACATGGGAAAcgcaacaactactgctacaaaaTCAAAAACAGGAGTACACAAGAATCGATCCCTACAGTACAATGCCAGGGAATACGGACATTTAAACTACTACTATTTAAGACTGTTaattttgtgtttgtttttaaaAGACATCAGCAAACGTCTGTTTTGCTTTCCTTGCCTTTCATGGGATACTTCTCTGTCGGTTGTGAGGGTAATATATTATATGACCTATGTGTCATCATGTGGCAATAACAGTTACTGCAATGATTTGCTGCTTGATTGTGGACTATGGAGCAATGGCTCCATTACCTACATGTGTACAAAACACCAGCTGAGGTATAACTAGTGCATGCAGTATTGCCAGTCTGGTCTGATACCACACTTGTAAAACATTTTCAGAAACGAGTTTGTAGGAGTGTGTTCATGGAAAATAATAGAATAAGCTAGCGAATGCAATATGAAGCTTCCACAGTAGGCTTCCCCACAACGTCTTGATCTGCACCATTAATAAGGCATGAGATATCACTAAGGCAAGTCCAATGGAGCAGCAACAACAGTACAGGAGACTAGGAAAGACGAGAGGGCCTGGAGAAACATGGCTTCGCACAATATATAGTGTGTCATTCCTTCATATCACCACCGGTAATGACCTAAATAATGAAATCTCCAGCCTTTATCAGTAACCATGAAAATCTACCTCATTTATGTCGAACAATAATGGAAAACAACACCCAGTATAAAATAACCGTTAAATGTTCTCCTACTGCTTCCTCTGTATTCATCGCTAGAAACAGACTGAAATAAGATATTTTAGTAGTAAATACACTAATGACTTGTATTGGCATAAGAGGTTGCAGGGTAGAAAAACAACCACAGCCATATGCGTGTTGCATGCATTCTAAATGGAGCCTGTATGGGTGATTTAATCTTAATGACAGCAGCTTGTAAATCAAATGGAATGGCTATGGCTGTATAAGCCCTTTCCCGGAAAACAGAAATCCAACAGAAAAACAACATGCTATCAGAAATCCCTATCCTTCTGCAGCAAGATCACTATAAACTCATCAAATACAACCTAGATGGTAGAGTAATGCAGTCTTGTTTGATCATCTAGGCAGAGTGGTGCATTTACTGGGTGACTACTGCATCGTAAACGTGACTGCGAGAGGGATTGTGCTTCAGTCTTACCCTGAATTAGCCTCCACAAATCCATACCATTTGTCCAAATCCCATAATAGACTACCCTAATCCACTTACCTCCTTTTTAACTGACTTGGCCAAAAGCACTGAGCACAAAATAGAGAAATGCAAGCCACTCTGCAGCGCTAACAGCTATTTTTAGTCACTACATGATTAGAGAACACTGGAGACCTTTTGAATTAACCACACATTTGATGTTACCAGGTTTGATAGCCATACATGTTTCGTTCAACagtcattttgaaaacaaaatagaAATCTCTCTCTTAGATGAATTGTGGCCAAATATACTTAGAATAAATAACCTTATCGTAAAACACATTGAACAGGTTCAAGAGcaagacaaaaaaaactaaaatgacGAGTTCAGAAACAATCTTTCATACTCGAAAACTGTAAACAAATCATTTTAGACTGAGAGCTGCATCGAAATGGTAACTTCATCCCAATGAGCTATTTCACCTGAGCATCTATAGTATAGTGAGAGGTACAGTAAGGTTTAAGTCTGAAACCAGTGGAGATACCTCTTAAGTTAAAACCAATCATATAGTTAGAGCAGAAAGTTAATTAAAGGCCCATGCTGGCGTTAAGCTAAGAAAACAGGCCTCTCCAGCCCAGGACCATAATAGCCTCAAGTCTAAATGTGCTTAAAAACCAAAGTATTCCTCCCTTTCTGAATAATCAGTACACAGACACTTGCTGTCCAGATTAGCTGTAGACTGCTCCTTGCATGTAGAGAAATTAGTATATCTCTGGCATGTTACAATGGTCCACATTGTTGAGGACGTCTCAATCAAATAATTAAAGGGATAgatcacccaaattacaaaaggACACGCTGGTTTCCTTAAACCTGTAAGCAGTGTGTTGACAAGGTACATATGACAgcacagcaatccatgctttgttTCCTAATGTTTCCTAATGCAAATGGCACAAATTCCATTCAAGTCATGTGACAAATATTAACATTTTCCAGGTATCATGTTAAAATCATCTAAGTGgctttgttgagcttcacaatcaaTTTCAGATACTTTCGAATTATTTGGACATAATGCGCAAAAACGGCTTACatcggtcccatgacttgaatgggatttgtggcacaaatgctaaaacgttagcatttggaaacagggccagggaaactaaaccaaagcatggattgctgtcataccttgtccatagactgcttacaggttaaggaaaccaatgtttaattttgtaatttgggtgaactatccctttaagtctTTTTTGAAGGACAAAAATTGTAATTTATTTTTGCCTTTTCAAATGGACAATTTAAGAGAAAAGAGCAGCTAGAAAAACAAATTGCTGTCTTAATGTTGATGATATATACTATATGTATTTGTCGTTATATATTTTCATAACCCTTATATTTGCCATCACGAATTACTAAGTCTATTCAGCactataatacagtatatctatGGGTTGAAATTCCCTCAGGTTTCCTTAGTTTCCTCTCGTTACCTCCCTTGAACTCCCTCTCAAAATGGGAGGGAAACATTTGGGAAATGACAAACACCCTTCAGCTCTGGCATTGTTGGACTACGTTGACCAACTGCAGTAAAGTTGATGCAATGCATCTGTATTATAGATCATGTATATTTATTGGAGTGTAAGTTATGGTTTATTTATTTAGATAGCATCATCGAAAAAGAGAAATATGTTTATTTATTGAACTATTGGTGCCAAAGTGGACTTTACATGTATGATATTCTACATATTATGACCGTTGAATAAACTTAAATCGGGTTCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479518 lncRNA downstream 8926 60596015 ~ 60596282 (-) True G423205
TU479515 lncRNA downstream 11011 60593903 ~ 60594197 (-) True G423202
TU479513 lncRNA downstream 12383 60592615 ~ 60592825 (-) True G423200
TU479493 lncRNA downstream 29435 60556269 ~ 60575773 (-) True G423180
TU479466 lncRNA downstream 38795 60505662 ~ 60566413 (-) False G423155
TU479546 lncRNA upstream 914 60627389 ~ 60627595 (-) True G423230
TU479563 lncRNA upstream 24897 60651372 ~ 60652062 (-) True G423246
TU479573 lncRNA upstream 69526 60696001 ~ 60698223 (-) True cers4a
TU479569 lncRNA upstream 73574 60700049 ~ 60704571 (-) True G423251
TU479615 lncRNA upstream 117797 60744272 ~ 60744501 (-) True G423291
XM_021603670.2 mRNA downstream 91728 60509679 ~ 60513480 (-) False LOC110524219
XM_021603672.2 mRNA downstream 91973 60509679 ~ 60513235 (-) False LOC110524219
XM_021603668.2 mRNA downstream 128760 60471312 ~ 60476448 (-) False LOC110524218
XM_021603669.2 mRNA downstream 128808 60471367 ~ 60476400 (-) True LOC110524218
XM_021603667.2 mRNA downstream 143014 60459847 ~ 60462194 (-) True ccl44
XM_021603678.2 mRNA upstream 52223 60678698 ~ 60682706 (-) False ndufa11
XM_021603677.2 mRNA upstream 52223 60678698 ~ 60682883 (-) True ndufa11
XM_021603680.2 mRNA upstream 69428 60695903 ~ 60728972 (-) False cers4a
XM_021603681.2 mRNA upstream 69428 60695903 ~ 60728972 (-) False cers4a
XM_021603682.2 mRNA upstream 69428 60695903 ~ 60728972 (-) False cers4a
TU478587 other downstream 504152 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 1466951 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 1568909 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2191065 58413128 ~ 58414143 (-) True G420421
TU476193 other downstream 2491148 58112387 ~ 58114060 (-) True G420193
TU479791 other upstream 432519 61058994 ~ 61071143 (-) True LOC110524239
TU480894 other upstream 990395 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 1023492 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 1032558 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 1261723 61888198 ~ 61927422 (-) False G424649

Expression Profile