RNA id: XM_021603679.2


Basic Information

Item Value
RNA id XM_021603679.2
length 2137
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC110524224
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60666192 ~ 60692763 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGATTCTTTCCGGGGCGAAGTTTAAGCCACAGGTTACAAAACTGTTGCGAAATTCATTGCATTTATCCAGCCTTTTATATCAAAACAGTGCAGACAACGAACTATTAGATTGCACGAGTCATGTTGTTCGTAATTATTACATGGAATTATATCTATTGTTACGTTTCTCATGAGTTTCAGATATTAGATATATCATAGGATGGCGTATCGGTACTGTAACTGGTTAACTAGTTAGCTTGCTGTTTCGGTTTCTAGCATAGCATCATCAAGCAGTTTTTTCTGGACACGGAACAATGTTTTTTGGTGCAATTGTAGAGTTGTTTACCGAACTAGGAGGACCTATACTAAACGCTGAAGAAAGTGCAGCCATGGCAGGAAGAGTaaacaccagccctccggtgaaATGCTTGTTCACGAGCAATGAGTCAATAGTCACGATCAGTCTTCTACGGTGAGCTAGTGTACATTTACTTTTAGGTCGTGTCATATTCCTCATGTGACATGTCCTCGCCGTCACCGGTACAAATTCGAGAGGCGAACGCACACTTGGCCGCGGTGCACAGGCGGGTAGCAGAACTGGAGCAGCGGCTCGAGGCAGCAGAGAACACCGTGAGGGAGCAAGCAGAGAGTCTCATCAGGAAGGACGAGCAACTGAGGGCTGCTACCCAGGAGATCACCGAGGCCAAGAATAAAGAGATTTACTACCTCCACGAGAAGCTGTGCAAGTCAGAGGACACCATCCAGAGGTTTCAGAACATGATCAAGGAGAAGAATGCTATGATAGGCCAGTTGCAACATCGCTGCCAGCTCCTGGACAACATCTGTAAGAGCAGGCCTTTACTAGACAGTATGCTGTTCCATATGGCTGAGGCAGAAAGACTTGGGCCAGTGGTGGGGATGGGTGAACCCACTGTCAAAACATCCCTCACAGACGGGGAGTCAAACTGCAGTCCCAACCGCATCTCTAACCACAAAGACTTCTCTCTCAGTGAGGATGACCAGGAGCTGGATGAGATAGTGTTTGGAACAACTGTATAGTACAAGGCCCCTGAGAAGAGTTAGGTTAGTGAAGAGGTTCTAGAAGAGGGTGGTACTTGAAGTAGAGGCATGAGTCATTTCAAAACATCTGCATGTTGTtattgaattttaaaaaatctcaaatagaacaTTTGTGCTCTAAGTAGTTCTTTATACTCTGCAGATAACTTACAAGTTAACATGATGTCACATGGGGGAACTGCTTGACACGTTATGAAGACTTTGGTTTAACCAAATAAAGGGAAACTAATCTGCCTTGATTCCACATCTTAACCAGACAATAACCAGGTGTCCATTTGACATCAGTTTCTGTTGTTTTAACTGCTGTATTTTTGTACTGTAATATTTGGAAATGGTGTAAAAATTACCTCTGTTTATGTTCAGCTCAAAGTGTTCAAAGGTCAAAAAGTGTTGAGAAGGTCAGAGTTCAGAAAATACATCTGTTGCACATGCAAGGCTAGGTTCTACTGCATCCCATGCATTTGACTATATAGTATACAGTTTACATTGAATCAGTCATTCTGCACTGACAAAGTTTTTTTTGAAGTGACAATTAAACTTAAAGTGCTTGAGGTTATTTTCGGGGAGTGTACTTACTCTACATGTAACCCATGTAAGCATGGCATTTAATGGTTAATCTAAGACATACATTCGCCTCTTGTTGGCGTCAATATTTGCTTCAGAGAAGCAAAGTCTATGCAACATTGAAGTTTGCGTCACTCTTACAGTACACTCACTCTTGCATTACATAAGATGCTACATAGATGTGACATTCCAGTAGGGTCAAAAGCAGGGGAAATCATGCCTTGTGCTCATAATAATACTGTACtgttttgcttagtcattatatAAGCAATATTATATATTGTTTTGGCTTAAATCATCAGGTGGCTAAAAGTATTGTGTTATGtctgctgtgtctttcagtaCAACTGCATGATTGTGCAGCTTAAACTGTTCCTCTTGAAATGTCAATGTGTGTTGCTCTGTtcatttaagaaaatattttttgAGAAGTGGTATTTTGATTCAATGAGGAAGTTTTTTTTTAGCAACAGACCAGTCTGCtacataaataaatgatttatttCTACAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478983 lncRNA upstream 7728 60678666 ~ 60682745 (+) True G422717
TU478970 lncRNA upstream 27785 60662361 ~ 60662688 (+) True G422705
TU478943 lncRNA upstream 60032 60630236 ~ 60630441 (+) True G422679
TU478939 lncRNA upstream 64252 60625953 ~ 60626221 (+) True G422675
TU478938 lncRNA upstream 64593 60625490 ~ 60625880 (+) True G422674
TU478987 lncRNA downstream 1095 60693858 ~ 60694107 (+) True G422720
TU478966 lncRNA downstream 7280 60700043 ~ 60704580 (+) True G422701
TU479033 lncRNA downstream 166036 60858799 ~ 60861358 (+) False LOC110524227
TU479034 lncRNA downstream 166036 60858799 ~ 60861358 (+) True LOC110524227
TU479080 lncRNA downstream 194821 60887584 ~ 60889990 (+) True G422811
XM_021603674.2 mRNA upstream 123890 60546181 ~ 60566583 (+) True LOC110524221
XM_021603673.2 mRNA upstream 146986 60534533 ~ 60543487 (+) True ctns
XM_021601327.2 mRNA upstream 206043 60480168 ~ 60484430 (+) True LOC110522875
XM_036977999.1 mRNA upstream 237831 60435763 ~ 60452642 (+) True LOC110524216
XM_021603663.2 mRNA upstream 258150 60427110 ~ 60432323 (+) True LOC110524215
XM_021603683.2 mRNA downstream 1457 60694220 ~ 60695904 (+) False LOC110524226
XM_036978000.1 mRNA downstream 77993 60770756 ~ 60858538 (+) False LOC110524227
XM_036978001.1 mRNA downstream 77994 60770757 ~ 60861371 (+) False LOC110524227
XM_036978002.1 mRNA downstream 77994 60770757 ~ 60861371 (+) False LOC110524227
XM_021603693.2 mRNA downstream 246567 60939330 ~ 60942382 (+) True LOC110524234
TU476694 other upstream 1746256 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 2273697 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 2790825 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 3323136 57365364 ~ 57367337 (+) True LOC110524119
TU474030 other upstream 3732308 56943838 ~ 56958165 (+) True LOC100135807
TU478964 other downstream 1494 60694257 ~ 60695905 (+) True LOC110524226
TU480287 other downstream 1028774 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 1412760 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 1590389 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 2352327 63045090 ~ 63051530 (+) True G425224

Expression Profile