RNA id: TU479034


Basic Information

Item Value
RNA id TU479034
length 2423
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC110524227
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 60770756 ~ 60861371 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGAAAGGTATGCCGTGTTTGGACCACAAACCCCTGCCATTTTAGATTTTACACACAAAATGGCTGACGAGAATCCATGAAGCACTGGGATAAGTGGAAATGGAAGGAGATGCACAAAAAGCAGAACATGTTTGAAATGGTAAAGAAAGTGTTATAAAGTATAAGGGAGAAGTATTTTACTGTTGAGTTCGTGTAGGACAATCTTCTTATGGTGAAGTGGAAATGTAAGAACCACTGATTTGCTAGGAGACAAATAGAGGTGTGTGTTGGTGAATGGTGGTCCAAGCAGTCCCTCGCCTGTCTGTAATCTCTGTGAAATCACAACACTGGGGTTAGAGGTCATGCTTCACCCTACTCAGTATTCTAGTGTGTCAGTTAATGTATTGTAGTGTTAAAAAAATGTTCACAAGAAGGACTGCAACATTTACGCAACATGTCAGGTTTCACACTAATGTAATGGAGAGTTGGTCATCATGCATAGTATCAATTCTAGGAGTAAAACACCAGCTTTTTACTGTTTATAATCATGCTTTCATGTAAAGCAGTGGTAAGCAGGGACTCTCTGGTGTGATGCCGTGTGCTACCGGCCTGTGTTCTGTTACCTCAATTCTTCTCACTCATCTCCTCCACTCACCATACATTAGCGCTGTTGTAATGCCTCCGCTGGCCAGGAGAGGGCCACACTGTCCCTCAGCATGAGCCATGTccagagacagaggtagaagtCGCCCCTAATCACTGTTCCAGGTTCAGATCTTGTTTTATCTCCTAAATGGTTGAGGTTAAGATTGAGGTAGGATAATCTGAACCTAGCTCTGTGGTTAGGGGCAACGTCTACCTCGAGCCTTAGGTCCTCTCTCCAATAGGCTGCCAGGACATTGTACTGCAGTTTTATTATCATGCACTGAAACTGCTCATTGAATTTAATCAGGGAGATTTGCTTCAAAATGCAGCAAACAGGTCCTGAGGGATTCAGCTTTTCTGAGAGTTGACATTCTGACTGGCAGTGAGAACTCTTGGACGGCGGAACCATCTGCTGCCCATAGAGAAACATAGCTGGGGATAAAAGATACTGTAACGACCTCAATGGTACATGACAACGCTACTGCAAACAGACAGTTAACGTTTGGGATTTTTACAGAACACATAaatgcacacacatatacaacacacacacaggtgaactCTGAACCTTACTGAAAACAAGCATCCATCAGGGCAtactttgtttttttttctctcaacgAGAAAAAGGTGCTAAATACTTCCCTCTTACGTTGTACAAAAAAAAGATTGCGGTCTTGAATCTTGATTGCGgaaaaaaaaagtgacatttttactaggttttttttgttgttttgtgtttgtctgtctttCGTAATGTCTTAATGCTGAGAACCAATATTATCGAACTTGCTTCTTGAAAATGTAATTGTATATTTTTAAGTGAAATgtagttgtttttgttgttgtttttaaaaaaaagcgTCAAGGCTGCCCAAACCAAATACTTATTGTAAACCCAAGGTTGAAGTCCTTAAAGTGCTGGTGACTTTGTTCTGCTCAGAAAAAAAAGATAAAATCAAATCCTAAAGTGGCATCCATTTTGTGATCATGCAGTAGATTAGAACATGGCCTTAATGAAGTACCACTGTTTACCTATCATTGTCCTACTCAGCTCATACTGTAGTCTCTGAGCTCATAATGCCGTCGGTTAGTGGGTGCAGAGTTCCAGCAGCCTGGTACTCGATAAGTTTGTGCAACGGACCATAGGTGTTGGCAagacggcacaaacagatcttgGACCAGGCTAAATTGAGTGTCAGTGACCAAAACACACAGCTACGGTAACATTCTCACTCTACAGTATGTCTCAGTATTGTGAAGTTGACACTGTAACAAGCTTATAGGATCAACGCAAACTCAACGTGGCCATCTATCTCACACTGGCAGTGAGTGTCTCTGTTTAGTAACCTATCTCTGGTGCTCAACTATGATTTTGCTCTCTGAACATGCAAGGTTACTGCACTGTTCCCACAGCCTGGGCTATATTTATGCATAAAACATTTAACATGGGAACTTTGTATCTGGTTTGTTATTTTATTTGCCACTATGTTAAGGAAAGAATGTGCGTGTGCATACTGTATCTCAGCTTCAGCGGCAACCTTGAACTTCGCTGTTATCAACGCCCCATCggtcaatgctgatttgaatttAAGGGAGTAAAGAACTCAAAACTGAACATCCCTCACAAACTAGTCTTTTCCAATTTTCAAAACTCTTATTTTATGCTGGGACAAAATCCATCCACCCAAGGTTTATCATCTATTGGGTACACATTTGCAATCTATCAAATTTGGATGATTCTCATTATTTTGTAAACTTTTGTCAGTGACATAAATGGCAATAAAAGTATTGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478966 lncRNA upstream 154219 60700043 ~ 60704580 (+) True G422701
TU478987 lncRNA upstream 164692 60693858 ~ 60694107 (+) True G422720
TU478974 lncRNA upstream 166069 60666192 ~ 60692730 (+) True LOC110524224
TU478983 lncRNA upstream 176054 60678666 ~ 60682745 (+) True G422717
TU478970 lncRNA upstream 196111 60662361 ~ 60662688 (+) True G422705
TU479080 lncRNA downstream 26226 60887584 ~ 60889990 (+) True G422811
TU479083 lncRNA downstream 28820 60890178 ~ 60890448 (+) True G422814
TU479110 lncRNA downstream 62905 60924263 ~ 60926985 (+) True G422838
TU479113 lncRNA downstream 69614 60930972 ~ 60931277 (+) True G422841
TU479115 lncRNA downstream 76933 60938291 ~ 60938505 (+) True G422843
XM_036978000.1 mRNA upstream 261 60770756 ~ 60858538 (+) False LOC110524227
XM_021603683.2 mRNA upstream 162895 60694220 ~ 60695904 (+) False LOC110524226
XM_021603679.2 mRNA upstream 166036 60690473 ~ 60692763 (+) False LOC110524224
XM_021603674.2 mRNA upstream 292216 60546181 ~ 60566583 (+) True LOC110524221
XM_021603673.2 mRNA upstream 315312 60534533 ~ 60543487 (+) True ctns
XM_021603693.2 mRNA downstream 77972 60939330 ~ 60942382 (+) True LOC110524234
XM_036978012.1 mRNA downstream 216146 61077504 ~ 61081007 (+) True LOC118964633
XM_021603715.2 mRNA downstream 387214 61248572 ~ 61265206 (+) True tm6sf2
XM_036978014.1 mRNA downstream 405857 61267215 ~ 61285666 (+) True hapln4
XM_021603719.2 mRNA downstream 729245 61590603 ~ 61599332 (+) True nr2c2ap
TU478964 other upstream 162894 60694257 ~ 60695905 (+) True LOC110524226
TU476694 other upstream 1914582 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 2442023 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 2959151 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 3491462 57365364 ~ 57367337 (+) True LOC110524119
TU480287 other downstream 860179 61721537 ~ 61722024 (+) True G423922
TU480458 other downstream 1244165 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 1421794 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 2183732 63045090 ~ 63051530 (+) True G425224
TU482675 other downstream 2815056 63676414 ~ 63684239 (+) True nfil3-4

Expression Profile